Strain Fitness in Pantoea sp. MT58 around IAI47_17715

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,761,572	+		IAI47_17710	0.70	-0.7
3,761,572	+		IAI47_17710	0.70	-0.3
3,761,573	-		IAI47_17710	0.70	+1.3
3,761,573	-		IAI47_17710	0.70	-1.1
3,761,573	-		IAI47_17710	0.70	+0.8
3,761,594	+		IAI47_17710	0.71	-0.2
3,761,594	+		IAI47_17710	0.71	+1.0
3,761,595	-		IAI47_17710	0.71	-0.9
3,761,595	-		IAI47_17710	0.71	-0.7
3,761,595	-		IAI47_17710	0.71	-1.5
3,761,595	-		IAI47_17710	0.71	-0.9
3,761,595	-		IAI47_17710	0.71	+1.0
3,761,595	-		IAI47_17710	0.71	-1.4
3,761,595	-		IAI47_17710	0.71	-2.2
3,761,595	-		IAI47_17710	0.71	-0.6
3,761,598	+		IAI47_17710	0.72	+0.1
3,761,598	+		IAI47_17710	0.72	-1.5
3,761,599	-		IAI47_17710	0.72	-0.6
3,761,628	+		IAI47_17710	0.74	+0.3
3,761,628	+		IAI47_17710	0.74	-1.3
3,761,628	+		IAI47_17710	0.74	+0.3
3,761,628	+		IAI47_17710	0.74	-0.7
3,761,628	+		IAI47_17710	0.74	+1.3
3,761,628	+		IAI47_17710	0.74	-1.3
3,761,628	+		IAI47_17710	0.74	+0.9
3,761,628	+		IAI47_17710	0.74	-0.3
3,761,628	+		IAI47_17710	0.74	+1.3
3,761,628	+		IAI47_17710	0.74	-0.7
3,761,628	+		IAI47_17710	0.74	-0.4
3,761,628	+		IAI47_17710	0.74	+0.6
3,761,628	+		IAI47_17710	0.74	-0.3
3,761,629	-		IAI47_17710	0.74	-1.6
3,761,629	-		IAI47_17710	0.74	-1.0
3,761,629	-		IAI47_17710	0.74	-0.3
3,761,629	-		IAI47_17710	0.74	+0.3
3,761,629	-		IAI47_17710	0.74	-0.3
3,761,629	-		IAI47_17710	0.74	+0.3
3,761,629	-		IAI47_17710	0.74	-0.8
3,761,653	+		IAI47_17710	0.76	-0.4
3,761,653	+		IAI47_17710	0.76	-1.0
3,761,653	+		IAI47_17710	0.76	+1.2
3,761,654	-		IAI47_17710	0.76	-0.7
3,761,668	-		IAI47_17710	0.77	-1.0
3,761,668	-		IAI47_17710	0.77	-0.3
3,761,670	+		IAI47_17710	0.77	-0.7
3,761,708	+		IAI47_17710	0.80	-2.7
3,761,708	+		IAI47_17710	0.80	-1.7
3,761,708	+		IAI47_17710	0.80	+0.3
3,761,708	+		IAI47_17710	0.80	+0.7
3,761,708	+		IAI47_17710	0.80	-0.7
3,761,709	-		IAI47_17710	0.80	-1.3
3,761,814	+		IAI47_17710	0.88	-0.3
3,761,814	+		IAI47_17710	0.88	+0.3
3,761,814	+		IAI47_17710	0.88	-0.9
3,761,815	-		IAI47_17710	0.88	-0.7
3,761,815	-		IAI47_17710	0.88	-0.1
3,761,823	+		IAI47_17710	0.89	+0.6
3,761,823	+		IAI47_17710	0.89	+1.0
3,761,823	+		IAI47_17710	0.89	-0.7
3,761,823	+		IAI47_17710	0.89	-0.3
3,761,823	+		IAI47_17710	0.89	+0.3
3,761,824	-		IAI47_17710	0.89	-1.5
3,761,824	-		IAI47_17710	0.89	+1.6
3,761,824	-		IAI47_17710	0.89	-1.0
3,761,824	-		IAI47_17710	0.89	-2.3
3,761,830	-		IAI47_17710	0.89	-0.3
3,761,830	-		IAI47_17710	0.89	-1.1
3,761,886	+				+0.6
3,761,893	+				+0.9
3,761,893	+				-0.4
3,761,893	+				-2.2
3,761,893	+				-0.3
3,761,893	+				-1.0
3,761,894	-				+1.0
3,761,894	-				-0.1
3,761,894	-				-0.4
3,761,894	-				-1.5
3,761,968	-				-2.0
3,761,968	-				-0.4
3,761,974	+				-0.7
3,761,974	+				-0.7
3,761,974	+				-0.3
3,762,004	+				+1.4
3,762,005	-				+0.3
3,762,027	+				+0.3
3,762,027	+				+0.3
3,762,027	+				-2.0
3,762,027	+				+0.5
3,762,027	+				-1.3
3,762,027	+				+0.2
3,762,028	-				-0.7
3,762,028	-				-0.0
3,762,028	-				+0.5
3,762,028	-				+0.4
3,762,061	+				-0.4
3,762,062	-				+0.6
3,762,072	+				-0.7
3,762,073	-				+0.3
3,762,088	+				+0.7
3,762,139	+				+1.9
3,762,139	+				-1.0
3,762,139	+				-1.7
3,762,139	+				-1.3
3,762,139	+				-0.4
3,762,140	-				+0.8
3,762,140	-				+0.0
3,762,161	+				-1.3
3,762,161	+				-1.8
3,762,161	+				-2.7
3,762,161	+				-2.3
3,762,161	+				-1.0
3,762,161	+				-0.0
3,762,161	+				+0.1
3,762,162	-				+0.3
3,762,162	-				+0.0
3,762,162	-				+0.6
3,762,162	-				-1.1
3,762,162	-				+0.3
3,762,162	-				+1.0
3,762,162	-				-1.8
3,762,162	-				+1.5
3,762,162	-				+0.1
3,762,165	+				-1.0
3,762,166	-				-1.0
3,762,166	-				+1.9
3,762,182	+				+2.5
3,762,183	-				+1.5
3,762,223	+				+2.2
3,762,223	+				-0.7
3,762,223	+				-0.2
3,762,224	-				-0.7
3,762,224	-				+0.7
3,762,232	+				+1.3
3,762,232	+				+0.6
3,762,233	-				+0.7
3,762,233	-				+0.3
3,762,255	+				-0.1
3,762,255	+				+0.7
3,762,280	-				+0.6
3,762,282	+				-1.4
3,762,282	+				+0.3
3,762,283	-				+2.5
3,762,286	+				+0.2
3,762,286	+				-0.2
3,762,286	+				-0.8
3,762,287	-				-0.2
3,762,287	-				-0.5
3,762,287	-				+0.3
3,762,287	-				-1.5
3,762,287	-				+1.6
3,762,296	+				-1.1
3,762,302	+				-1.3
3,762,302	+				+0.3
3,762,302	+				-1.1
3,762,302	+				-0.2
3,762,302	+				+0.1
3,762,302	+				+1.1
3,762,302	+				-0.9
3,762,302	+				-0.1
3,762,303	-				-1.0
3,762,303	-				+0.3
3,762,303	-				+0.8
3,762,303	-				-0.1
3,762,303	-				-1.5
3,762,303	-				-1.3
3,762,303	-				+0.3
3,762,306	+				-0.2
3,762,306	+				+0.8
3,762,306	+				-0.7
3,762,307	-				+0.6
3,762,307	-				+1.3
3,762,307	-				+0.1
3,762,307	-				+0.9
3,762,307	-				+0.3
3,762,313	+				-2.3
3,762,313	+				+0.3
3,762,313	+				+1.3
3,762,313	+				+0.6
3,762,313	+				-1.3
3,762,321	-				+1.3
3,762,353	-				+1.0
3,762,374	+				-0.8
3,762,374	+				-0.4
3,762,384	+				+0.4
3,762,384	+				+0.1
3,762,384	+				+0.4
3,762,384	+				-0.7
3,762,384	+				-1.5
3,762,385	-				-0.1
3,762,385	-				-0.4
3,762,385	-				-0.3
3,762,385	-				+0.1
3,762,385	-				+1.0
3,762,415	-				+1.9
3,762,419	+				+1.3
3,762,454	+				-0.6
3,762,455	-				+0.6
3,762,524	+				-0.1
3,762,588	+				-0.9
3,762,589	-				+0.2
3,762,589	-				-2.3
3,762,609	+				-0.3
3,762,622	+				+0.3
3,762,622	+				-0.9
3,762,622	+				-1.9
3,762,623	-				-0.4
3,762,623	-				-0.7
3,762,623	-				-2.0
3,762,634	+				-0.3
3,762,634	+				-1.3
3,762,634	+				-0.0
3,762,634	+				+0.8
3,762,634	+				-0.7
3,762,634	+				-2.3
3,762,635	-				-1.0
3,762,635	-				-1.2
3,762,635	-				-1.4
3,762,635	-				+0.0
3,762,699	+				-0.3
3,762,699	+				+0.1
3,762,699	+				-1.2
3,762,699	+				-0.1
3,762,700	-				-1.3
3,762,700	-				-0.5
3,762,700	-				-0.5
3,762,706	+				-0.3
3,762,706	+				+0.3
3,762,707	-				-1.7
3,762,707	-				-1.2
3,762,707	-				+0.3
3,762,707	-				-0.3
3,762,707	-				-1.3
3,762,707	-				-1.4
3,762,707	-				-0.6
3,762,741	+				-1.5
3,762,741	+				+0.0
3,762,741	+				-1.7
3,762,742	-				-1.7
3,762,742	-				-1.3
3,762,742	-				-0.1
3,762,747	+				-1.5
3,762,747	+				-0.7
3,762,747	+				-1.0
3,762,747	+				-3.0
3,762,747	+				+0.3
3,762,747	+				-1.6
3,762,748	-				+0.6
3,762,748	-				-0.9
3,762,748	-				-0.6
3,762,748	-				+0.6
3,762,748	-				-1.0
3,762,837	+		IAI47_17715	0.15	-0.7
3,762,837	+		IAI47_17715	0.15	-0.4
3,762,837	+		IAI47_17715	0.15	-1.5
3,762,837	+		IAI47_17715	0.15	+1.9
3,762,837	+		IAI47_17715	0.15	-1.1
3,762,838	-		IAI47_17715	0.15	-1.3
3,762,964	+		IAI47_17715	0.21	+0.3
3,762,964	+		IAI47_17715	0.21	-1.3
3,762,964	+		IAI47_17715	0.21	-1.2
3,762,964	+		IAI47_17715	0.21	-0.1
3,762,964	+		IAI47_17715	0.21	+0.3
3,762,964	+		IAI47_17715	0.21	-1.7
3,762,964	+		IAI47_17715	0.21	-1.6
3,762,964	+		IAI47_17715	0.21	+0.3
3,762,964	+		IAI47_17715	0.21	-0.5
3,762,964	+		IAI47_17715	0.21	-0.4
3,762,964	+		IAI47_17715	0.21	+0.3
3,762,964	+		IAI47_17715	0.21	+0.7
3,762,964	+		IAI47_17715	0.21	-0.1
3,762,964	+		IAI47_17715	0.21	-1.4
3,762,964	+		IAI47_17715	0.21	-1.3
3,762,964	+		IAI47_17715	0.21	-1.9
3,762,964	+		IAI47_17715	0.21	-1.3
3,762,964	+		IAI47_17715	0.21	-0.4
3,762,964	+		IAI47_17715	0.21	-0.9
3,762,964	+		IAI47_17715	0.21	-1.7
3,762,964	+		IAI47_17715	0.21	-0.7
3,762,964	+		IAI47_17715	0.21	+0.9
3,762,965	-		IAI47_17715	0.21	-2.3
3,762,965	-		IAI47_17715	0.21	+0.3
3,762,965	-		IAI47_17715	0.21	+0.7
3,762,965	-		IAI47_17715	0.21	-1.7
3,762,965	-		IAI47_17715	0.21	+2.9
3,762,965	-		IAI47_17715	0.21	-1.0
3,762,965	-		IAI47_17715	0.21	-1.5
3,762,965	-		IAI47_17715	0.21	-1.7
3,762,965	-		IAI47_17715	0.21	-0.7
3,762,965	-		IAI47_17715	0.21	-0.5
3,762,965	-		IAI47_17715	0.21	-0.3
3,762,965	-		IAI47_17715	0.21	-0.9
3,762,965	-		IAI47_17715	0.21	-0.7
3,762,965	-		IAI47_17715	0.21	-0.9
3,762,965	-		IAI47_17715	0.21	-0.1
3,762,966	+		IAI47_17715	0.21	-0.4
3,762,966	+		IAI47_17715	0.21	+0.3
3,762,966	+		IAI47_17715	0.21	+0.9
3,763,014	+		IAI47_17715	0.24	-0.0
3,763,014	+		IAI47_17715	0.24	-0.9
3,763,015	-		IAI47_17715	0.24	+1.0
3,763,015	-		IAI47_17715	0.24	-1.4
3,763,015	-		IAI47_17715	0.24	+0.3
3,763,015	-		IAI47_17715	0.24	-2.5
3,763,015	-		IAI47_17715	0.24	-1.3
3,763,075	-		IAI47_17715	0.27	-1.1
3,763,333	-		IAI47_17715	0.40	+2.3
3,763,339	+		IAI47_17715	0.40	+0.3
3,763,339	+		IAI47_17715	0.40	-0.6
3,763,339	+		IAI47_17715	0.40	-0.6
3,763,339	+		IAI47_17715	0.40	-0.3
3,763,340	-		IAI47_17715	0.40	-1.0
3,763,340	-		IAI47_17715	0.40	-2.5
3,763,341	+		IAI47_17715	0.40	+0.3
3,763,341	+		IAI47_17715	0.40	-1.6
3,763,341	+		IAI47_17715	0.40	-2.0
3,763,341	+		IAI47_17715	0.40	-0.5
3,763,341	+		IAI47_17715	0.40	-2.3
3,763,341	+		IAI47_17715	0.40	-0.4
3,763,341	+		IAI47_17715	0.40	-1.1
3,763,342	-		IAI47_17715	0.40	-0.5
3,763,342	-		IAI47_17715	0.40	-2.3
3,763,342	-		IAI47_17715	0.40	-0.7
3,763,342	-		IAI47_17715	0.40	+0.3
3,763,365	+		IAI47_17715	0.42	-0.7
3,763,366	-		IAI47_17715	0.42	+1.5
3,763,366	-		IAI47_17715	0.42	-1.9
3,763,366	-		IAI47_17715	0.42	-1.7
3,763,366	-		IAI47_17715	0.42	+1.3
3,763,366	-		IAI47_17715	0.42	-0.0
3,763,380	+		IAI47_17715	0.42	-0.4
3,763,380	+		IAI47_17715	0.42	+1.3
3,763,381	-		IAI47_17715	0.42	-0.4
3,763,381	-		IAI47_17715	0.42	+0.5
3,763,381	-		IAI47_17715	0.42	+0.3
3,763,394	-		IAI47_17715	0.43	-0.4
3,763,402	+		IAI47_17715	0.43	-0.1
3,763,403	-		IAI47_17715	0.43	+0.3
3,763,403	-		IAI47_17715	0.43	+0.3
3,763,403	-		IAI47_17715	0.43	-1.5
3,763,419	+		IAI47_17715	0.44	-0.9
3,763,419	+		IAI47_17715	0.44	+0.6
3,763,419	+		IAI47_17715	0.44	+1.3
3,763,419	+		IAI47_17715	0.44	-0.8
3,763,419	+		IAI47_17715	0.44	-0.3
3,763,420	-		IAI47_17715	0.44	-0.4
3,763,435	+		IAI47_17715	0.45	-1.3
3,763,435	+		IAI47_17715	0.45	-0.1
3,763,436	-		IAI47_17715	0.45	-0.1
3,763,449	+		IAI47_17715	0.46	+0.3
3,763,449	+		IAI47_17715	0.46	+0.0
3,763,449	+		IAI47_17715	0.46	-0.8
3,763,449	+		IAI47_17715	0.46	-0.1
3,763,449	+		IAI47_17715	0.46	+0.9
3,763,449	+		IAI47_17715	0.46	+1.0
3,763,450	-		IAI47_17715	0.46	-0.7
3,763,450	-		IAI47_17715	0.46	-0.9
3,763,450	-		IAI47_17715	0.46	-0.9
3,763,450	-		IAI47_17715	0.46	+1.0
3,763,450	-		IAI47_17715	0.46	-0.2
3,763,450	-		IAI47_17715	0.46	-0.3
3,763,450	-		IAI47_17715	0.46	+0.3
3,763,450	-		IAI47_17715	0.46	-1.0
3,763,450	-		IAI47_17715	0.46	-0.3
3,763,450	-		IAI47_17715	0.46	-0.7
3,763,450	-		IAI47_17715	0.46	+0.0
3,763,450	-		IAI47_17715	0.46	-1.9
3,763,450	-		IAI47_17715	0.46	+0.3
3,763,450	-		IAI47_17715	0.46	-0.5
3,763,453	+		IAI47_17715	0.46	-0.3
3,763,453	+		IAI47_17715	0.46	+0.3
3,763,453	+		IAI47_17715	0.46	-0.3
3,763,453	+		IAI47_17715	0.46	-1.7
3,763,453	+		IAI47_17715	0.46	-1.5
3,763,453	+		IAI47_17715	0.46	-0.6
3,763,453	+		IAI47_17715	0.46	+0.3
3,763,453	+		IAI47_17715	0.46	-0.9
3,763,454	-		IAI47_17715	0.46	-0.1
3,763,454	-		IAI47_17715	0.46	-1.6
3,763,454	-		IAI47_17715	0.46	+0.7
3,763,454	-		IAI47_17715	0.46	-0.6
3,763,454	-		IAI47_17715	0.46	-1.5
3,763,454	-		IAI47_17715	0.46	-0.3
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3,765,168	-		IAI47_17725	0.12	-0.3
3,765,168	-		IAI47_17725	0.12	+0.6
3,765,184	+		IAI47_17725	0.13	-0.4
3,765,184	+		IAI47_17725	0.13	+1.3
3,765,185	-		IAI47_17725	0.13	+0.4
3,765,266	+		IAI47_17725	0.18	+0.0
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3,765,267	-		IAI47_17725	0.18	+0.9
3,765,267	-		IAI47_17725	0.18	+1.0
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3,765,294	-		IAI47_17725	0.19	-0.9
3,765,336	+		IAI47_17725	0.22	+0.7
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3,765,494	-		IAI47_17725	0.31	+0.3
3,765,494	-		IAI47_17725	0.31	-1.3