Strain Fitness in Pantoea sp. MT58 around IAI47_15450

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,251,466	+		IAI47_15445	0.68	-0.4
3,251,466	+		IAI47_15445	0.68	+0.4
3,251,466	+		IAI47_15445	0.68	+0.2
3,251,466	+		IAI47_15445	0.68	-0.5
3,251,466	+		IAI47_15445	0.68	+0.2
3,251,466	+		IAI47_15445	0.68	+1.7
3,251,467	-		IAI47_15445	0.68	-1.1
3,251,467	-		IAI47_15445	0.68	+1.0
3,251,467	-		IAI47_15445	0.68	-0.4
3,251,467	-		IAI47_15445	0.68	+0.2
3,251,467	-		IAI47_15445	0.68	+0.2
3,251,467	-		IAI47_15445	0.68	-0.6
3,251,467	-		IAI47_15445	0.68	-3.2
3,251,467	-		IAI47_15445	0.68	+0.7
3,251,467	-		IAI47_15445	0.68	+0.1
3,251,467	-		IAI47_15445	0.68	+0.4
3,251,514	+		IAI47_15445	0.70	-0.2
3,251,514	+		IAI47_15445	0.70	+1.2
3,251,514	+		IAI47_15445	0.70	+0.2
3,251,514	+		IAI47_15445	0.70	+0.4
3,251,514	+		IAI47_15445	0.70	+0.5
3,251,514	+		IAI47_15445	0.70	-1.2
3,251,515	-		IAI47_15445	0.70	+0.7
3,251,515	-		IAI47_15445	0.70	+0.5
3,251,515	-		IAI47_15445	0.70	-0.3
3,251,515	-		IAI47_15445	0.70	-0.3
3,251,515	-		IAI47_15445	0.70	+0.8
3,251,515	-		IAI47_15445	0.70	-0.2
3,251,515	-		IAI47_15445	0.70	+0.2
3,251,515	-		IAI47_15445	0.70	+1.2
3,251,545	+		IAI47_15445	0.72	+0.1
3,251,545	+		IAI47_15445	0.72	-1.8
3,251,545	+		IAI47_15445	0.72	-0.4
3,251,546	-		IAI47_15445	0.72	-0.0
3,251,546	-		IAI47_15445	0.72	+0.4
3,251,546	-		IAI47_15445	0.72	-1.9
3,251,546	-		IAI47_15445	0.72	+1.2
3,251,547	+		IAI47_15445	0.72	-1.6
3,251,547	+		IAI47_15445	0.72	-0.6
3,251,547	+		IAI47_15445	0.72	+0.5
3,251,547	+		IAI47_15445	0.72	+0.5
3,251,548	-		IAI47_15445	0.72	-1.1
3,251,548	-		IAI47_15445	0.72	-0.0
3,251,548	-		IAI47_15445	0.72	+0.2
3,251,548	-		IAI47_15445	0.72	+0.5
3,251,548	-		IAI47_15445	0.72	+1.0
3,251,548	-		IAI47_15445	0.72	+1.0
3,251,548	-		IAI47_15445	0.72	+0.1
3,251,548	-		IAI47_15445	0.72	-0.4
3,251,548	-		IAI47_15445	0.72	+0.4
3,251,548	-		IAI47_15445	0.72	-1.2
3,251,548	-		IAI47_15445	0.72	+2.0
3,251,617	+		IAI47_15445	0.75	-1.3
3,251,617	+		IAI47_15445	0.75	+0.7
3,251,618	-				+0.6
3,251,618	-		IAI47_15445	0.75	+1.2
3,251,632	+		IAI47_15445	0.76	+0.2
3,251,632	+		IAI47_15445	0.76	+0.2
3,251,653	-		IAI47_15445	0.77	-0.2
3,251,666	+		IAI47_15445	0.77	+0.4
3,251,699	-		IAI47_15445	0.79	-0.8
3,251,721	+		IAI47_15445	0.80	-1.5
3,251,721	+		IAI47_15445	0.80	-0.2
3,251,721	+		IAI47_15445	0.80	-0.2
3,251,721	+		IAI47_15445	0.80	-0.4
3,251,721	+		IAI47_15445	0.80	-1.1
3,251,722	-		IAI47_15445	0.80	-0.5
3,251,722	-		IAI47_15445	0.80	-0.6
3,251,722	-		IAI47_15445	0.80	+0.1
3,251,739	+		IAI47_15445	0.81	-2.5
3,251,739	+		IAI47_15445	0.81	-0.4
3,251,739	+		IAI47_15445	0.81	-0.1
3,251,740	-		IAI47_15445	0.81	+1.7
3,251,740	-		IAI47_15445	0.81	+1.7
3,251,740	-		IAI47_15445	0.81	+0.2
3,251,740	-		IAI47_15445	0.81	-0.9
3,251,740	-		IAI47_15445	0.81	-0.0
3,251,740	-		IAI47_15445	0.81	+1.9
3,251,740	-		IAI47_15445	0.81	-0.0
3,251,755	+		IAI47_15445	0.81	-0.3
3,251,755	+		IAI47_15445	0.81	-0.1
3,251,755	+		IAI47_15445	0.81	-0.5
3,251,770	+		IAI47_15445	0.82	+1.6
3,251,770	+		IAI47_15445	0.82	-0.1
3,251,771	-		IAI47_15445	0.82	-0.1
3,251,784	+		IAI47_15445	0.83	-0.5
3,251,785	-		IAI47_15445	0.83	+0.8
3,251,785	-		IAI47_15445	0.83	+0.5
3,251,785	-		IAI47_15445	0.83	-0.8
3,251,785	-		IAI47_15445	0.83	-0.5
3,251,785	-		IAI47_15445	0.83	+0.9
3,251,794	+		IAI47_15445	0.83	-0.8
3,251,794	+		IAI47_15445	0.83	-1.0
3,251,794	+		IAI47_15445	0.83	+0.6
3,251,796	+		IAI47_15445	0.83	-0.6
3,251,796	+		IAI47_15445	0.83	+0.6
3,251,796	+		IAI47_15445	0.83	-1.0
3,251,797	-		IAI47_15445	0.83	+1.2
3,251,797	-		IAI47_15445	0.83	+1.2
3,251,797	-		IAI47_15445	0.83	-0.2
3,251,797	-		IAI47_15445	0.83	-0.3
3,251,797	-		IAI47_15445	0.83	-2.0
3,251,797	-		IAI47_15445	0.83	+0.2
3,251,842	-		IAI47_15445	0.85	-0.5
3,251,842	-		IAI47_15445	0.85	-0.3
3,251,842	-		IAI47_15445	0.85	-0.4
3,251,908	+		IAI47_15445	0.88	-0.6
3,251,908	+		IAI47_15445	0.88	-0.1
3,251,909	-		IAI47_15445	0.88	+1.0
3,251,909	-		IAI47_15445	0.88	-2.6
3,251,909	-		IAI47_15445	0.88	+0.2
3,251,916	+		IAI47_15445	0.89	+1.2
3,251,916	+		IAI47_15445	0.89	-0.2
3,251,916	+		IAI47_15445	0.89	-1.1
3,251,916	+		IAI47_15445	0.89	+0.7
3,251,917	-		IAI47_15445	0.89	-0.1
3,251,917	-		IAI47_15445	0.89	+0.4
3,251,917	-		IAI47_15445	0.89	+0.0
3,251,917	-		IAI47_15445	0.89	+0.4
3,251,917	-		IAI47_15445	0.89	+0.5
3,251,917	-		IAI47_15445	0.89	-0.2
3,251,917	-		IAI47_15445	0.89	+1.0
3,251,917	-		IAI47_15445	0.89	+0.2
3,251,928	+		IAI47_15445	0.89	+0.5
3,251,928	+		IAI47_15445	0.89	-0.1
3,251,928	+		IAI47_15445	0.89	+1.3
3,251,928	+		IAI47_15445	0.89	-0.3
3,251,929	-		IAI47_15445	0.89	+0.8
3,251,944	+				-1.6
3,251,944	+				+1.8
3,251,945	-				-1.0
3,252,054	+				+1.8
3,252,055	-				+0.4
3,252,101	+				-0.6
3,252,115	+				+1.0
3,252,117	+				-0.1
3,252,118	-				+0.0
3,252,151	+				+1.0
3,252,151	+				+1.5
3,252,152	-				-0.1
3,252,195	+				+0.1
3,252,195	+				+1.5
3,252,195	+				-0.3
3,252,196	-				+1.2
3,252,218	+				-0.2
3,252,218	+				+0.9
3,252,218	+				-1.8
3,252,218	+				-0.9
3,252,218	+				-1.1
3,252,218	+				+1.2
3,252,218	+				+1.7
3,252,219	-				+1.0
3,252,219	-				+0.5
3,252,219	-				-0.5
3,252,219	-				-0.6
3,252,263	-				-0.8
3,252,271	-				+0.2
3,252,337	-				+0.2
3,252,337	-				+1.0
3,252,342	+				-0.6
3,252,342	+				+0.5
3,252,343	-				-1.6
3,252,343	-				+0.8
3,252,343	-				+1.8
3,252,343	-				+0.0