Strain Fitness in Pantoea sp. MT58 around IAI47_10245

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,163,662	+		IAI47_10235	0.87	+0.7
2,163,662	+		IAI47_10235	0.87	-0.6
2,163,663	-		IAI47_10235	0.87	+0.1
2,163,710	+				+0.7
2,163,710	+				-0.2
2,163,710	+				+0.1
2,163,711	-				+0.3
2,163,711	-				+1.0
2,163,711	-				+0.4
2,163,711	-				+2.3
2,163,711	-				+0.1
2,163,711	-				-0.6
2,163,712	+				+0.1
2,163,712	+				+0.4
2,163,713	-				+0.5
2,163,713	-				-1.4
2,163,713	-				-2.7
2,163,757	+				-0.6
2,163,757	+				+0.6
2,163,758	-				-0.9
2,163,758	-				+0.4
2,163,758	-				+0.1
2,163,758	-				-0.0
2,163,764	-				-0.4
2,163,832	+				-0.3
2,163,832	+				-1.2
2,163,832	+				+0.5
2,163,833	-				+1.4
2,163,895	+		IAI47_10240	0.12	-1.0
2,164,044	-		IAI47_10240	0.32	+0.6
2,164,116	+		IAI47_10240	0.41	-0.3
2,164,185	+		IAI47_10240	0.50	-0.4
2,164,185	+		IAI47_10240	0.50	-0.1
2,164,185	+		IAI47_10240	0.50	-0.9
2,164,185	+		IAI47_10240	0.50	+0.1
2,164,186	-		IAI47_10240	0.50	-0.5
2,164,186	-		IAI47_10240	0.50	+0.9
2,164,222	+		IAI47_10240	0.54	+0.6
2,164,254	+		IAI47_10240	0.58	+0.1
2,164,281	+		IAI47_10240	0.62	+0.3
2,164,282	-		IAI47_10240	0.62	+0.0
2,164,329	-		IAI47_10240	0.68	-1.3
2,164,337	+		IAI47_10240	0.69	+1.1
2,164,337	+		IAI47_10240	0.69	+0.1
2,164,337	+		IAI47_10240	0.69	-0.2
2,164,338	-		IAI47_10240	0.69	+0.0
2,164,338	-		IAI47_10240	0.69	+0.4
2,164,338	-		IAI47_10240	0.69	-0.9
2,164,380	-		IAI47_10240	0.75	+0.6
2,164,463	+		IAI47_10240	0.85	-0.0
2,164,519	+				+0.5
2,164,519	+				+0.4
2,164,519	+				-0.1
2,164,591	-				-0.0
2,164,591	-				-0.5
2,164,596	+				+0.1
2,164,596	+				-0.1
2,164,596	+				-0.4
2,164,596	+				+2.0
2,164,596	+				-0.1
2,164,596	+				-0.9
2,164,597	-				+0.8
2,164,597	-				+0.6
2,164,597	-				+1.7
2,164,634	+				-0.1
2,164,635	-				+0.0
2,164,747	+		IAI47_10245	0.20	-0.1
2,164,747	+		IAI47_10245	0.20	-0.3
2,164,747	+		IAI47_10245	0.20	-0.4
2,164,747	+		IAI47_10245	0.20	+0.1
2,164,747	+		IAI47_10245	0.20	-0.6
2,164,747	+		IAI47_10245	0.20	+0.1
2,164,747	+		IAI47_10245	0.20	-1.3
2,164,747	+		IAI47_10245	0.20	+0.2
2,164,747	+		IAI47_10245	0.20	-0.1
2,164,747	+		IAI47_10245	0.20	-1.3
2,164,747	+		IAI47_10245	0.20	-1.2
2,164,747	+		IAI47_10245	0.20	+1.1
2,164,747	+		IAI47_10245	0.20	+0.7
2,164,748	-		IAI47_10245	0.20	-0.0
2,164,748	-		IAI47_10245	0.20	+0.6
2,164,748	-		IAI47_10245	0.20	+0.5
2,164,748	-		IAI47_10245	0.20	+1.1
2,164,748	-		IAI47_10245	0.20	+0.1
2,164,748	-		IAI47_10245	0.20	+1.0
2,164,748	-		IAI47_10245	0.20	-0.2
2,164,750	-		IAI47_10245	0.20	+0.1
2,164,750	-		IAI47_10245	0.20	+0.1
2,164,867	+		IAI47_10245	0.34	-0.2
2,164,867	+		IAI47_10245	0.34	-1.7
2,164,868	-		IAI47_10245	0.34	+0.5
2,164,966	+		IAI47_10245	0.46	+0.8
2,164,966	+		IAI47_10245	0.46	+0.5
2,164,966	+		IAI47_10245	0.46	-0.1
2,164,966	+		IAI47_10245	0.46	+0.7
2,164,967	-		IAI47_10245	0.46	+0.1
2,164,967	-		IAI47_10245	0.46	+0.3
2,165,087	+		IAI47_10245	0.60	+0.5
2,165,088	-		IAI47_10245	0.60	-0.4
2,165,088	-		IAI47_10245	0.60	+0.3
2,165,183	-		IAI47_10245	0.71	-0.3
2,165,183	-		IAI47_10245	0.71	+0.4
2,165,183	-		IAI47_10245	0.71	+0.1
2,165,294	+		IAI47_10245	0.84	-0.0
2,165,294	+		IAI47_10245	0.84	+0.1
2,165,349	-				-0.6
2,165,451	+				+0.4
2,165,452	-				+0.6
2,165,452	-				-0.6
2,165,452	-				+0.5
2,165,452	-				+0.1
2,165,483	+				+0.7
2,165,484	-				+0.1
2,165,484	-				-0.3
2,165,484	-				-0.2
2,165,484	-				-0.3
2,165,515	+				+0.6
2,165,547	+				-0.5
2,165,548	-				-0.1
2,165,568	+				+0.0
2,165,568	+				-1.0
2,165,569	-				-0.4
2,165,569	-				-0.2
2,165,569	-				-1.1
2,165,574	-				-0.4
2,165,602	+				+0.1
2,165,602	+				+0.6
2,165,602	+				+0.4
2,165,602	+				-0.4
2,165,603	-				-0.1
2,165,603	-				-1.7
2,165,603	-				-0.1
2,165,615	+				-1.4
2,165,627	-				-0.4
2,165,636	-				+0.0
2,165,636	-				+0.1
2,165,714	+				+1.0
2,165,715	-				-1.2
2,165,715	-				-0.9
2,165,883	+		IAI47_10250	0.12	+0.1
2,165,884	-		IAI47_10250	0.12	-0.3
2,165,884	-		IAI47_10250	0.12	-1.0
2,165,884	-		IAI47_10250	0.12	-1.4
2,165,934	+		IAI47_10250	0.14	-1.2
2,165,958	+		IAI47_10250	0.16	+0.8
2,165,958	+		IAI47_10250	0.16	-0.0
2,165,959	-		IAI47_10250	0.16	-0.5
2,165,959	-		IAI47_10250	0.16	+0.4
2,166,011	+		IAI47_10250	0.18	-0.4
2,166,012	-		IAI47_10250	0.18	-2.4
2,166,012	-		IAI47_10250	0.18	-1.9
2,166,069	+		IAI47_10250	0.21	+0.7
2,166,069	+		IAI47_10250	0.21	+1.1
2,166,069	+		IAI47_10250	0.21	+0.1
2,166,069	+		IAI47_10250	0.21	-0.3
2,166,069	+		IAI47_10250	0.21	+0.7
2,166,070	-		IAI47_10250	0.21	+0.6
2,166,070	-		IAI47_10250	0.21	+0.1
2,166,070	-		IAI47_10250	0.21	-0.4
2,166,070	-		IAI47_10250	0.21	-0.6
2,166,159	+		IAI47_10250	0.25	+0.4
2,166,159	+		IAI47_10250	0.25	-1.4
2,166,159	+		IAI47_10250	0.25	+2.1
2,166,160	-		IAI47_10250	0.25	+0.1
2,166,160	-		IAI47_10250	0.25	-0.2
2,166,160	-		IAI47_10250	0.25	+0.6
2,166,160	-		IAI47_10250	0.25	+0.1
2,166,160	-		IAI47_10250	0.25	+2.5
2,166,231	+		IAI47_10250	0.28	-0.9
2,166,232	-		IAI47_10250	0.28	+0.1
2,166,232	-		IAI47_10250	0.28	-0.3
2,166,232	-		IAI47_10250	0.28	-0.0
2,166,356	+		IAI47_10250	0.34	-0.5
2,166,430	+		IAI47_10250	0.38	+0.0
2,166,430	+		IAI47_10250	0.38	-0.2
2,166,430	+		IAI47_10250	0.38	-0.9
2,166,431	-		IAI47_10250	0.38	+0.5