Strain Fitness in Pantoea sp. MT58 around IAI47_13175

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,786,474	-		IAI47_13170	0.32	-0.2
2,786,484	+		IAI47_13170	0.33	-0.5
2,786,485	-		IAI47_13170	0.33	+0.1
2,786,485	-		IAI47_13170	0.33	+0.2
2,786,485	-		IAI47_13170	0.33	+1.5
2,786,503	+		IAI47_13170	0.34	-0.7
2,786,504	-		IAI47_13170	0.35	+0.8
2,786,505	+		IAI47_13170	0.35	+0.5
2,786,505	+		IAI47_13170	0.35	+1.0
2,786,505	+		IAI47_13170	0.35	-0.1
2,786,506	-		IAI47_13170	0.35	+0.7
2,786,506	-		IAI47_13170	0.35	-0.8
2,786,506	-		IAI47_13170	0.35	-0.3
2,786,506	-		IAI47_13170	0.35	+0.2
2,786,506	-		IAI47_13170	0.35	+0.0
2,786,506	-		IAI47_13170	0.35	+0.0
2,786,506	-		IAI47_13170	0.35	+1.8
2,786,515	+		IAI47_13170	0.36	+1.0
2,786,515	+		IAI47_13170	0.36	-0.9
2,786,515	+		IAI47_13170	0.36	+0.2
2,786,516	-		IAI47_13170	0.36	-0.5
2,786,527	+		IAI47_13170	0.37	-1.1
2,786,528	-		IAI47_13170	0.37	-0.5
2,786,531	+		IAI47_13170	0.37	+1.0
2,786,531	+		IAI47_13170	0.37	+0.8
2,786,531	+		IAI47_13170	0.37	-1.1
2,786,531	+		IAI47_13170	0.37	-0.8
2,786,531	+		IAI47_13170	0.37	+0.2
2,786,531	+		IAI47_13170	0.37	+1.3
2,786,531	+		IAI47_13170	0.37	+1.5
2,786,531	+		IAI47_13170	0.37	+0.3
2,786,532	-		IAI47_13170	0.37	+0.1
2,786,532	-		IAI47_13170	0.37	+0.1
2,786,532	-		IAI47_13170	0.37	-0.8
2,786,532	-		IAI47_13170	0.37	+0.1
2,786,532	-		IAI47_13170	0.37	-0.5
2,786,532	-		IAI47_13170	0.37	-1.4
2,786,645	+		IAI47_13170	0.47	+0.4
2,786,646	-		IAI47_13170	0.47	+0.4
2,786,646	-		IAI47_13170	0.47	-0.5
2,786,646	-		IAI47_13170	0.47	-0.3
2,786,666	+		IAI47_13170	0.49	-1.8
2,786,666	+		IAI47_13170	0.49	+0.2
2,786,666	+		IAI47_13170	0.49	+0.5
2,786,667	-		IAI47_13170	0.49	-0.8
2,786,690	-		IAI47_13170	0.51	+0.8
2,786,692	+		IAI47_13170	0.51	-0.7
2,786,692	+		IAI47_13170	0.51	-1.0
2,786,693	-		IAI47_13170	0.51	+0.5
2,786,693	-		IAI47_13170	0.51	-0.0
2,786,693	-		IAI47_13170	0.51	-0.8
2,786,693	-		IAI47_13170	0.51	+0.5
2,786,693	-		IAI47_13170	0.51	-0.0
2,786,693	-		IAI47_13170	0.51	-0.7
2,786,736	+		IAI47_13170	0.55	-0.2
2,786,758	+		IAI47_13170	0.57	-0.8
2,786,758	+		IAI47_13170	0.57	-0.6
2,786,758	+		IAI47_13170	0.57	-0.3
2,786,812	-		IAI47_13170	0.61	-0.8
2,786,816	+		IAI47_13170	0.62	+1.2
2,786,816	+		IAI47_13170	0.62	-0.8
2,786,817	-		IAI47_13170	0.62	+0.8
2,786,817	-		IAI47_13170	0.62	+0.2
2,786,817	-		IAI47_13170	0.62	-0.5
2,786,959	+		IAI47_13170	0.74	-0.5
2,786,959	+		IAI47_13170	0.74	-1.1
2,786,959	+		IAI47_13170	0.74	-0.5
2,786,999	-		IAI47_13170	0.78	+0.2
2,786,999	-		IAI47_13170	0.78	-1.2
2,787,007	+		IAI47_13170	0.78	-1.1
2,787,007	+		IAI47_13170	0.78	+0.2
2,787,007	+		IAI47_13170	0.78	-0.0
2,787,007	+		IAI47_13170	0.78	-0.5
2,787,007	+		IAI47_13170	0.78	+1.0
2,787,007	+		IAI47_13170	0.78	+0.2
2,787,007	+		IAI47_13170	0.78	+1.1
2,787,008	-		IAI47_13170	0.79	+0.7
2,787,008	-		IAI47_13170	0.79	-0.5
2,787,008	-		IAI47_13170	0.79	-0.6
2,787,008	-		IAI47_13170	0.79	-0.4
2,787,010	+		IAI47_13170	0.79	+0.3
2,787,010	+		IAI47_13170	0.79	+0.6
2,787,010	+		IAI47_13170	0.79	+1.8
2,787,052	+		IAI47_13170	0.82	-0.7
2,787,052	+		IAI47_13170	0.82	+0.2
2,787,053	-		IAI47_13170	0.82	-0.6
2,787,053	-		IAI47_13170	0.82	-0.0
2,787,061	+		IAI47_13170	0.83	-1.4
2,787,062	-		IAI47_13170	0.83	+1.5
2,787,065	+		IAI47_13170	0.84	-0.1
2,787,094	+		IAI47_13170	0.86	-0.5
2,787,094	+		IAI47_13170	0.86	-0.8
2,787,094	+		IAI47_13170	0.86	+0.6
2,787,095	-		IAI47_13170	0.86	-0.9
2,787,095	-		IAI47_13170	0.86	-0.8
2,787,118	+		IAI47_13170	0.88	-0.2
2,787,119	-		IAI47_13170	0.88	-1.4
2,787,145	+				-0.1
2,787,253	+				-0.3
2,787,253	+				-0.5
2,787,253	+				+1.2
2,787,253	+				-1.2
2,787,254	-				-0.4
2,787,254	-				+0.6
2,787,254	-				-0.4
2,787,254	-				-0.4
2,787,254	-				-0.3
2,787,254	-				-0.8
2,787,290	+				-1.0
2,787,290	+				+0.5
2,787,290	+				-0.1
2,787,308	+				+0.2
2,787,308	+				+0.2
2,787,308	+				-0.6
2,787,308	+				+2.4
2,787,308	+				-0.8
2,787,308	+				+0.2
2,787,308	+				-0.5
2,787,308	+				+0.5
2,787,308	+				+0.1
2,787,308	+				-1.0
2,787,308	+				-0.6
2,787,309	-				-0.0
2,787,309	-				-1.4
2,787,309	-				-1.2
2,787,309	-				-0.8
2,787,309	-				+0.1
2,787,309	-				+0.2
2,787,309	-				-0.3
2,787,309	-				-0.2
2,787,309	-				+0.6
2,787,386	-				-0.5
2,787,386	-				+0.0
2,787,395	+				-0.9
2,787,396	-				+0.4
2,787,405	-				-0.8
2,787,405	-				-0.2
2,787,487	+				+0.4
2,787,487	+				+0.1
2,787,488	-				-0.3
2,787,508	-				+0.1
2,787,508	-				+0.2
2,787,525	+		IAI47_13175	0.11	-1.0
2,787,525	+		IAI47_13175	0.11	-1.8
2,787,634	+		IAI47_13175	0.21	+0.6
2,787,634	+		IAI47_13175	0.21	+1.0
2,787,634	+		IAI47_13175	0.21	+0.6
2,787,635	-		IAI47_13175	0.21	-0.5
2,787,635	-		IAI47_13175	0.21	+0.8
2,787,635	-		IAI47_13175	0.21	+2.6
2,787,665	+		IAI47_13175	0.24	+1.2
2,787,665	+		IAI47_13175	0.24	-0.8
2,787,665	+		IAI47_13175	0.24	-0.9
2,787,665	+		IAI47_13175	0.24	+1.6
2,787,665	+		IAI47_13175	0.24	-1.8
2,787,747	+		IAI47_13175	0.31	-0.2
2,787,747	+		IAI47_13175	0.31	-0.0
2,787,747	+		IAI47_13175	0.31	-1.1
2,787,748	-		IAI47_13175	0.31	-0.4
2,787,748	-		IAI47_13175	0.31	-0.4
2,787,748	-		IAI47_13175	0.31	+0.4
2,787,760	-		IAI47_13175	0.32	-0.4
2,787,786	+		IAI47_13175	0.35	+0.2
2,787,787	-		IAI47_13175	0.35	-2.1
2,787,787	-		IAI47_13175	0.35	+0.9
2,787,787	-		IAI47_13175	0.35	+1.0
2,787,811	+		IAI47_13175	0.37	-0.0
2,787,811	+		IAI47_13175	0.37	-0.4
2,787,812	-		IAI47_13175	0.37	-0.4
2,787,812	-		IAI47_13175	0.37	-1.6
2,787,812	-		IAI47_13175	0.37	-0.4
2,787,817	-		IAI47_13175	0.37	+0.2
2,787,817	-		IAI47_13175	0.37	-1.1
2,787,841	+		IAI47_13175	0.39	-0.1
2,787,842	-		IAI47_13175	0.40	-0.6
2,787,887	+		IAI47_13175	0.44	+1.0
2,787,887	+		IAI47_13175	0.44	-0.7
2,787,887	+		IAI47_13175	0.44	+0.2
2,787,887	+		IAI47_13175	0.44	-0.1
2,787,888	-		IAI47_13175	0.44	+0.4
2,787,888	-		IAI47_13175	0.44	+0.0
2,787,888	-		IAI47_13175	0.44	-1.7
2,787,888	-		IAI47_13175	0.44	+0.7
2,787,888	-		IAI47_13175	0.44	+1.2
2,787,888	-		IAI47_13175	0.44	-0.3
2,787,889	+		IAI47_13175	0.44	+0.5
2,787,889	+		IAI47_13175	0.44	+1.2
2,787,890	-		IAI47_13175	0.44	+1.2
2,787,890	-		IAI47_13175	0.44	+0.3
2,787,890	-		IAI47_13175	0.44	+0.2
2,787,906	+		IAI47_13175	0.45	+0.8
2,787,951	+		IAI47_13175	0.49	-0.9
2,787,976	-		IAI47_13175	0.52	-0.0
2,787,976	-		IAI47_13175	0.52	-1.4
2,787,976	-		IAI47_13175	0.52	+1.8
2,788,048	-		IAI47_13175	0.58	+0.3
2,788,158	+		IAI47_13175	0.68	+1.0
2,788,159	-		IAI47_13175	0.68	+1.2
2,788,162	+		IAI47_13175	0.68	-0.3
2,788,162	+		IAI47_13175	0.68	+0.7
2,788,162	+		IAI47_13175	0.68	+0.6
2,788,162	+		IAI47_13175	0.68	+0.8
2,788,163	-		IAI47_13175	0.68	+0.7
2,788,163	-		IAI47_13175	0.68	+0.7
2,788,163	-		IAI47_13175	0.68	+1.8
2,788,163	-		IAI47_13175	0.68	-0.8
2,788,163	-		IAI47_13175	0.68	+1.8
2,788,163	-		IAI47_13175	0.68	+0.6
2,788,163	-		IAI47_13175	0.68	+1.2
2,788,163	-		IAI47_13175	0.68	+0.9
2,788,163	-		IAI47_13175	0.68	+1.6
2,788,186	+		IAI47_13175	0.71	+0.8
2,788,186	+		IAI47_13175	0.71	+0.0
2,788,186	+		IAI47_13175	0.71	-0.7
2,788,187	-		IAI47_13175	0.71	-0.1
2,788,206	+		IAI47_13175	0.72	+0.2
2,788,206	+		IAI47_13175	0.72	-0.6
2,788,207	-		IAI47_13175	0.72	+1.0
2,788,207	-		IAI47_13175	0.72	-0.3
2,788,228	+		IAI47_13175	0.74	+1.5
2,788,228	+		IAI47_13175	0.74	+0.9
2,788,229	-		IAI47_13175	0.74	-0.5
2,788,229	-		IAI47_13175	0.74	-0.4
2,788,258	+		IAI47_13175	0.77	+1.0
2,788,263	+		IAI47_13175	0.77	+1.8
2,788,263	+		IAI47_13175	0.77	-1.2
2,788,263	+		IAI47_13175	0.77	+1.8
2,788,263	+		IAI47_13175	0.77	-0.2
2,788,263	+		IAI47_13175	0.77	-1.9
2,788,263	+		IAI47_13175	0.77	+0.1
2,788,263	+		IAI47_13175	0.77	-0.5
2,788,263	+		IAI47_13175	0.77	-0.4
2,788,263	+		IAI47_13175	0.77	-0.1
2,788,263	+		IAI47_13175	0.77	+0.6
2,788,264	-		IAI47_13175	0.78	-0.5
2,788,264	-		IAI47_13175	0.78	-2.1
2,788,264	-		IAI47_13175	0.78	+0.4
2,788,264	-		IAI47_13175	0.78	-0.8
2,788,264	-		IAI47_13175	0.78	+0.5
2,788,264	-		IAI47_13175	0.78	+0.8
2,788,264	-		IAI47_13175	0.78	-0.4
2,788,264	-		IAI47_13175	0.78	+0.4
2,788,264	-		IAI47_13175	0.78	+0.5
2,788,264	-		IAI47_13175	0.78	-1.3
2,788,264	-		IAI47_13175	0.78	-0.4
2,788,264	-		IAI47_13175	0.78	-0.5
2,788,264	-		IAI47_13175	0.78	+0.9
2,788,264	-		IAI47_13175	0.78	-0.8
2,788,264	-		IAI47_13175	0.78	+1.2
2,788,264	-		IAI47_13175	0.78	-1.4
2,788,264	-		IAI47_13175	0.78	-0.4
2,788,329	-		IAI47_13175	0.83	+1.4
2,788,380	+		IAI47_13175	0.88	-0.3
2,788,381	-		IAI47_13175	0.88	-0.4
2,788,387	-		IAI47_13175	0.89	+0.3
2,788,387	-		IAI47_13175	0.89	-0.0
2,788,396	+		IAI47_13175	0.89	+0.2
2,788,447	+				+0.4
2,788,447	+				-0.6
2,788,447	+				+0.5
2,788,448	-				+0.9
2,788,448	-				+1.0
2,788,448	-				-0.4
2,788,448	-				+0.6
2,788,448	-				+0.1
2,788,448	-				+1.4
2,788,462	+				+0.2
2,788,462	+				+0.2
2,788,463	-				-0.8
2,788,466	-				+0.0
2,788,466	-				+0.2
2,788,466	-				+1.2
2,788,466	-				-1.1
2,788,521	+				+1.4
2,788,528	+				+0.2
2,788,529	-				-0.9
2,788,557	-				+1.5
2,788,557	-				-0.5
2,788,557	-				+0.8
2,788,557	-				+1.2
2,788,557	-				-0.8
2,788,560	+				-2.1
2,788,560	+				-3.1
2,788,560	+				-2.6
2,788,560	+				-3.9
2,788,560	+				-3.6
2,788,561	-				-0.8
2,788,561	-				-1.4
2,788,561	-				-3.1
2,788,561	-				-1.8
2,788,595	+		IAI47_13180	0.14	-2.6
2,788,595	+		IAI47_13180	0.14	-3.5
2,788,595	+		IAI47_13180	0.14	-1.8
2,788,595	+		IAI47_13180	0.14	-1.8
2,788,596	-		IAI47_13180	0.14	-2.1
2,788,596	-		IAI47_13180	0.14	-3.5
2,788,596	-		IAI47_13180	0.14	-3.7
2,788,661	+		IAI47_13180	0.28	-2.8
2,788,661	+		IAI47_13180	0.28	-5.8
2,788,661	+		IAI47_13180	0.28	-2.6
2,788,661	+		IAI47_13180	0.28	-2.4
2,788,662	-		IAI47_13180	0.28	-2.8
2,788,662	-		IAI47_13180	0.28	-2.4
2,788,662	-		IAI47_13180	0.28	-4.2
2,788,776	-		IAI47_13180	0.53	-3.6
2,788,776	-		IAI47_13180	0.53	-3.9
2,788,870	+		IAI47_13180	0.73	-2.8
2,788,871	-		IAI47_13180	0.74	-2.1
2,788,871	-		IAI47_13180	0.74	-2.6
2,788,881	+		IAI47_13180	0.76	-3.2
2,788,882	-		IAI47_13180	0.76	-3.1
2,788,937	+		IAI47_13180	0.88	-3.2
2,788,937	+		IAI47_13180	0.88	-2.4
2,788,937	+		IAI47_13180	0.88	-2.4
2,788,937	+		IAI47_13180	0.88	-3.8
2,788,938	-		IAI47_13180	0.88	-3.5
2,788,938	-		IAI47_13180	0.88	-2.4
2,788,938	-		IAI47_13180	0.88	-2.4
2,788,938	-		IAI47_13180	0.88	-2.1
2,788,938	-		IAI47_13180	0.88	-3.1
2,788,976	+				-0.8
2,788,977	-				-4.6
2,789,005	+				-2.1
2,789,005	+				-1.4
2,789,005	+				-3.1
2,789,006	-				-2.4
2,789,008	+				-3.8
2,789,008	+				-2.8
2,789,009	-				-1.2
2,789,009	-				-1.1
2,789,039	+				-2.4
2,789,039	+				-2.8
2,789,039	+				-2.1
2,789,054	+				-0.8
2,789,054	+				-2.1
2,789,054	+				-2.8
2,789,055	-				-1.0
2,789,055	-				-0.1
2,789,091	-				+1.2
2,789,107	+				+0.2
2,789,109	+				+0.2
2,789,110	-				-1.9
2,789,110	-				-0.0
2,789,110	-				+1.8
2,789,119	+				-1.4
2,789,119	+				-0.8
2,789,119	+				+0.2
2,789,120	-				-0.2
2,789,131	+				+0.2
2,789,136	+				+0.1
2,789,136	+				+0.6
2,789,136	+				+0.1
2,789,237	+				+1.8
2,789,237	+				+1.2
2,789,238	-				-0.6
2,789,243	+				-1.0
2,789,243	+				-0.1
2,789,243	+				+0.2
2,789,244	-				-0.4
2,789,266	+				+0.8
2,789,266	+				-0.0
2,789,390	+				+1.1
2,789,391	-				-0.8
2,789,420	+				-0.5
2,789,420	+				+0.3
2,789,420	+				+0.3
2,789,421	-				-1.8
2,789,421	-				+0.2
2,789,433	+				-0.6
2,789,512	+				+1.2