Strain Fitness in Pantoea sp. MT58 around IAI47_18505

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,935,617	+		IAI47_18500	0.50	-1.1
3,936,419	-		IAI47_18505	0.22	-1.7
3,936,443	-		IAI47_18505	0.24	-1.5
3,936,443	-		IAI47_18505	0.24	-3.3
3,936,589	+		IAI47_18505	0.35	-2.1
3,936,590	-		IAI47_18505	0.35	-0.6
3,936,590	-		IAI47_18505	0.35	-1.8
3,936,611	-		IAI47_18505	0.37	+0.3
3,936,611	-		IAI47_18505	0.37	-2.1
3,936,647	-		IAI47_18505	0.40	-1.7
3,936,742	+		IAI47_18505	0.47	-2.3
3,936,835	-		IAI47_18505	0.55	-1.0
3,936,835	-		IAI47_18505	0.55	-1.6
3,936,837	-		IAI47_18505	0.55	-1.1
3,936,912	-		IAI47_18505	0.61	-1.6
3,936,912	-		IAI47_18505	0.61	-0.9
3,936,912	-		IAI47_18505	0.61	-2.9
3,936,912	-		IAI47_18505	0.61	-0.5
3,936,912	-		IAI47_18505	0.61	+0.3
3,936,912	-		IAI47_18505	0.61	-2.7
3,936,926	+		IAI47_18505	0.62	-0.7
3,936,943	-		IAI47_18505	0.63	+1.7
3,936,956	-		IAI47_18505	0.64	-1.3
3,936,968	-		IAI47_18505	0.65	-1.7
3,936,968	-		IAI47_18505	0.65	-1.3
3,936,968	-		IAI47_18505	0.65	+0.3
3,937,031	-		IAI47_18505	0.70	-3.1
3,937,031	-		IAI47_18505	0.70	-1.5
3,937,135	-		IAI47_18505	0.78	-0.3
3,937,135	-		IAI47_18505	0.78	-2.0
3,937,135	-		IAI47_18505	0.78	-1.1
3,937,245	-		IAI47_18505	0.87	-1.5
3,937,245	-		IAI47_18505	0.87	-0.7
3,937,245	-		IAI47_18505	0.87	-1.5
3,937,257	-		IAI47_18505	0.88	-1.7
3,937,257	-		IAI47_18505	0.88	-2.5
3,937,257	-		IAI47_18505	0.88	-0.6
3,937,257	-		IAI47_18505	0.88	-0.1
3,937,257	-		IAI47_18505	0.88	-0.7
3,937,257	-		IAI47_18505	0.88	-0.7
3,937,257	-		IAI47_18505	0.88	-2.3
3,937,369	-				-1.0
3,937,369	-				-0.7
3,937,369	-				-3.2
3,937,369	-				-0.3
3,937,369	-				-0.6
3,937,405	+				-1.4
3,937,406	-				-0.3
3,937,419	+				-1.7
3,937,420	-				+1.4
3,937,427	-				+0.5
3,937,427	-				-0.1
3,937,466	+				-2.9
3,937,473	+				+0.3
3,937,573	-		IAI47_18510	0.15	-1.0
3,937,629	+		IAI47_18510	0.20	-0.3
3,937,715	+		IAI47_18510	0.27	-0.9
3,937,715	+		IAI47_18510	0.27	+0.0
3,937,715	+		IAI47_18510	0.27	-1.6
3,937,716	-		IAI47_18510	0.27	-1.3
3,937,716	-		IAI47_18510	0.27	+0.3
3,937,740	+		IAI47_18510	0.29	-2.1
3,937,740	+		IAI47_18510	0.29	-1.7
3,937,741	-		IAI47_18510	0.30	+0.8
3,937,741	-		IAI47_18510	0.30	-1.7
3,937,741	-		IAI47_18510	0.30	-1.7
3,937,742	-		IAI47_18510	0.30	-2.1
3,937,806	-		IAI47_18510	0.35	+0.5
3,937,860	+		IAI47_18510	0.40	-0.1
3,937,860	+		IAI47_18510	0.40	-1.1
3,937,860	+		IAI47_18510	0.40	-2.4
3,937,861	-		IAI47_18510	0.40	+1.3
3,937,861	-		IAI47_18510	0.40	-1.4
3,938,019	+		IAI47_18510	0.54	-1.4
3,938,020	-		IAI47_18510	0.54	-1.9
3,938,020	-		IAI47_18510	0.54	-2.3
3,938,020	-		IAI47_18510	0.54	-1.7
3,938,088	+		IAI47_18510	0.60	+0.3
3,938,211	-		IAI47_18510	0.70	-0.1
3,938,211	-		IAI47_18510	0.70	-2.6
3,938,308	+		IAI47_18510	0.79	-1.5
3,938,322	+		IAI47_18510	0.80	-1.7
3,938,322	+		IAI47_18510	0.80	-1.7
3,938,322	+		IAI47_18510	0.80	+0.3
3,938,323	-		IAI47_18510	0.80	+0.3
3,938,323	-		IAI47_18510	0.80	-0.1
3,938,323	-		IAI47_18510	0.80	+0.9
3,938,323	-		IAI47_18510	0.80	-0.6
3,938,323	-		IAI47_18510	0.80	-1.7
3,938,323	-		IAI47_18510	0.80	+0.0
3,938,352	+		IAI47_18510	0.83	-0.4
3,938,352	+		IAI47_18510	0.83	-1.7
3,938,352	+		IAI47_18510	0.83	-2.3
3,938,353	-		IAI47_18510	0.83	-1.7
3,938,353	-		IAI47_18510	0.83	-0.7
3,938,353	-		IAI47_18510	0.83	-0.3
3,938,353	-		IAI47_18510	0.83	+1.7
3,938,353	-		IAI47_18510	0.83	-0.3
3,938,353	-		IAI47_18510	0.83	-1.8
3,938,353	-		IAI47_18510	0.83	+0.3
3,938,355	+		IAI47_18510	0.83	+0.3
3,938,355	+		IAI47_18510	0.83	-1.0
3,938,355	+		IAI47_18510	0.83	-1.3
3,938,355	+		IAI47_18510	0.83	-3.3
3,938,355	+		IAI47_18510	0.83	-2.0
3,938,356	-		IAI47_18510	0.83	-0.9
3,938,356	-		IAI47_18510	0.83	-0.7
3,938,356	-		IAI47_18510	0.83	-0.3
3,938,356	-		IAI47_18510	0.83	-2.1
3,938,356	-		IAI47_18510	0.83	-1.5
3,938,356	-		IAI47_18510	0.83	-2.4
3,938,356	-		IAI47_18510	0.83	-1.3
3,938,358	+		IAI47_18510	0.83	-2.4
3,938,358	+		IAI47_18510	0.83	-3.5
3,938,358	+		IAI47_18510	0.83	-2.8
3,938,358	+		IAI47_18510	0.83	-1.7
3,938,358	+		IAI47_18510	0.83	-1.7
3,938,359	-		IAI47_18510	0.83	-2.1
3,938,359	-		IAI47_18510	0.83	-2.3
3,938,359	-		IAI47_18510	0.83	-0.9
3,938,359	-		IAI47_18510	0.83	-1.6
3,938,367	-		IAI47_18510	0.84	-0.7
3,938,367	-		IAI47_18510	0.84	-0.5