Strain Fitness in Pantoea sp. MT58 around IAI47_15845

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,343,909	+		IAI47_15835	0.76	+0.4
3,343,909	+		IAI47_15835	0.76	-0.3
3,343,909	+		IAI47_15835	0.76	-0.8
3,343,909	+		IAI47_15835	0.76	-1.1
3,343,909	+		IAI47_15835	0.76	-1.3
3,343,909	+		IAI47_15835	0.76	-0.6
3,343,909	+		IAI47_15835	0.76	+1.4
3,343,909	+		IAI47_15835	0.76	-1.8
3,343,909	+		IAI47_15835	0.76	-0.1
3,343,910	-		IAI47_15835	0.76	-2.3
3,343,910	-		IAI47_15835	0.76	+0.1
3,343,910	-		IAI47_15835	0.76	-0.5
3,343,910	-		IAI47_15835	0.76	-1.3
3,343,910	-		IAI47_15835	0.76	-0.8
3,343,910	-		IAI47_15835	0.76	-1.0
3,343,912	+		IAI47_15835	0.76	-0.8
3,343,913	-		IAI47_15835	0.76	+0.6
3,343,913	-		IAI47_15835	0.76	+0.4
3,343,989	+		IAI47_15835	0.85	-0.4
3,343,989	+		IAI47_15835	0.85	+0.7
3,343,990	-		IAI47_15835	0.85	-0.1
3,344,068	-				+1.0
3,344,068	-				-0.3
3,344,086	+				-1.8
3,344,087	-				+0.2
3,344,103	+				+0.0
3,344,103	+				-0.3
3,344,104	-				-1.5
3,344,104	-				+0.1
3,344,115	+				+0.0
3,344,163	+				+1.4
3,344,164	-				+0.3
3,344,164	-				+0.5
3,344,164	-				-0.5
3,344,164	-				-2.1
3,344,164	-				-0.2
3,344,166	+				+0.9
3,344,166	+				-1.1
3,344,166	+				+0.2
3,344,166	+				+0.1
3,344,166	+				-1.8
3,344,167	-				-0.8
3,344,204	+		IAI47_15840	0.13	-2.3
3,344,233	+		IAI47_15840	0.18	+0.2
3,344,233	+		IAI47_15840	0.18	+0.0
3,344,233	+		IAI47_15840	0.18	+0.2
3,344,234	-		IAI47_15840	0.18	-0.6
3,344,234	-		IAI47_15840	0.18	-0.9
3,344,234	-		IAI47_15840	0.18	+0.6
3,344,234	-		IAI47_15840	0.18	+0.2
3,344,234	-		IAI47_15840	0.18	-0.4
3,344,276	+		IAI47_15840	0.26	-0.2
3,344,277	-		IAI47_15840	0.26	-0.1
3,344,277	-		IAI47_15840	0.26	-0.1
3,344,309	-		IAI47_15840	0.32	+1.2
3,344,309	-		IAI47_15840	0.32	+0.9
3,344,310	+		IAI47_15840	0.32	-0.1
3,344,311	-		IAI47_15840	0.32	+0.2
3,344,345	+		IAI47_15840	0.39	+0.5
3,344,345	+		IAI47_15840	0.39	-1.3
3,344,346	-		IAI47_15840	0.39	+0.2
3,344,348	-		IAI47_15840	0.39	+2.0
3,344,348	-		IAI47_15840	0.39	-0.6
3,344,411	-		IAI47_15840	0.51	+1.4
3,344,411	-		IAI47_15840	0.51	-0.4
3,344,411	-		IAI47_15840	0.51	+0.5
3,344,424	+		IAI47_15840	0.53	-2.3
3,344,424	+		IAI47_15840	0.53	+1.0
3,344,424	+		IAI47_15840	0.53	-0.3
3,344,425	-		IAI47_15840	0.53	-0.2
3,344,425	-		IAI47_15840	0.53	+0.2
3,344,496	+		IAI47_15840	0.66	-1.1
3,344,496	+		IAI47_15840	0.66	-1.2
3,344,578	+		IAI47_15840	0.81	-0.9
3,344,578	+		IAI47_15840	0.81	-0.9
3,344,579	-		IAI47_15840	0.81	+0.2
3,344,683	+				+0.6
3,344,715	+				-0.2
3,344,715	+				-2.6
3,344,716	-				-0.6
3,344,716	-				+0.1
3,344,724	+				-2.8
3,344,724	+				+0.4
3,344,724	+				+2.1
3,344,725	-				+0.8
3,344,725	-				+0.1
3,344,725	-				-0.6
3,344,727	+				-0.3
3,344,745	+				+1.4
3,344,745	+				-0.8
3,344,745	+				+1.2
3,344,746	-				-0.8
3,344,746	-				+1.2
3,344,746	-				-0.1
3,344,746	-				+0.5
3,344,746	-				-0.3
3,344,746	-				-0.9
3,344,800	+				+1.0
3,344,836	+				+0.2
3,344,836	+				-0.1
3,344,836	+				-0.4
3,344,871	+				-0.5
3,344,872	-				-1.3
3,344,880	+				+1.2
3,344,880	+				-1.6
3,344,880	+				-0.6
3,344,880	+				-2.3
3,344,880	+				+1.2
3,344,880	+				+0.4
3,344,881	-				+0.2
3,344,881	-				-2.6
3,344,896	+				-1.6
3,344,972	+		IAI47_15845	0.10	-0.4
3,344,972	+		IAI47_15845	0.10	-0.5
3,344,972	+		IAI47_15845	0.10	-1.8
3,344,973	-		IAI47_15845	0.10	-2.1
3,344,973	-		IAI47_15845	0.10	+0.2
3,345,015	+		IAI47_15845	0.15	-1.0
3,345,015	+		IAI47_15845	0.15	-0.8
3,345,015	+		IAI47_15845	0.15	-0.0
3,345,015	+		IAI47_15845	0.15	-1.1
3,345,015	+		IAI47_15845	0.15	-0.3
3,345,015	+		IAI47_15845	0.15	-0.5
3,345,015	+		IAI47_15845	0.15	-0.2
3,345,016	-		IAI47_15845	0.15	-0.3
3,345,016	-		IAI47_15845	0.15	-0.5
3,345,016	-		IAI47_15845	0.15	+1.5
3,345,030	-		IAI47_15845	0.17	-1.3
3,345,030	-		IAI47_15845	0.17	-1.1
3,345,289	+		IAI47_15845	0.45	-0.9
3,345,336	+		IAI47_15845	0.51	-1.5
3,345,336	+		IAI47_15845	0.51	+0.2
3,345,337	-		IAI47_15845	0.51	-3.3
3,345,337	-		IAI47_15845	0.51	-2.3
3,345,366	+		IAI47_15845	0.54	-0.8
3,345,366	+		IAI47_15845	0.54	+2.6
3,345,366	+		IAI47_15845	0.54	-1.1
3,345,366	+		IAI47_15845	0.54	-1.2
3,345,366	+		IAI47_15845	0.54	+0.0
3,345,367	-		IAI47_15845	0.54	+1.8
3,345,370	+		IAI47_15845	0.55	+0.2
3,345,370	+		IAI47_15845	0.55	-1.0
3,345,371	-		IAI47_15845	0.55	-0.2
3,345,424	+		IAI47_15845	0.61	-0.3
3,345,425	-		IAI47_15845	0.61	-2.2
3,345,432	+		IAI47_15845	0.61	-2.0
3,345,442	+		IAI47_15845	0.63	-0.4
3,345,444	+		IAI47_15845	0.63	-0.2
3,345,444	+		IAI47_15845	0.63	-1.7
3,345,444	+		IAI47_15845	0.63	-1.2
3,345,444	+		IAI47_15845	0.63	-1.2
3,345,444	+		IAI47_15845	0.63	-1.2
3,345,444	+		IAI47_15845	0.63	-0.2
3,345,444	+		IAI47_15845	0.63	-1.3
3,345,445	-		IAI47_15845	0.63	-0.3
3,345,445	-		IAI47_15845	0.63	-0.8
3,345,445	-		IAI47_15845	0.63	-1.3
3,345,445	-		IAI47_15845	0.63	-0.6
3,345,445	-		IAI47_15845	0.63	+1.0
3,345,445	-		IAI47_15845	0.63	-0.5
3,345,445	-		IAI47_15845	0.63	-0.8
3,345,445	-		IAI47_15845	0.63	+1.2
3,345,445	-		IAI47_15845	0.63	-1.1
3,345,447	+		IAI47_15845	0.63	+0.2
3,345,447	+		IAI47_15845	0.63	-1.9
3,345,448	-		IAI47_15845	0.63	-0.2
3,345,448	-		IAI47_15845	0.63	-1.4
3,345,448	-		IAI47_15845	0.63	-1.0
3,345,448	-		IAI47_15845	0.63	-0.3
3,345,570	+		IAI47_15845	0.77	-1.0
3,345,571	-		IAI47_15845	0.77	-1.5
3,345,571	-		IAI47_15845	0.77	-1.3
3,345,586	-		IAI47_15845	0.79	+0.2
3,345,706	+				-2.1
3,345,706	+				-1.9
3,345,706	+				-0.8
3,345,706	+				-1.6
3,345,706	+				-1.1
3,345,706	+				-0.8
3,345,706	+				-1.1
3,345,706	+				-1.6
3,345,706	+				-1.4
3,345,707	-				-1.1
3,345,707	-				-2.8
3,345,707	-				-0.4
3,345,707	-				+0.8
3,345,707	-				-1.3
3,345,707	-				-0.0
3,345,707	-				+0.2
3,345,756	+				-0.1
3,345,756	+				-0.2
3,345,757	-				-0.1
3,345,757	-				+0.2
3,345,776	-				-0.4
3,345,790	+				+0.2
3,345,791	-				+0.5
3,345,902	+				-0.0
3,345,902	+				-1.3
3,345,902	+				-0.9
3,345,903	-				-0.4
3,345,903	-				+0.1
3,345,908	+				-0.3
3,345,909	-				-0.1
3,345,919	-				+1.4
3,345,934	+				-1.6
3,345,935	-				+1.8
3,345,935	-				+0.1
3,345,972	+				+0.0
3,345,972	+				-0.4
3,345,972	+				+1.0
3,345,973	-				+0.0
3,345,973	-				-0.3
3,346,016	+		IAI47_15850	0.14	+2.2
3,346,016	+		IAI47_15850	0.14	-0.8
3,346,017	-		IAI47_15850	0.14	+0.2
3,346,017	-		IAI47_15850	0.14	+0.0
3,346,017	-		IAI47_15850	0.14	+1.0
3,346,017	-		IAI47_15850	0.14	-1.6
3,346,017	-		IAI47_15850	0.14	-0.1
3,346,017	-		IAI47_15850	0.14	+0.2
3,346,017	-		IAI47_15850	0.14	-0.4
3,346,017	-		IAI47_15850	0.14	-0.8
3,346,017	-		IAI47_15850	0.14	-0.1
3,346,017	-		IAI47_15850	0.14	-0.4
3,346,048	+		IAI47_15850	0.21	+0.1
3,346,049	-		IAI47_15850	0.21	+0.2
3,346,049	-		IAI47_15850	0.21	-0.8
3,346,109	+		IAI47_15850	0.34	-0.3
3,346,109	+		IAI47_15850	0.34	-0.0
3,346,192	+		IAI47_15850	0.53	+0.4
3,346,192	+		IAI47_15850	0.53	-0.0
3,346,192	+		IAI47_15850	0.53	-1.9
3,346,192	+		IAI47_15850	0.53	-0.3
3,346,192	+		IAI47_15850	0.53	+0.6
3,346,193	-		IAI47_15850	0.53	-1.1
3,346,193	-		IAI47_15850	0.53	-0.4
3,346,330	-		IAI47_15850	0.83	-0.8
3,346,339	-		IAI47_15850	0.85	+0.7
3,346,381	-				-1.1
3,346,425	+				+1.2
3,346,425	+				+1.1
3,346,425	+				+1.7
3,346,425	+				-0.0
3,346,452	+				-0.8
3,346,452	+				-2.9
3,346,452	+				+0.5
3,346,452	+				+0.2
3,346,452	+				+1.2
3,346,452	+				+0.9
3,346,453	-				+0.2
3,346,453	-				+0.7
3,346,453	-				+1.1
3,346,540	+		IAI47_15855	0.11	-0.1
3,346,540	+		IAI47_15855	0.11	-0.2
3,346,540	+		IAI47_15855	0.11	+0.1
3,346,540	+		IAI47_15855	0.11	+0.5
3,346,540	+		IAI47_15855	0.11	-0.0
3,346,541	-		IAI47_15855	0.11	-0.2
3,346,541	-		IAI47_15855	0.11	+0.2
3,346,541	-		IAI47_15855	0.11	+1.8
3,346,722	+		IAI47_15855	0.24	-0.3
3,346,722	+		IAI47_15855	0.24	-0.8
3,346,723	-		IAI47_15855	0.24	-0.6
3,346,749	+		IAI47_15855	0.26	-0.3
3,346,770	+		IAI47_15855	0.27	-0.5
3,346,771	-		IAI47_15855	0.27	+1.6
3,346,771	-		IAI47_15855	0.27	+0.2