Strain Fitness in Pantoea sp. MT58 around IAI47_13240

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,798,754	+		IAI47_13230	0.80	-0.5
2,798,754	+		IAI47_13230	0.80	+0.2
2,798,755	-		IAI47_13230	0.80	-0.3
2,798,755	-		IAI47_13230	0.80	+0.4
2,798,755	-		IAI47_13230	0.80	+0.4
2,798,769	+		IAI47_13230	0.82	+0.5
2,798,770	-		IAI47_13230	0.82	-0.8
2,798,770	-		IAI47_13230	0.82	+0.2
2,798,799	+		IAI47_13230	0.86	+1.2
2,798,799	+		IAI47_13230	0.86	+1.2
2,798,799	+		IAI47_13230	0.86	-0.3
2,798,799	+		IAI47_13230	0.86	+0.6
2,798,800	-		IAI47_13230	0.86	-0.7
2,798,800	-		IAI47_13230	0.86	+0.2
2,798,800	-		IAI47_13230	0.86	-0.2
2,798,868	+				+0.1
2,798,868	+				+1.1
2,798,868	+				-1.6
2,798,868	+				-0.6
2,798,868	+				-0.2
2,798,868	+				+0.5
2,798,868	+				+0.0
2,798,868	+				-0.0
2,798,869	-				+1.8
2,798,869	-				-0.1
2,798,869	-				-0.1
2,798,869	-				-0.2
2,798,869	-				+1.2
2,798,873	-				-0.5
2,798,938	+				+0.0
2,798,968	+				+0.2
2,798,969	-				+2.2
2,799,003	+		IAI47_13235	0.13	-0.3
2,799,003	+		IAI47_13235	0.13	-1.6
2,799,003	+		IAI47_13235	0.13	-0.9
2,799,003	+		IAI47_13235	0.13	+1.5
2,799,003	+		IAI47_13235	0.13	+0.6
2,799,004	-		IAI47_13235	0.13	+0.2
2,799,004	-		IAI47_13235	0.13	+0.3
2,799,004	-		IAI47_13235	0.13	+1.6
2,799,004	-		IAI47_13235	0.13	-0.2
2,799,004	-		IAI47_13235	0.13	-0.4
2,799,004	-		IAI47_13235	0.13	+0.1
2,799,004	-		IAI47_13235	0.13	+1.2
2,799,036	+		IAI47_13235	0.18	+0.2
2,799,036	+		IAI47_13235	0.18	+0.2
2,799,036	+		IAI47_13235	0.18	+0.9
2,799,036	+		IAI47_13235	0.18	+0.6
2,799,037	-		IAI47_13235	0.18	-1.8
2,799,037	-		IAI47_13235	0.18	+0.2
2,799,037	-		IAI47_13235	0.18	-0.1
2,799,037	-		IAI47_13235	0.18	-0.8
2,799,037	-		IAI47_13235	0.18	+0.2
2,799,037	-		IAI47_13235	0.18	+0.7
2,799,037	-		IAI47_13235	0.18	+0.7
2,799,037	-		IAI47_13235	0.18	-0.3
2,799,075	+		IAI47_13235	0.23	-0.1
2,799,075	+		IAI47_13235	0.23	-2.3
2,799,075	+		IAI47_13235	0.23	+0.1
2,799,075	+		IAI47_13235	0.23	+1.8
2,799,076	-		IAI47_13235	0.23	+0.2
2,799,079	+		IAI47_13235	0.23	+0.4
2,799,079	+		IAI47_13235	0.23	-0.7
2,799,079	+		IAI47_13235	0.23	+0.6
2,799,079	+		IAI47_13235	0.23	-0.2
2,799,080	-		IAI47_13235	0.23	+0.2
2,799,080	-		IAI47_13235	0.23	-0.4
2,799,178	-		IAI47_13235	0.37	-1.3
2,799,192	+		IAI47_13235	0.39	+0.1
2,799,318	+		IAI47_13235	0.56	+1.6
2,799,319	-		IAI47_13235	0.56	+0.1
2,799,359	-		IAI47_13235	0.61	+0.6
2,799,359	-		IAI47_13235	0.61	+0.6
2,799,423	+		IAI47_13235	0.70	+0.4
2,799,424	-		IAI47_13235	0.70	+0.2
2,799,426	+		IAI47_13235	0.70	-0.5
2,799,426	+		IAI47_13235	0.70	+0.2
2,799,427	-		IAI47_13235	0.70	+1.7
2,799,427	-		IAI47_13235	0.70	-0.8
2,799,477	+		IAI47_13235	0.77	+0.8
2,799,477	+		IAI47_13235	0.77	-0.6
2,799,478	-		IAI47_13235	0.77	-1.3
2,799,572	-		IAI47_13235	0.90	-0.3
2,799,626	-				+1.4
2,799,646	+				-0.8
2,799,646	+				+0.5
2,799,646	+				-0.2
2,799,647	-				-0.8
2,799,647	-				-0.9
2,799,657	-				-0.1
2,799,657	-				+1.6
2,799,657	-				-2.9
2,799,657	-				-0.8
2,799,657	-				+0.2
2,799,657	-				-1.1
2,799,749	+		IAI47_13240	0.13	+0.0
2,799,749	+		IAI47_13240	0.13	-0.4
2,799,750	-		IAI47_13240	0.13	+0.8
2,799,750	-		IAI47_13240	0.13	-0.6
2,799,750	-		IAI47_13240	0.13	-0.9
2,799,770	+		IAI47_13240	0.16	+0.6
2,799,771	-		IAI47_13240	0.16	-1.2
2,799,782	+		IAI47_13240	0.18	+1.2
2,799,782	+		IAI47_13240	0.18	-0.8
2,799,782	+		IAI47_13240	0.18	+0.7
2,799,783	-		IAI47_13240	0.18	+0.2
2,799,783	-		IAI47_13240	0.18	+0.1
2,799,783	-		IAI47_13240	0.18	+0.1
2,799,783	-		IAI47_13240	0.18	+0.2
2,799,792	+		IAI47_13240	0.19	-0.5
2,799,792	+		IAI47_13240	0.19	-1.8
2,799,885	+		IAI47_13240	0.32	-1.2
2,799,886	-		IAI47_13240	0.32	+0.8
2,799,930	+		IAI47_13240	0.38	+0.5
2,799,930	+		IAI47_13240	0.38	-0.8
2,799,930	+		IAI47_13240	0.38	+1.2
2,799,930	+		IAI47_13240	0.38	+0.5
2,799,931	-		IAI47_13240	0.38	-0.4
2,799,931	-		IAI47_13240	0.38	-1.1
2,799,931	-		IAI47_13240	0.38	-1.1
2,799,931	-		IAI47_13240	0.38	-1.1
2,800,016	+		IAI47_13240	0.50	+1.2
2,800,017	-		IAI47_13240	0.50	-0.5
2,800,017	-		IAI47_13240	0.50	-0.0
2,800,032	-		IAI47_13240	0.52	-0.3
2,800,032	-		IAI47_13240	0.52	+0.8
2,800,044	+		IAI47_13240	0.54	+0.6
2,800,044	+		IAI47_13240	0.54	+0.7
2,800,045	-		IAI47_13240	0.54	+1.2
2,800,045	-		IAI47_13240	0.54	-0.2
2,800,089	+		IAI47_13240	0.60	-1.3
2,800,090	-		IAI47_13240	0.60	-0.8
2,800,148	+		IAI47_13240	0.68	+1.0
2,800,148	+		IAI47_13240	0.68	-0.2
2,800,149	-		IAI47_13240	0.69	-0.6
2,800,149	-		IAI47_13240	0.69	-1.8
2,800,157	+		IAI47_13240	0.70	+3.0
2,800,158	-		IAI47_13240	0.70	-0.8
2,800,158	-		IAI47_13240	0.70	-0.8
2,800,158	-		IAI47_13240	0.70	-0.3
2,800,158	-		IAI47_13240	0.70	+0.5
2,800,199	+		IAI47_13240	0.76	+0.1
2,800,219	+		IAI47_13240	0.78	+2.6
2,800,220	-		IAI47_13240	0.78	+0.7
2,800,369	+				-1.1
2,800,369	+				-1.3
2,800,369	+				-0.0
2,800,369	+				-1.3
2,800,370	-				+0.2
2,800,370	-				+0.2
2,800,379	+				-0.2
2,800,379	+				+0.1
2,800,380	-				-0.5
2,800,380	-				-1.8
2,800,380	-				+0.3
2,800,380	-				+0.9
2,800,380	-				+0.2
2,800,504	+		IAI47_13245	0.14	+0.0
2,800,504	+		IAI47_13245	0.14	-0.5
2,800,504	+		IAI47_13245	0.14	-0.3
2,800,504	+		IAI47_13245	0.14	-0.3
2,800,504	+		IAI47_13245	0.14	+2.0
2,800,505	-		IAI47_13245	0.14	+0.7
2,800,505	-		IAI47_13245	0.14	-0.8
2,800,505	-		IAI47_13245	0.14	-0.3
2,800,676	+		IAI47_13245	0.34	+1.2
2,800,676	+		IAI47_13245	0.34	+0.1
2,800,676	+		IAI47_13245	0.34	+0.2
2,800,676	+		IAI47_13245	0.34	-0.4
2,800,676	+		IAI47_13245	0.34	+0.2
2,800,677	-		IAI47_13245	0.34	+1.4
2,800,677	-		IAI47_13245	0.34	+0.2
2,800,706	+		IAI47_13245	0.38	+1.2
2,800,706	+		IAI47_13245	0.38	-0.8
2,800,706	+		IAI47_13245	0.38	+0.2
2,800,707	-		IAI47_13245	0.38	+0.2
2,800,717	-		IAI47_13245	0.39	-0.1
2,800,725	+		IAI47_13245	0.40	+1.1
2,800,727	+		IAI47_13245	0.40	+0.8
2,800,727	+		IAI47_13245	0.40	+0.7
2,800,728	-		IAI47_13245	0.40	+0.8
2,800,728	-		IAI47_13245	0.40	+0.2
2,800,728	-		IAI47_13245	0.40	-0.0
2,800,728	-		IAI47_13245	0.40	+0.2
2,800,747	-		IAI47_13245	0.42	-0.8
2,800,861	+		IAI47_13245	0.56	-0.5
2,800,861	+		IAI47_13245	0.56	+0.7
2,800,861	+		IAI47_13245	0.56	-0.4
2,800,862	-		IAI47_13245	0.56	-2.1
2,800,869	+		IAI47_13245	0.57	+0.0
2,800,869	+		IAI47_13245	0.57	-0.2
2,800,893	-		IAI47_13245	0.60	+0.5
2,800,961	+		IAI47_13245	0.68	-0.3
2,800,961	+		IAI47_13245	0.68	-0.1
2,800,962	-		IAI47_13245	0.68	+1.2
2,801,111	+		IAI47_13245	0.85	-0.3
2,801,112	-		IAI47_13245	0.85	+1.2
2,801,112	-		IAI47_13245	0.85	-1.3
2,801,112	-		IAI47_13245	0.85	+0.1
2,801,112	-		IAI47_13245	0.85	+0.2
2,801,112	-		IAI47_13245	0.85	-0.2
2,801,151	+				-1.0
2,801,152	-				-0.3
2,801,196	+				-1.5
2,801,196	+				+0.5
2,801,196	+				-0.5
2,801,196	+				+0.4
2,801,196	+				+0.4
2,801,197	-				+1.1
2,801,197	-				-1.6
2,801,197	-				+1.2
2,801,197	-				+0.5
2,801,197	-				+3.2
2,801,199	+				+0.1
2,801,199	+				+0.2
2,801,199	+				+0.6
2,801,199	+				+0.2
2,801,199	+				-1.1
2,801,200	-				-0.1
2,801,200	-				+0.0
2,801,200	-				+0.4
2,801,200	-				-0.9
2,801,200	-				-0.6
2,801,200	-				-0.0
2,801,200	-				+0.4
2,801,200	-				-1.3
2,801,200	-				-0.5
2,801,200	-				+0.5
2,801,206	+				+0.8
2,801,206	+				-0.1
2,801,207	-				+0.4
2,801,207	-				-0.6
2,801,235	+				-0.0
2,801,235	+				-0.5
2,801,235	+				-0.0
2,801,235	+				+0.4
2,801,236	-				+1.1
2,801,236	-				+0.5
2,801,251	+				+0.7
2,801,286	+				+0.8
2,801,286	+				-0.3
2,801,304	-				+0.2