Strain Fitness in Pantoea sp. MT58 around IAI47_11790

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,500,450	+		IAI47_11785	0.36	+0.8
2,500,450	+		IAI47_11785	0.36	-0.3
2,500,504	-		IAI47_11785	0.40	-0.8
2,500,602	+		IAI47_11785	0.47	-0.3
2,500,602	+		IAI47_11785	0.47	+1.2
2,500,602	+		IAI47_11785	0.47	-0.3
2,500,602	+		IAI47_11785	0.47	-0.4
2,500,602	+		IAI47_11785	0.47	+1.2
2,500,603	-		IAI47_11785	0.47	+0.2
2,500,603	-		IAI47_11785	0.47	+1.6
2,500,603	-		IAI47_11785	0.47	+0.9
2,500,603	-		IAI47_11785	0.47	-0.6
2,500,603	-		IAI47_11785	0.47	-0.2
2,500,603	-		IAI47_11785	0.47	+1.3
2,500,603	-		IAI47_11785	0.47	+0.7
2,500,603	-		IAI47_11785	0.47	+3.4
2,500,603	-		IAI47_11785	0.47	+1.1
2,500,603	-		IAI47_11785	0.47	+1.5
2,500,603	-		IAI47_11785	0.47	-0.2
2,500,603	-		IAI47_11785	0.47	+0.2
2,500,670	-		IAI47_11785	0.51	-0.2
2,500,687	+		IAI47_11785	0.52	-0.7
2,500,687	+		IAI47_11785	0.52	-1.8
2,500,687	+		IAI47_11785	0.52	-0.5
2,500,688	-		IAI47_11785	0.52	+0.5
2,500,688	-		IAI47_11785	0.52	-0.2
2,500,715	+		IAI47_11785	0.54	+1.6
2,500,715	+		IAI47_11785	0.54	-0.2
2,500,716	-		IAI47_11785	0.54	+1.2
2,500,827	+		IAI47_11785	0.62	-0.8
2,500,827	+		IAI47_11785	0.62	-1.4
2,500,827	+		IAI47_11785	0.62	-0.2
2,500,827	+		IAI47_11785	0.62	+3.2
2,500,827	+		IAI47_11785	0.62	-0.5
2,500,827	+		IAI47_11785	0.62	-0.3
2,500,828	-		IAI47_11785	0.62	+1.0
2,500,828	-		IAI47_11785	0.62	+0.6
2,500,978	+		IAI47_11785	0.72	-0.5
2,501,161	+		IAI47_11785	0.84	+0.2
2,501,161	+		IAI47_11785	0.84	+1.2
2,501,161	+		IAI47_11785	0.84	+0.9
2,501,161	+		IAI47_11785	0.84	-0.6
2,501,162	-		IAI47_11785	0.84	-0.0
2,501,162	-		IAI47_11785	0.84	+0.3
2,501,162	-		IAI47_11785	0.84	-0.1
2,501,228	+		IAI47_11785	0.89	-0.1
2,501,228	+		IAI47_11785	0.89	+0.1
2,501,229	-		IAI47_11785	0.89	-0.4
2,501,292	-				-0.8
2,501,399	+				-1.3
2,501,399	+				-0.2
2,501,399	+				+0.6
2,501,400	-				-2.6
2,501,400	-				-1.2
2,501,400	-				-0.9
2,501,496	-		IAI47_11790	0.10	+0.5
2,501,496	-		IAI47_11790	0.10	-0.2
2,501,607	+		IAI47_11790	0.22	+0.5
2,501,652	+		IAI47_11790	0.27	-1.0
2,501,816	+		IAI47_11790	0.44	+0.2
2,501,862	+		IAI47_11790	0.49	+0.5
2,501,864	+		IAI47_11790	0.49	+1.2
2,501,864	+		IAI47_11790	0.49	+0.4
2,501,864	+		IAI47_11790	0.49	+0.2
2,501,864	+		IAI47_11790	0.49	+0.2
2,501,864	+		IAI47_11790	0.49	-0.1
2,501,864	+		IAI47_11790	0.49	+0.2
2,501,864	+		IAI47_11790	0.49	-1.4
2,501,865	-		IAI47_11790	0.49	+0.8
2,501,865	-		IAI47_11790	0.49	-0.6
2,501,865	-		IAI47_11790	0.49	-1.5
2,501,865	-		IAI47_11790	0.49	-0.2
2,501,865	-		IAI47_11790	0.49	-0.3
2,501,891	+		IAI47_11790	0.52	-0.2
2,501,892	-		IAI47_11790	0.52	+0.2
2,501,892	-		IAI47_11790	0.52	+0.6
2,501,892	-		IAI47_11790	0.52	+0.9
2,501,933	+		IAI47_11790	0.57	-0.4
2,501,933	+		IAI47_11790	0.57	+0.3
2,501,933	+		IAI47_11790	0.57	+1.1
2,501,933	+		IAI47_11790	0.57	-1.2
2,501,933	+		IAI47_11790	0.57	-0.2
2,501,933	+		IAI47_11790	0.57	+0.0
2,501,933	+		IAI47_11790	0.57	-0.3
2,501,933	+		IAI47_11790	0.57	+0.2
2,501,933	+		IAI47_11790	0.57	+0.2
2,501,934	-		IAI47_11790	0.57	-2.4
2,501,934	-		IAI47_11790	0.57	+1.0
2,501,934	-		IAI47_11790	0.57	+0.8
2,501,934	-		IAI47_11790	0.57	+0.5
2,502,008	+		IAI47_11790	0.65	+1.0
2,502,009	-		IAI47_11790	0.65	-2.0
2,502,056	+		IAI47_11790	0.70	+0.3
2,502,056	+		IAI47_11790	0.70	-0.7
2,502,057	-		IAI47_11790	0.70	+0.0
2,502,057	-		IAI47_11790	0.70	-0.3
2,502,115	-		IAI47_11790	0.76	+3.0
2,502,192	+		IAI47_11790	0.84	-0.1
2,502,192	+		IAI47_11790	0.84	-0.2
2,502,192	+		IAI47_11790	0.84	-0.3
2,502,193	-		IAI47_11790	0.84	-0.4
2,502,193	-		IAI47_11790	0.84	-0.5
2,502,193	-		IAI47_11790	0.84	+0.5
2,502,216	+		IAI47_11790	0.87	-0.2
2,502,216	+		IAI47_11790	0.87	-1.8
2,502,219	+		IAI47_11790	0.87	+0.8
2,502,219	+		IAI47_11790	0.87	+0.5
2,502,220	-		IAI47_11790	0.87	+2.5
2,502,220	-		IAI47_11790	0.87	-1.0
2,502,220	-		IAI47_11790	0.87	+1.0
2,502,220	-		IAI47_11790	0.87	+1.9
2,502,220	-		IAI47_11790	0.87	+0.6
2,502,220	-		IAI47_11790	0.87	+1.8
2,502,336	+				+0.6
2,502,336	+				-0.3
2,502,337	-				-0.0
2,502,337	-				+1.4
2,502,337	-				+0.5
2,502,689	-		IAI47_11795	0.43	-0.3
2,502,689	-		IAI47_11795	0.43	+0.2
2,502,689	-		IAI47_11795	0.43	-0.6
2,502,689	-		IAI47_11795	0.43	-0.4
2,502,808	+		IAI47_11795	0.57	+0.9
2,502,812	+		IAI47_11795	0.57	-0.6
2,502,876	+		IAI47_11795	0.65	+0.2
2,502,876	+		IAI47_11795	0.65	+0.5
2,502,877	-				-1.6
2,502,903	+		IAI47_11795	0.68	+0.2
2,502,927	+		IAI47_11795	0.71	+0.1
2,502,927	+		IAI47_11795	0.71	-0.3
2,502,928	-		IAI47_11795	0.71	-0.0
2,502,928	-		IAI47_11795	0.71	-1.4
2,502,931	-		IAI47_11795	0.72	+0.2
2,502,963	+		IAI47_11795	0.76	+0.2
2,502,963	+		IAI47_11795	0.76	+1.2
2,502,963	+		IAI47_11795	0.76	-0.0
2,502,963	+		IAI47_11795	0.76	-0.4
2,502,963	+		IAI47_11795	0.76	-1.7
2,502,963	+		IAI47_11795	0.76	-0.4
2,502,963	+		IAI47_11795	0.76	+0.2
2,502,963	+		IAI47_11795	0.76	+1.6
2,502,963	+		IAI47_11795	0.76	-0.1
2,502,963	+		IAI47_11795	0.76	+0.2
2,502,963	+		IAI47_11795	0.76	-0.5
2,502,963	+		IAI47_11795	0.76	-0.5
2,502,963	+		IAI47_11795	0.76	+1.8
2,502,964	-		IAI47_11795	0.76	+0.2
2,502,964	-		IAI47_11795	0.76	-0.5
2,502,964	-		IAI47_11795	0.76	-0.4
2,502,964	-		IAI47_11795	0.76	-0.1
2,502,964	-		IAI47_11795	0.76	+0.2
2,502,964	-		IAI47_11795	0.76	-1.0
2,502,964	-		IAI47_11795	0.76	-1.1
2,502,964	-		IAI47_11795	0.76	-1.1
2,502,964	-		IAI47_11795	0.76	-2.3
2,503,020	+		IAI47_11795	0.82	+0.2
2,503,020	+		IAI47_11795	0.82	+0.4
2,503,021	-		IAI47_11795	0.83	-1.8
2,503,165	+				+0.1
2,503,165	+				+0.6
2,503,165	+				+0.2
2,503,166	-				-0.1
2,503,166	-				-0.7
2,503,166	-				-0.7
2,503,166	-				+2.9
2,503,166	-				-0.2
2,503,166	-				+0.5
2,503,166	-				-1.0
2,503,166	-				+0.4
2,503,170	+				+1.2
2,503,171	-				-0.5
2,503,171	-				-1.8
2,503,199	-				-0.2
2,503,200	+				-0.8
2,503,203	-				-0.8
2,503,232	-				+0.4
2,503,232	-				+0.5
2,503,249	-				-1.1
2,503,254	+				+0.8
2,503,254	+				+0.5
2,503,254	+				-0.0
2,503,254	+				-0.4
2,503,255	-				-1.1
2,503,255	-				+0.9
2,503,255	-				-0.1
2,503,255	-				+0.0
2,503,255	-				-0.6
2,503,255	-				+1.7
2,503,307	+				+0.5
2,503,307	+				+1.5
2,503,308	-				+0.8
2,503,308	-				+0.0
2,503,308	-				+0.6
2,503,308	-				-0.4
2,503,308	-				-0.4
2,503,308	-				+0.2
2,503,321	+				+0.8
2,503,322	-				+1.0