Strain Fitness in Pantoea sp. MT58 around IAI47_13835

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,927,723	+				-0.1
2,927,723	+				-0.5
2,927,724	-				+0.5
2,927,724	-				+1.3
2,927,724	-				+1.6
2,927,726	+				+0.3
2,927,732	+				-0.6
2,927,740	+				+0.6
2,927,765	+				+1.0
2,927,766	-				-0.3
2,927,766	-				-0.1
2,927,848	+		IAI47_13830	0.11	-0.6
2,927,848	+		IAI47_13830	0.11	-0.1
2,927,848	+		IAI47_13830	0.11	+0.4
2,927,848	+		IAI47_13830	0.11	-1.0
2,927,848	+		IAI47_13830	0.11	+0.3
2,927,849	-		IAI47_13830	0.12	-0.1
2,927,849	-		IAI47_13830	0.12	-0.3
2,927,849	-		IAI47_13830	0.12	+1.4
2,927,849	-		IAI47_13830	0.12	-1.3
2,927,849	-		IAI47_13830	0.12	-0.4
2,927,849	-		IAI47_13830	0.12	-1.7
2,927,866	+		IAI47_13830	0.14	+0.3
2,927,866	+		IAI47_13830	0.14	+2.8
2,927,903	-		IAI47_13830	0.20	-0.3
2,927,914	-		IAI47_13830	0.21	-1.5
2,927,960	-		IAI47_13830	0.28	+1.5
2,928,000	+		IAI47_13830	0.34	+0.9
2,928,000	+		IAI47_13830	0.34	+0.5
2,928,001	-		IAI47_13830	0.34	+0.0
2,928,001	-		IAI47_13830	0.34	+0.3
2,928,001	-		IAI47_13830	0.34	-0.5
2,928,001	-		IAI47_13830	0.34	+1.2
2,928,001	-		IAI47_13830	0.34	-0.0
2,928,001	-		IAI47_13830	0.34	+0.6
2,928,028	+		IAI47_13830	0.38	+0.7
2,928,028	+		IAI47_13830	0.38	+1.3
2,928,062	+		IAI47_13830	0.43	+1.3
2,928,062	+		IAI47_13830	0.43	+0.3
2,928,062	+		IAI47_13830	0.43	+1.8
2,928,063	-		IAI47_13830	0.43	+0.8
2,928,063	-		IAI47_13830	0.43	+0.9
2,928,063	-		IAI47_13830	0.43	-1.0
2,928,063	-		IAI47_13830	0.43	+0.8
2,928,127	+		IAI47_13830	0.53	+0.2
2,928,127	+		IAI47_13830	0.53	-1.3
2,928,168	+		IAI47_13830	0.59	+1.0
2,928,168	+		IAI47_13830	0.59	-1.7
2,928,168	+		IAI47_13830	0.59	+0.1
2,928,168	+		IAI47_13830	0.59	+0.8
2,928,169	-		IAI47_13830	0.59	-1.0
2,928,169	-		IAI47_13830	0.59	+1.7
2,928,169	-		IAI47_13830	0.59	-0.5
2,928,169	-		IAI47_13830	0.59	+0.1
2,928,169	-		IAI47_13830	0.59	-0.7
2,928,169	-		IAI47_13830	0.59	-1.7
2,928,169	-		IAI47_13830	0.59	+1.1
2,928,231	+		IAI47_13830	0.68	+0.6
2,928,232	-		IAI47_13830	0.68	+2.3
2,928,232	-		IAI47_13830	0.68	-0.9
2,928,338	+		IAI47_13830	0.84	+0.3
2,928,338	+		IAI47_13830	0.84	-1.3
2,928,338	+		IAI47_13830	0.84	+1.2
2,928,339	-		IAI47_13830	0.84	-0.2
2,928,339	-		IAI47_13830	0.84	+0.9
2,928,339	-		IAI47_13830	0.84	+0.5
2,928,350	+		IAI47_13830	0.86	+1.4
2,928,350	+		IAI47_13830	0.86	+1.0
2,928,350	+		IAI47_13830	0.86	-2.3
2,928,350	+		IAI47_13830	0.86	+1.7
2,928,350	+		IAI47_13830	0.86	+2.0
2,928,350	+		IAI47_13830	0.86	+2.3
2,928,350	+		IAI47_13830	0.86	-0.4
2,928,350	+		IAI47_13830	0.86	+0.9
2,928,350	+		IAI47_13830	0.86	+0.7
2,928,350	+		IAI47_13830	0.86	+0.6
2,928,350	+		IAI47_13830	0.86	+0.8
2,928,350	+		IAI47_13830	0.86	-0.7
2,928,350	+		IAI47_13830	0.86	+0.9
2,928,350	+		IAI47_13830	0.86	+0.5
2,928,350	+		IAI47_13830	0.86	-0.4
2,928,350	+		IAI47_13830	0.86	-0.5
2,928,350	+		IAI47_13830	0.86	-0.2
2,928,350	+		IAI47_13830	0.86	-0.1
2,928,350	+		IAI47_13830	0.86	-0.1
2,928,350	+		IAI47_13830	0.86	-0.3
2,928,350	+		IAI47_13830	0.86	+1.3
2,928,351	-		IAI47_13830	0.86	-1.8
2,928,351	-		IAI47_13830	0.86	+1.3
2,928,351	-		IAI47_13830	0.86	+0.1
2,928,351	-		IAI47_13830	0.86	+1.5
2,928,351	-		IAI47_13830	0.86	+0.5
2,928,351	-		IAI47_13830	0.86	+1.0
2,928,351	-		IAI47_13830	0.86	+0.3
2,928,351	-		IAI47_13830	0.86	-0.5
2,928,351	-		IAI47_13830	0.86	-0.4
2,928,351	-		IAI47_13830	0.86	-0.7
2,928,351	-		IAI47_13830	0.86	+0.8
2,928,351	-		IAI47_13830	0.86	+0.9
2,928,352	+		IAI47_13830	0.86	-0.3
2,928,352	+		IAI47_13830	0.86	-0.4
2,928,353	-		IAI47_13830	0.86	+0.7
2,928,355	-		IAI47_13830	0.87	-0.3
2,928,436	+				-0.2
2,928,436	+				+2.6
2,928,436	+				-1.3
2,928,436	+				+0.7
2,928,437	-				+0.1
2,928,437	-				+0.7
2,928,437	-				-0.2
2,928,437	-				-0.6
2,928,443	+				-1.2
2,928,656	+				-0.5
2,928,683	+				-0.7
2,928,683	+				+0.2
2,928,683	+				+0.1
2,928,684	-				+0.1
2,928,719	+				+0.4
2,928,719	+				-1.4
2,928,720	-				-0.3
2,930,383	-				+0.3
2,930,391	-				+0.3
2,930,470	-		IAI47_13840	0.15	+0.3
2,930,530	-		IAI47_13840	0.26	-2.3
2,930,530	-		IAI47_13840	0.26	-1.3
2,930,530	-		IAI47_13840	0.26	-0.5
2,930,530	-		IAI47_13840	0.26	-1.3
2,930,530	-		IAI47_13840	0.26	-0.1
2,930,533	-		IAI47_13840	0.26	-1.1
2,930,557	-		IAI47_13840	0.31	-1.7
2,930,557	-		IAI47_13840	0.31	-0.3
2,930,557	-		IAI47_13840	0.31	-1.1
2,930,640	-		IAI47_13840	0.46	-2.1
2,930,640	-		IAI47_13840	0.46	-1.1
2,930,656	-		IAI47_13840	0.49	-1.1
2,930,656	-		IAI47_13840	0.49	-2.1
2,930,662	-		IAI47_13840	0.50	-0.7
2,930,694	-		IAI47_13840	0.56	-0.7
2,930,884	-				-1.3
2,930,896	-				-2.5
2,930,896	-				+0.3
2,930,898	-				+1.6
2,930,898	-				+0.3
2,930,938	-				-0.7
2,930,938	-				-1.3
2,930,945	-				-0.1
2,930,994	-				+0.9
2,930,994	-				+1.6
2,930,994	-				-0.5
2,930,994	-				+0.3
2,930,995	+				-0.0
2,930,995	+				-0.2
2,930,995	+				+2.3
2,930,995	+				-1.1
2,930,995	+				+0.3
2,930,996	-				+1.6
2,930,996	-				-0.2
2,930,996	-				+1.4
2,930,996	-				-0.4
2,930,996	-				-0.6
2,931,026	+				+0.8
2,931,026	+				+1.3
2,931,027	-				-0.7
2,931,027	-				-1.7
2,931,027	-				+0.8
2,931,027	-				+0.8
2,931,038	+				-0.5
2,931,038	+				+0.3
2,931,039	-				+0.3
2,931,040	+				-0.6
2,931,041	-				-1.0
2,931,041	-				-0.2
2,931,041	-				+1.3
2,931,081	-				+0.4
2,931,098	+				+1.5
2,931,098	+				+1.3
2,931,098	+				-0.1
2,931,098	+				-0.4
2,931,098	+				-0.2
2,931,099	-				-1.3
2,931,099	-				+0.3
2,931,099	-				-0.1
2,931,099	-				+1.7
2,931,105	+				-1.1
2,931,105	+				+1.1
2,931,106	-				-1.0
2,931,106	-				+1.0
2,931,148	+				-1.5
2,931,148	+				+1.3
2,931,149	-				-0.0
2,931,149	-				+0.7
2,931,153	+				+1.8
2,931,153	+				+0.8
2,931,153	+				+0.2
2,931,153	+				+1.0
2,931,153	+				-0.5
2,931,154	-				+0.8
2,931,154	-				+0.1
2,931,154	-				+0.3
2,931,154	-				+0.5
2,931,154	-				-0.4
2,931,154	-				-1.3
2,931,154	-				+0.8
2,931,154	-				-0.2
2,931,154	-				-0.2
2,931,154	-				-0.1
2,931,154	-				-1.8
2,931,154	-				+0.5
2,931,154	-				+0.3
2,931,173	-				+1.4
2,931,173	-				-0.1
2,931,185	-				+0.7
2,931,248	-				-2.0
2,931,275	-		IAI47_13845	0.12	+1.3