Strain Fitness in Pantoea sp. MT58 around IAI47_19310

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
86,215	+				-0.2
86,215	+				+0.4
86,216	-				-1.4
86,219	+				-1.2
86,219	+				+0.9
86,220	-				-1.2
86,220	-				+0.2
86,220	-				-1.0
86,220	-				+0.2
86,229	+				+0.2
86,230	-				+0.2
86,236	-				+0.2
86,247	-				-2.0
86,285	-				+0.5
86,388	+		IAI47_19305	0.25	-0.1
86,389	-		IAI47_19305	0.25	+0.2
86,422	+		IAI47_19305	0.30	-0.5
86,423	-		IAI47_19305	0.30	+0.2
86,458	+		IAI47_19305	0.35	-0.3
86,458	+		IAI47_19305	0.35	-2.4
86,459	-		IAI47_19305	0.36	+0.8
86,459	-		IAI47_19305	0.36	+0.0
86,493	+		IAI47_19305	0.41	-0.1
86,493	+		IAI47_19305	0.41	+0.8
86,511	+		IAI47_19305	0.43	-2.2
86,511	+		IAI47_19305	0.43	+0.6
86,512	-		IAI47_19305	0.43	+0.7
86,512	-		IAI47_19305	0.43	+0.5
86,547	+		IAI47_19305	0.49	-2.0
86,560	+		IAI47_19305	0.50	+0.3
86,560	+		IAI47_19305	0.50	-0.4
86,560	+		IAI47_19305	0.50	-0.6
86,560	+		IAI47_19305	0.50	-1.2
86,560	+		IAI47_19305	0.50	-0.1
86,615	+		IAI47_19305	0.59	+0.2
86,643	+		IAI47_19305	0.63	-0.6
86,643	+		IAI47_19305	0.63	-2.3
86,643	+		IAI47_19305	0.63	+0.4
86,683	+		IAI47_19305	0.69	-0.2
86,685	+		IAI47_19305	0.69	+0.5
86,685	+		IAI47_19305	0.69	-0.6
86,686	-		IAI47_19305	0.69	+0.2
86,686	-		IAI47_19305	0.69	+0.9
86,699	+		IAI47_19305	0.71	+1.0
86,699	+		IAI47_19305	0.71	+0.8
86,699	+		IAI47_19305	0.71	+0.3
86,699	+		IAI47_19305	0.71	-1.3
86,699	+		IAI47_19305	0.71	-0.7
86,699	+		IAI47_19305	0.71	-0.2
86,699	+		IAI47_19305	0.71	+0.6
86,700	-		IAI47_19305	0.71	-0.6
86,700	-		IAI47_19305	0.71	+0.2
86,700	-		IAI47_19305	0.71	+2.8
86,700	-		IAI47_19305	0.71	+1.8
86,700	-		IAI47_19305	0.71	-0.3
86,700	-		IAI47_19305	0.71	+0.2
86,700	-		IAI47_19305	0.71	+0.4
86,700	-		IAI47_19305	0.71	+0.2
86,700	-		IAI47_19305	0.71	+0.8
86,700	-		IAI47_19305	0.71	+1.2
86,725	+		IAI47_19305	0.75	-0.8
86,776	-		IAI47_19305	0.82	+0.8
86,881	+				-0.6
86,882	-				+1.8
86,895	+				-0.7
86,949	+				+1.2
86,949	+				+2.0
86,950	-				-0.7
86,950	-				+1.5
86,950	-				-0.1
86,950	-				+1.2
86,950	-				-3.3
86,950	-				+0.2
86,980	-				+1.2
87,005	-				-0.8
87,005	-				+0.2
87,005	-				-0.7
87,014	+				-0.8
87,015	-				+0.8
87,015	-				-0.0
87,019	+				-0.4
87,047	+				+1.3
87,047	+				+0.8
87,048	-				+0.2
87,048	-				+0.2
87,079	-				+0.2
87,081	+				+0.2
87,081	+				-0.6
87,081	+				-1.4
87,081	+				+2.3
87,081	+				-0.8
87,081	+				+1.2
87,081	+				+1.2
87,081	+				-0.7
87,081	+				-0.5
87,081	+				+1.0
87,082	-				-0.6
87,082	-				-0.1
87,082	-				-0.2
87,082	-				-1.0
87,082	-				-0.1
87,082	-				+0.3
87,082	-				+1.2
87,082	-				+0.8
87,082	-				+0.8
87,082	-				+0.2
87,112	+				-0.6
87,112	+				+0.9
87,112	+				-0.8
87,113	-				-0.2
87,113	-				+0.3
87,172	+				+0.2
87,173	-				+0.8
87,173	-				+1.5
87,179	+				-0.7
87,179	+				+0.2
87,180	-				+0.2
87,180	-				+0.5
87,180	-				+0.6
87,180	-				-0.4
87,180	-				-0.3
87,180	-				+0.8
87,217	-				-0.8
87,224	-				+0.8
87,224	-				+1.2
87,227	+				-0.0
87,227	+				-0.8
87,227	+				-0.2
87,227	+				+1.8
87,227	+				-1.1
87,227	+				-0.0
87,227	+				+1.0
87,228	-				+0.5
87,228	-				-0.2
87,228	-				+0.2
87,228	-				+0.2
87,264	+				+2.0
87,319	+		IAI47_19310	0.18	-0.2
87,319	+		IAI47_19310	0.18	+1.3
87,319	+		IAI47_19310	0.18	-0.6
87,319	+		IAI47_19310	0.18	+0.3
87,319	+		IAI47_19310	0.18	+0.6
87,320	-		IAI47_19310	0.19	-1.8
87,320	-		IAI47_19310	0.19	+0.4
87,320	-		IAI47_19310	0.19	-1.4
87,320	-		IAI47_19310	0.19	+0.5
87,320	-		IAI47_19310	0.19	+0.2
87,321	+		IAI47_19310	0.19	-0.6
87,340	+		IAI47_19310	0.22	-1.4
87,340	+		IAI47_19310	0.22	+0.3
87,340	+		IAI47_19310	0.22	-1.1
87,340	+		IAI47_19310	0.22	-0.2
87,340	+		IAI47_19310	0.22	+0.1
87,340	+		IAI47_19310	0.22	+0.4
87,340	+		IAI47_19310	0.22	-0.2
87,340	+		IAI47_19310	0.22	+0.4
87,340	+		IAI47_19310	0.22	-2.2
87,341	-		IAI47_19310	0.22	+0.1
87,341	-		IAI47_19310	0.22	+1.2
87,341	-		IAI47_19310	0.22	+0.5
87,388	+		IAI47_19310	0.30	-0.1
87,436	+		IAI47_19310	0.39	+0.0
87,437	-		IAI47_19310	0.39	-0.8
87,437	-		IAI47_19310	0.39	+0.2
87,438	+		IAI47_19310	0.39	+2.2
87,438	+		IAI47_19310	0.39	+0.6
87,438	+		IAI47_19310	0.39	-0.3
87,439	-		IAI47_19310	0.39	+0.2
87,516	+		IAI47_19310	0.53	+1.2
87,516	+		IAI47_19310	0.53	+0.3
87,517	-		IAI47_19310	0.53	-0.3
87,534	+		IAI47_19310	0.56	-0.8
87,534	+		IAI47_19310	0.56	-3.0
87,534	+		IAI47_19310	0.56	-0.3
87,534	+		IAI47_19310	0.56	+0.2
87,534	+		IAI47_19310	0.56	-0.8
87,534	+		IAI47_19310	0.56	+0.8
87,534	+		IAI47_19310	0.56	-1.4
87,534	+		IAI47_19310	0.56	+1.5
87,534	+		IAI47_19310	0.56	+0.5
87,535	-		IAI47_19310	0.56	+0.2
87,535	-		IAI47_19310	0.56	-0.4
87,535	-		IAI47_19310	0.56	-1.4
87,560	+		IAI47_19310	0.60	-2.8
87,561	-		IAI47_19310	0.60	-0.8
87,561	-		IAI47_19310	0.60	+0.2
87,579	+		IAI47_19310	0.63	+0.2
87,579	+		IAI47_19310	0.63	-2.4
87,579	+		IAI47_19310	0.63	-0.2
87,579	+		IAI47_19310	0.63	+0.5
87,580	-		IAI47_19310	0.64	+0.2
87,580	-		IAI47_19310	0.64	-0.4
87,580	-		IAI47_19310	0.64	+1.0
87,580	-		IAI47_19310	0.64	+1.6
87,580	-		IAI47_19310	0.64	+0.7
87,580	-		IAI47_19310	0.64	-0.5
87,580	-		IAI47_19310	0.64	+1.0
87,662	+		IAI47_19310	0.78	+0.6
87,663	-		IAI47_19310	0.78	+0.3
87,663	-		IAI47_19310	0.78	-0.4
87,663	-		IAI47_19310	0.78	+0.3
87,677	+		IAI47_19310	0.80	-0.8
87,677	+		IAI47_19310	0.80	-1.1
87,678	-		IAI47_19310	0.80	+0.1
87,739	+				+1.2
87,740	-				-0.8
87,744	+				-0.8
87,764	-				-3.0
87,764	-				+0.2
87,787	-				+0.4
87,811	+				-0.4
87,812	-				+1.5
87,825	-				-0.3
87,825	-				-0.2
87,830	+				+0.5
87,830	+				+0.9
87,830	+				-0.7
87,831	-				-0.0
87,831	-				-0.4
87,831	-				-2.2
87,831	-				-0.1
87,831	-				+1.3
87,852	-				+0.5
87,860	+				+0.9
87,861	-				-0.6
87,881	+				-0.1
87,882	-				-1.4
87,882	-				+0.2
87,882	-				-0.2
87,882	-				+0.2
87,883	+				-0.2
87,883	+				-0.5
87,884	-				+0.6
87,884	-				-0.6
87,884	-				-0.8
87,884	-				-1.4
87,893	+				-0.6
87,893	+				-0.0
87,951	+				-0.4
87,951	+				-0.2
87,951	+				-0.2
87,952	-				-1.0
87,962	-				+0.4
87,962	-				-0.2
87,982	+				+0.2
87,983	-				-0.7
87,995	+				+1.4
87,995	+				+1.2
87,995	+				+0.5
87,995	+				+0.2
87,995	+				+0.6
87,996	-				+1.1
87,996	-				+0.8
87,996	-				-0.6
87,996	-				-0.3
87,996	-				+0.6
87,998	+				-0.4
87,998	+				+0.3
87,998	+				-0.1
87,999	-				+0.6
87,999	-				-1.1
87,999	-				+0.5
87,999	-				+0.2
87,999	-				+2.8
88,005	+				+1.0
88,006	-				-0.0
88,006	-				-0.1
88,006	-				-0.7
88,006	-				-2.4
88,009	+				+0.2
88,051	+				-0.2
88,051	+				-0.8
88,052	-				+0.8
88,052	-				+0.1
88,093	-				+1.3
88,101	-				+0.4
88,107	+				-0.2
88,107	+				+0.0
88,108	-				+0.2
88,108	-				+1.5
88,108	-				+2.2
88,108	-				+0.6
88,117	+				+0.6
88,117	+				-1.0
88,118	-				-0.4
88,118	-				-0.1
88,131	+				-0.0
88,131	+				+0.6
88,131	+				+0.0
88,132	-				+0.4
88,132	-				+0.5
88,162	-				+0.4
88,162	-				+0.4
88,162	-				-0.2
88,162	-				+0.0
88,162	-				-0.7
88,173	+				+0.2
88,210	+				-0.4
88,210	+				+0.7
88,222	-				-0.5
88,267	+				+1.9
88,267	+				+1.2
88,271	+				+0.2
88,279	+				+0.8
88,290	+				-1.4
88,290	+				-0.8
88,291	-				+0.2
88,291	-				+0.8
88,300	+				+0.7
88,314	+				-1.6
88,314	+				-0.1
88,314	+				+1.2
88,314	+				-1.3
88,315	-				+0.4
88,315	-				-0.6
88,317	+				-0.4
88,317	+				+0.4
88,317	+				-1.2
88,317	+				-1.1
88,318	-				-0.9
88,318	-				-0.2
88,365	+		IAI47_19315	0.18	+0.2
88,365	+		IAI47_19315	0.18	+1.2
88,365	+		IAI47_19315	0.18	+1.6
88,432	-		IAI47_19315	0.45	+0.6
88,432	-		IAI47_19315	0.45	+0.0
88,432	-		IAI47_19315	0.45	+0.2
88,454	-		IAI47_19315	0.54	+0.2
88,482	-		IAI47_19315	0.65	-1.2
88,489	+		IAI47_19315	0.68	-1.3
88,490	-		IAI47_19315	0.68	+0.2
88,493	+		IAI47_19315	0.69	-0.1
88,493	+		IAI47_19315	0.69	-0.1
88,494	-		IAI47_19315	0.70	+1.0
88,517	+		IAI47_19315	0.79	+0.8
88,517	+		IAI47_19315	0.79	+0.3
88,517	+		IAI47_19315	0.79	-1.0
88,520	+		IAI47_19315	0.80	-0.8
88,521	-		IAI47_19315	0.81	+0.7
88,521	-		IAI47_19315	0.81	+0.2
88,566	+				+1.0
88,567	-				-0.2
88,570	-				-0.1
88,570	-				+0.8
88,573	-				-0.9
88,582	-				-2.0
88,618	-				-0.2