Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19260 and IAI47_19265 overlap by 4 nucleotides IAI47_19265 and IAI47_19270 are separated by 709 nucleotides
IAI47_19260: IAI47_19260 - ABC transporter permease, at 78,367 to 79,392
_19260
IAI47_19265: IAI47_19265 - xylulokinase, at 79,389 to 80,837
_19265
IAI47_19270: IAI47_19270 - alpha/beta fold hydrolase, at 81,547 to 82,311
_19270
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 78.400 kb on + strand at 78.411 kb on + strand at 78.412 kb on - strand at 78.447 kb on + strand at 78.492 kb on - strand, within IAI47_19260 at 78.492 kb on - strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.682 kb on + strand, within IAI47_19260 at 78.682 kb on + strand, within IAI47_19260 at 78.723 kb on - strand, within IAI47_19260 at 78.723 kb on - strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.878 kb on - strand, within IAI47_19260 at 78.904 kb on - strand, within IAI47_19260 at 78.933 kb on + strand, within IAI47_19260 at 78.949 kb on - strand, within IAI47_19260 at 79.000 kb on - strand, within IAI47_19260 at 79.000 kb on - strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.075 kb on - strand, within IAI47_19260 at 79.075 kb on - strand, within IAI47_19260 at 79.098 kb on + strand, within IAI47_19260 at 79.186 kb on + strand, within IAI47_19260 at 79.248 kb on + strand, within IAI47_19260 at 79.248 kb on + strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.337 kb on - strand at 79.407 kb on + strand at 79.407 kb on + strand at 79.407 kb on + strand at 79.408 kb on - strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.424 kb on + strand at 79.424 kb on + strand at 79.425 kb on - strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.430 kb on - strand at 79.430 kb on - strand at 79.430 kb on - strand at 79.515 kb on - strand at 79.515 kb on - strand at 79.628 kb on - strand, within IAI47_19265 at 79.628 kb on - strand, within IAI47_19265 at 79.772 kb on + strand, within IAI47_19265 at 79.917 kb on + strand, within IAI47_19265 at 79.917 kb on + strand, within IAI47_19265 at 79.953 kb on - strand, within IAI47_19265 at 79.958 kb on + strand, within IAI47_19265 at 79.958 kb on + strand, within IAI47_19265 at 79.959 kb on - strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.997 kb on - strand, within IAI47_19265 at 80.025 kb on + strand, within IAI47_19265 at 80.025 kb on + strand, within IAI47_19265 at 80.039 kb on + strand, within IAI47_19265 at 80.040 kb on - strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.048 kb on - strand, within IAI47_19265 at 80.050 kb on - strand, within IAI47_19265 at 80.073 kb on + strand, within IAI47_19265 at 80.073 kb on + strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.081 kb on + strand, within IAI47_19265 at 80.081 kb on + strand, within IAI47_19265 at 80.082 kb on - strand, within IAI47_19265 at 80.123 kb on + strand, within IAI47_19265 at 80.124 kb on - strand, within IAI47_19265 at 80.124 kb on - strand, within IAI47_19265 at 80.188 kb on - strand, within IAI47_19265 at 80.188 kb on - strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.365 kb on + strand, within IAI47_19265 at 80.365 kb on + strand, within IAI47_19265 at 80.366 kb on - strand, within IAI47_19265 at 80.790 kb on - strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.844 kb on - strand at 80.888 kb on + strand at 80.889 kb on - strand at 80.977 kb on - strand at 80.977 kb on - strand at 80.992 kb on - strand at 80.992 kb on - strand at 80.994 kb on + strand at 80.994 kb on + strand at 80.994 kb on + strand at 80.995 kb on - strand at 81.018 kb on + strand at 81.019 kb on - strand at 81.143 kb on + strand at 81.144 kb on - strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.196 kb on - strand at 81.247 kb on - strand at 81.257 kb on - strand at 81.313 kb on + strand at 81.313 kb on + strand at 81.313 kb on + strand at 81.314 kb on - strand at 81.314 kb on - strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.316 kb on - strand at 81.316 kb on - strand at 81.387 kb on + strand at 81.387 kb on + strand at 81.388 kb on - strand at 81.388 kb on - strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.457 kb on + strand at 81.457 kb on + strand at 81.457 kb on + strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.500 kb on - strand at 81.508 kb on + strand at 81.557 kb on - strand at 81.557 kb on - strand at 81.567 kb on - strand at 81.567 kb on - strand at 81.602 kb on + strand at 81.602 kb on + strand at 81.603 kb on - strand at 81.615 kb on + strand at 81.615 kb on + strand at 81.616 kb on - strand at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 78,400 + +0.9 78,411 + +0.2 78,412 - -1.1 78,447 + +0.2 78,492 - IAI47_19260 0.12 +0.5 78,492 - IAI47_19260 0.12 -0.7 78,567 + IAI47_19260 0.19 +0.6 78,567 + IAI47_19260 0.19 -0.5 78,567 + IAI47_19260 0.19 -0.2 78,680 + IAI47_19260 0.31 +0.6 78,680 + IAI47_19260 0.31 +0.9 78,680 + IAI47_19260 0.31 +2.3 78,681 - IAI47_19260 0.31 +1.1 78,681 - IAI47_19260 0.31 -0.0 78,681 - IAI47_19260 0.31 -0.2 78,681 - IAI47_19260 0.31 -0.6 78,681 - IAI47_19260 0.31 -0.4 78,682 + IAI47_19260 0.31 -0.0 78,682 + IAI47_19260 0.31 -0.6 78,723 - IAI47_19260 0.35 -0.5 78,723 - IAI47_19260 0.35 +3.8 78,794 + IAI47_19260 0.42 +0.4 78,794 + IAI47_19260 0.42 -1.4 78,794 + IAI47_19260 0.42 +0.6 78,794 + IAI47_19260 0.42 +0.3 78,794 + IAI47_19260 0.42 +0.2 78,794 + IAI47_19260 0.42 -0.1 78,794 + IAI47_19260 0.42 -0.2 78,794 + IAI47_19260 0.42 -0.3 78,794 + IAI47_19260 0.42 +2.2 78,794 + IAI47_19260 0.42 +0.2 78,795 - IAI47_19260 0.42 +2.3 78,795 - IAI47_19260 0.42 +0.3 78,795 - IAI47_19260 0.42 -0.2 78,795 - IAI47_19260 0.42 +1.5 78,795 - IAI47_19260 0.42 +0.2 78,795 - IAI47_19260 0.42 -2.6 78,795 - IAI47_19260 0.42 -0.8 78,798 + IAI47_19260 0.42 +1.2 78,798 + IAI47_19260 0.42 -1.6 78,798 + IAI47_19260 0.42 -0.5 78,798 + IAI47_19260 0.42 +0.2 78,798 + IAI47_19260 0.42 -0.8 78,798 + IAI47_19260 0.42 -0.2 78,799 - IAI47_19260 0.42 +1.4 78,799 - IAI47_19260 0.42 -0.8 78,799 - IAI47_19260 0.42 -1.6 78,799 - IAI47_19260 0.42 +0.8 78,878 - IAI47_19260 0.50 -0.2 78,904 - IAI47_19260 0.52 +0.4 78,933 + IAI47_19260 0.55 -0.7 78,949 - IAI47_19260 0.57 -0.5 79,000 - IAI47_19260 0.62 -0.4 79,000 - IAI47_19260 0.62 -1.2 79,074 + IAI47_19260 0.69 +2.4 79,074 + IAI47_19260 0.69 +0.8 79,074 + IAI47_19260 0.69 -0.8 79,074 + IAI47_19260 0.69 +0.2 79,075 - IAI47_19260 0.69 +0.2 79,075 - IAI47_19260 0.69 -1.0 79,098 + IAI47_19260 0.71 +0.6 79,186 + IAI47_19260 0.80 +0.7 79,248 + IAI47_19260 0.86 -1.1 79,248 + IAI47_19260 0.86 +0.3 79,249 - IAI47_19260 0.86 +0.2 79,249 - IAI47_19260 0.86 +0.0 79,249 - IAI47_19260 0.86 +0.8 79,249 - IAI47_19260 0.86 -0.9 79,249 - IAI47_19260 0.86 -2.2 79,337 - +0.2 79,407 + -0.0 79,407 + -0.5 79,407 + +0.2 79,408 - -0.2 79,420 + +0.8 79,420 + -0.0 79,420 + +1.8 79,420 + +1.8 79,421 - -1.8 79,421 - -1.8 79,421 - +0.3 79,421 - +0.5 79,421 - -0.4 79,421 - -0.5 79,421 - +1.1 79,421 - -0.1 79,424 + -0.2 79,424 + +1.2 79,425 - -0.6 79,429 + +0.2 79,429 + -0.1 79,429 + +0.3 79,429 + +0.8 79,429 + +0.9 79,429 + -1.2 79,429 + -1.2 79,430 - +0.2 79,430 - +0.4 79,430 - +0.0 79,515 - +0.5 79,515 - +1.8 79,628 - IAI47_19265 0.16 +0.2 79,628 - IAI47_19265 0.16 +0.7 79,772 + IAI47_19265 0.26 -0.8 79,917 + IAI47_19265 0.36 -0.3 79,917 + IAI47_19265 0.36 +0.9 79,953 - IAI47_19265 0.39 -0.8 79,958 + IAI47_19265 0.39 +1.1 79,958 + IAI47_19265 0.39 -0.2 79,959 - IAI47_19265 0.39 -0.7 79,961 + IAI47_19265 0.39 +0.4 79,961 + IAI47_19265 0.39 -0.0 79,961 + IAI47_19265 0.39 +0.2 79,962 - IAI47_19265 0.40 -0.2 79,962 - IAI47_19265 0.40 -0.6 79,962 - IAI47_19265 0.40 -0.4 79,962 - IAI47_19265 0.40 +0.4 79,962 - IAI47_19265 0.40 +0.8 79,962 - IAI47_19265 0.40 +0.5 79,962 - IAI47_19265 0.40 +0.3 79,997 - IAI47_19265 0.42 +1.0 80,025 + IAI47_19265 0.44 +0.9 80,025 + IAI47_19265 0.44 -0.3 80,039 + IAI47_19265 0.45 -0.3 80,040 - IAI47_19265 0.45 -1.1 80,047 + IAI47_19265 0.45 +0.8 80,047 + IAI47_19265 0.45 -0.0 80,047 + IAI47_19265 0.45 -1.1 80,047 + IAI47_19265 0.45 -1.3 80,047 + IAI47_19265 0.45 -0.2 80,048 - IAI47_19265 0.45 +0.4 80,050 - IAI47_19265 0.46 +0.2 80,073 + IAI47_19265 0.47 +1.2 80,073 + IAI47_19265 0.47 -0.1 80,074 - IAI47_19265 0.47 -0.8 80,074 - IAI47_19265 0.47 -0.6 80,074 - IAI47_19265 0.47 -0.8 80,074 - IAI47_19265 0.47 -0.7 80,075 + IAI47_19265 0.47 -0.2 80,075 + IAI47_19265 0.47 +0.2 80,075 + IAI47_19265 0.47 +2.0 80,075 + IAI47_19265 0.47 +0.2 80,075 + IAI47_19265 0.47 -0.1 80,075 + IAI47_19265 0.47 -0.2 80,075 + IAI47_19265 0.47 +0.9 80,075 + IAI47_19265 0.47 +0.2 80,076 - IAI47_19265 0.47 -0.3 80,076 - IAI47_19265 0.47 -1.8 80,076 - IAI47_19265 0.47 -0.4 80,076 - IAI47_19265 0.47 +0.7 80,076 - IAI47_19265 0.47 -0.2 80,076 - IAI47_19265 0.47 +0.7 80,076 - IAI47_19265 0.47 -2.2 80,081 + IAI47_19265 0.48 +0.2 80,081 + IAI47_19265 0.48 -0.2 80,082 - IAI47_19265 0.48 +0.2 80,123 + IAI47_19265 0.51 +0.2 80,124 - IAI47_19265 0.51 -0.8 80,124 - IAI47_19265 0.51 -2.6 80,188 - IAI47_19265 0.55 -0.2 80,188 - IAI47_19265 0.55 +0.6 80,358 + IAI47_19265 0.67 +0.2 80,358 + IAI47_19265 0.67 +0.4 80,358 + IAI47_19265 0.67 -1.8 80,358 + IAI47_19265 0.67 +0.2 80,358 + IAI47_19265 0.67 -0.6 80,358 + IAI47_19265 0.67 -1.0 80,358 + IAI47_19265 0.67 -2.8 80,359 - IAI47_19265 0.67 -0.1 80,359 - IAI47_19265 0.67 +1.8 80,359 - IAI47_19265 0.67 -0.2 80,365 + IAI47_19265 0.67 -0.1 80,365 + IAI47_19265 0.67 -0.8 80,366 - IAI47_19265 0.67 -0.3 80,790 - -2.0 80,843 + -0.4 80,843 + +0.2 80,843 + -0.8 80,843 + -0.6 80,843 + -1.4 80,843 + -0.4 80,844 - -1.2 80,888 + -0.6 80,889 - +1.2 80,977 - +0.5 80,977 - -0.8 80,992 - +0.3 80,992 - +0.8 80,994 + +0.2 80,994 + -0.8 80,994 + -0.8 80,995 - +0.4 81,018 + -0.5 81,019 - -0.1 81,143 + -1.1 81,144 - +0.5 81,168 + +2.3 81,168 + +0.5 81,168 + +1.2 81,168 + +0.8 81,168 + +0.3 81,168 + +0.6 81,169 - -0.1 81,169 - -0.2 81,169 - +0.3 81,169 - -0.8 81,169 - -0.0 81,169 - +0.4 81,169 - -0.6 81,169 - -1.4 81,169 - +0.8 81,169 - -0.1 81,169 - -1.1 81,196 - -1.8 81,247 - +1.2 81,257 - -1.0 81,313 + +0.7 81,313 + -0.1 81,313 + -0.7 81,314 - -1.2 81,314 - -0.1 81,315 + +0.4 81,315 + -0.6 81,315 + +1.2 81,315 + -1.2 81,316 - +1.3 81,316 - -1.2 81,387 + -0.4 81,387 + +0.6 81,388 - +0.4 81,388 - -0.2 81,389 + -0.8 81,389 + -0.4 81,389 + -0.9 81,389 + -1.3 81,389 + -0.9 81,389 + +0.5 81,389 + -0.4 81,389 + +1.0 81,390 - -1.4 81,390 - -0.4 81,390 - +1.5 81,390 - -0.7 81,390 - +0.4 81,390 - -0.7 81,390 - +0.2 81,457 + -0.6 81,457 + -0.1 81,457 + -0.4 81,458 - +0.4 81,458 - -0.3 81,458 - +2.1 81,500 - +1.8 81,508 + +0.2 81,557 - +1.3 81,557 - +2.8 81,567 - -2.2 81,567 - +1.2 81,602 + +0.6 81,602 + +1.8 81,603 - +1.3 81,615 + -3.2 81,615 + +0.2 81,616 - +0.2 81,685 + IAI47_19270 0.18 -0.2 81,685 + IAI47_19270 0.18 +0.5 81,685 + IAI47_19270 0.18 -1.4 81,685 + IAI47_19270 0.18 +0.5 81,685 + IAI47_19270 0.18 +0.5 81,686 - IAI47_19270 0.18 -0.2 81,686 - IAI47_19270 0.18 -1.8 81,686 - IAI47_19270 0.18 -0.2 81,686 - IAI47_19270 0.18 -0.4 81,686 - IAI47_19270 0.18 -0.7 81,686 - IAI47_19270 0.18 -0.4 81,714 + IAI47_19270 0.22 +1.2 81,714 + IAI47_19270 0.22 +0.7 81,714 + IAI47_19270 0.22 +0.2 81,715 - IAI47_19270 0.22 +0.9 81,715 - IAI47_19270 0.22 +0.2
Or see this region's nucleotide sequence