Strain Fitness in Pantoea sp. MT58 around IAI47_10175

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,149,761	+		IAI47_10160	0.78	+0.3
2,149,761	+		IAI47_10160	0.78	-1.7
2,149,761	+		IAI47_10160	0.78	-0.7
2,149,761	+		IAI47_10160	0.78	+0.1
2,149,762	-		IAI47_10160	0.78	+0.4
2,149,762	-		IAI47_10160	0.78	+0.1
2,149,762	-		IAI47_10160	0.78	+0.1
2,149,888	-				-1.7
2,149,899	+				-2.2
2,149,899	+				-0.6
2,149,899	+				-1.2
2,149,899	+				+0.1
2,149,899	+				-0.3
2,149,900	-				+0.3
2,149,900	-				-0.4
2,150,030	+		IAI47_10165	0.31	+1.2
2,150,031	-		IAI47_10165	0.31	-0.3
2,150,048	+		IAI47_10165	0.35	-1.0
2,150,048	+		IAI47_10165	0.35	-0.2
2,150,049	-		IAI47_10165	0.35	-0.8
2,150,049	-		IAI47_10165	0.35	-0.9
2,150,049	-		IAI47_10165	0.35	+0.5
2,150,090	+		IAI47_10165	0.44	-1.9
2,150,091	-		IAI47_10165	0.45	+1.1
2,150,161	+		IAI47_10165	0.61	+0.5
2,150,161	+		IAI47_10165	0.61	+0.4
2,150,161	+		IAI47_10165	0.61	-1.9
2,150,161	+		IAI47_10165	0.61	-0.7
2,150,161	+		IAI47_10165	0.61	+0.1
2,150,161	+		IAI47_10165	0.61	+0.1
2,150,161	+		IAI47_10165	0.61	+0.7
2,150,161	+		IAI47_10165	0.61	-0.3
2,150,162	-		IAI47_10165	0.61	+1.3
2,150,162	-		IAI47_10165	0.61	-0.6
2,150,164	+		IAI47_10165	0.61	-0.0
2,150,164	+		IAI47_10165	0.61	+0.6
2,150,164	+		IAI47_10165	0.61	-1.0
2,150,164	+		IAI47_10165	0.61	-0.2
2,150,164	+		IAI47_10165	0.61	-0.0
2,150,165	-		IAI47_10165	0.61	+1.1
2,150,165	-		IAI47_10165	0.61	+0.7
2,150,165	-		IAI47_10165	0.61	+0.9
2,150,206	+		IAI47_10165	0.71	-1.4
2,150,221	+		IAI47_10165	0.74	-0.9
2,150,316	+				+0.3
2,150,317	-				-0.5
2,150,324	+				+0.1
2,150,325	-				-0.7
2,150,370	+		IAI47_10170	0.10	-1.9
2,150,370	+		IAI47_10170	0.10	-0.3
2,150,370	+		IAI47_10170	0.10	-0.4
2,150,371	-		IAI47_10170	0.10	-0.1
2,150,371	-		IAI47_10170	0.10	-0.9
2,150,408	+		IAI47_10170	0.24	-0.6
2,150,414	-		IAI47_10170	0.26	-0.0
2,150,433	+		IAI47_10170	0.33	+1.1
2,150,451	-		IAI47_10170	0.40	-0.2
2,150,451	-		IAI47_10170	0.40	+0.9
2,150,452	+		IAI47_10170	0.40	-0.8
2,150,453	-		IAI47_10170	0.41	+1.1
2,150,453	-		IAI47_10170	0.41	+0.1
2,150,453	-		IAI47_10170	0.41	-1.4
2,150,453	-		IAI47_10170	0.41	-1.3
2,150,462	+		IAI47_10170	0.44	+0.1
2,150,463	+		IAI47_10170	0.44	-1.0
2,150,463	+		IAI47_10170	0.44	+0.5
2,150,463	+		IAI47_10170	0.44	-0.2
2,150,464	-		IAI47_10170	0.45	-0.1
2,150,464	-		IAI47_10170	0.45	-0.0
2,150,464	-		IAI47_10170	0.45	-1.2
2,150,612	+				+1.7
2,150,612	+				+0.9
2,150,613	-				+1.3
2,150,613	-				+1.0
2,150,629	+				-0.7
2,150,629	+				+1.0
2,150,629	+				+0.4
2,150,630	-				-2.0
2,150,630	-				-0.1
2,150,630	-				+2.1
2,150,630	-				-0.3
2,150,630	-				+1.1
2,150,630	-				-0.7
2,150,631	+				+0.1
2,150,632	-				-1.3
2,150,632	-				+0.5
2,150,632	-				-0.2
2,150,632	-				-0.4
2,150,652	-				+0.7
2,150,652	-				+1.4
2,150,654	+				+0.1
2,150,664	-				-1.4
2,150,704	+				+0.6
2,150,705	-				+0.3
2,150,716	+				-0.4
2,150,717	-				-1.0
2,150,732	-				+0.0
2,150,732	-				+0.2
2,150,776	-				+2.1
2,150,882	-		IAI47_10175	0.21	+0.4
2,150,895	+		IAI47_10175	0.22	-0.1
2,150,896	-		IAI47_10175	0.22	-0.9
2,150,896	-		IAI47_10175	0.22	+0.1
2,150,958	+		IAI47_10175	0.30	+0.4
2,150,983	-		IAI47_10175	0.33	+0.5
2,150,999	+		IAI47_10175	0.35	+0.1
2,151,000	-		IAI47_10175	0.35	+0.8
2,151,010	+		IAI47_10175	0.36	+1.7
2,151,010	+		IAI47_10175	0.36	+0.6
2,151,010	+		IAI47_10175	0.36	+0.7
2,151,010	+		IAI47_10175	0.36	-1.9
2,151,010	+		IAI47_10175	0.36	+0.8
2,151,010	+		IAI47_10175	0.36	-1.3
2,151,011	-		IAI47_10175	0.36	-0.0
2,151,036	+		IAI47_10175	0.39	-2.9
2,151,036	+		IAI47_10175	0.39	-1.7
2,151,036	+		IAI47_10175	0.39	-0.1
2,151,036	+		IAI47_10175	0.39	+1.3
2,151,036	+		IAI47_10175	0.39	+0.0
2,151,037	-		IAI47_10175	0.39	+0.5
2,151,037	-		IAI47_10175	0.39	-1.4
2,151,037	-		IAI47_10175	0.39	+2.0
2,151,037	-		IAI47_10175	0.39	-0.4
2,151,085	-		IAI47_10175	0.45	+2.0
2,151,114	+		IAI47_10175	0.48	+2.3
2,151,114	+		IAI47_10175	0.48	+0.5
2,151,115	-		IAI47_10175	0.48	-0.1
2,151,115	-		IAI47_10175	0.48	+0.1
2,151,115	-		IAI47_10175	0.48	-0.4
2,151,115	-		IAI47_10175	0.48	-2.0
2,151,115	-		IAI47_10175	0.48	+1.0
2,151,115	-		IAI47_10175	0.48	+0.7
2,151,165	+		IAI47_10175	0.54	+0.5
2,151,166	-		IAI47_10175	0.54	-0.9
2,151,180	+		IAI47_10175	0.56	+1.4
2,151,181	-		IAI47_10175	0.56	+0.5
2,151,207	+		IAI47_10175	0.59	-0.3
2,151,208	-		IAI47_10175	0.59	+1.3
2,151,208	-		IAI47_10175	0.59	+0.1
2,151,239	+		IAI47_10175	0.63	-0.6
2,151,239	+		IAI47_10175	0.63	-0.2
2,151,239	+		IAI47_10175	0.63	-0.4
2,151,239	+		IAI47_10175	0.63	-1.3
2,151,239	+		IAI47_10175	0.63	-0.6
2,151,239	+		IAI47_10175	0.63	+0.2
2,151,239	+		IAI47_10175	0.63	+1.0
2,151,240	-		IAI47_10175	0.63	+0.5
2,151,265	+		IAI47_10175	0.66	+0.7
2,151,265	+		IAI47_10175	0.66	+0.1
2,151,266	-		IAI47_10175	0.66	-0.1
2,151,266	-		IAI47_10175	0.66	+0.1
2,151,266	-		IAI47_10175	0.66	-0.2
2,151,330	+		IAI47_10175	0.74	+0.2
2,151,330	+		IAI47_10175	0.74	+2.1
2,151,331	-		IAI47_10175	0.74	+0.1
2,151,331	-		IAI47_10175	0.74	+0.1
2,151,331	-		IAI47_10175	0.74	+0.5
2,151,331	-		IAI47_10175	0.74	+0.6
2,151,331	-		IAI47_10175	0.74	+1.1
2,151,348	+		IAI47_10175	0.76	+0.1
2,151,349	-		IAI47_10175	0.76	+0.9
2,151,349	-		IAI47_10175	0.76	+1.7
2,151,349	-		IAI47_10175	0.76	-1.0
2,151,369	+		IAI47_10175	0.79	-0.6
2,151,369	+		IAI47_10175	0.79	-0.6
2,151,369	+		IAI47_10175	0.79	-0.7
2,151,369	+		IAI47_10175	0.79	-1.9
2,151,369	+		IAI47_10175	0.79	-1.3
2,151,370	-		IAI47_10175	0.79	+0.1
2,151,370	-		IAI47_10175	0.79	+0.7
2,151,370	-		IAI47_10175	0.79	+0.0
2,151,370	-		IAI47_10175	0.79	+1.1
2,151,370	-		IAI47_10175	0.79	-0.7
2,151,380	+		IAI47_10175	0.80	+0.6
2,151,380	+		IAI47_10175	0.80	+0.5
2,151,380	+		IAI47_10175	0.80	+0.3
2,151,381	-		IAI47_10175	0.80	-0.2
2,151,412	+		IAI47_10175	0.84	-0.1
2,151,413	-		IAI47_10175	0.84	+0.1
2,151,413	-		IAI47_10175	0.84	+0.5
2,151,447	-		IAI47_10175	0.88	+0.1
2,151,477	+				+1.7
2,151,478	-				+0.7
2,151,510	+				-0.4
2,151,538	-				+1.5
2,151,538	-				-0.3
2,151,539	+				+0.7
2,151,643	+				+0.1
2,151,644	-				+1.5
2,151,644	-				+0.3
2,151,720	+		IAI47_10180	0.13	-0.4
2,151,720	+		IAI47_10180	0.13	-0.3
2,151,720	+		IAI47_10180	0.13	+0.9
2,151,721	-		IAI47_10180	0.14	+0.1
2,151,763	+		IAI47_10180	0.17	+0.6
2,151,764	-		IAI47_10180	0.17	+1.1
2,151,764	-		IAI47_10180	0.17	+0.1
2,151,764	-		IAI47_10180	0.17	-0.4
2,151,820	+		IAI47_10180	0.21	-0.6
2,151,969	+		IAI47_10180	0.32	-1.7
2,151,970	-		IAI47_10180	0.32	-0.5
2,152,080	+		IAI47_10180	0.40	+0.3
2,152,081	-		IAI47_10180	0.40	+0.2
2,152,081	-		IAI47_10180	0.40	+0.8
2,152,120	+		IAI47_10180	0.43	+0.5
2,152,121	-		IAI47_10180	0.43	+0.6
2,152,121	-		IAI47_10180	0.43	-1.3
2,152,128	+		IAI47_10180	0.43	-0.5
2,152,128	+		IAI47_10180	0.43	-0.9
2,152,128	+		IAI47_10180	0.43	+0.1
2,152,128	+		IAI47_10180	0.43	+0.3
2,152,129	-		IAI47_10180	0.43	-0.4
2,152,137	+		IAI47_10180	0.44	+0.6
2,152,137	+		IAI47_10180	0.44	-0.2
2,152,137	+		IAI47_10180	0.44	-0.6
2,152,137	+		IAI47_10180	0.44	+0.1
2,152,137	+		IAI47_10180	0.44	-0.4
2,152,138	-		IAI47_10180	0.44	-0.6
2,152,156	-		IAI47_10180	0.45	-0.7
2,152,200	+		IAI47_10180	0.49	+0.4
2,152,200	+		IAI47_10180	0.49	-0.7
2,152,201	-		IAI47_10180	0.49	+1.0
2,152,201	-		IAI47_10180	0.49	-1.2
2,152,201	-		IAI47_10180	0.49	-0.7
2,152,201	-		IAI47_10180	0.49	-0.2
2,152,233	+		IAI47_10180	0.51	+0.1
2,152,233	+		IAI47_10180	0.51	+0.5
2,152,233	+		IAI47_10180	0.51	-0.4
2,152,233	+		IAI47_10180	0.51	-1.4
2,152,233	+		IAI47_10180	0.51	+0.3
2,152,233	+		IAI47_10180	0.51	+2.5
2,152,234	-		IAI47_10180	0.51	+0.4
2,152,234	-		IAI47_10180	0.51	+1.7
2,152,234	-		IAI47_10180	0.51	+1.6
2,152,234	-		IAI47_10180	0.51	-0.3
2,152,234	-		IAI47_10180	0.51	+0.7
2,152,234	-		IAI47_10180	0.51	-0.4
2,152,234	-		IAI47_10180	0.51	+0.8
2,152,234	-		IAI47_10180	0.51	+0.5
2,152,234	-		IAI47_10180	0.51	-1.5
2,152,234	-		IAI47_10180	0.51	+1.1
2,152,234	-		IAI47_10180	0.51	-0.1
2,152,237	+		IAI47_10180	0.51	-1.7
2,152,237	+		IAI47_10180	0.51	+0.1
2,152,238	-		IAI47_10180	0.51	-0.0
2,152,238	-		IAI47_10180	0.51	+0.7
2,152,252	+		IAI47_10180	0.52	+0.3
2,152,252	+		IAI47_10180	0.52	+0.3
2,152,252	+		IAI47_10180	0.52	-1.2
2,152,252	+		IAI47_10180	0.52	+0.1
2,152,333	-		IAI47_10180	0.58	-1.3
2,152,381	+		IAI47_10180	0.62	+0.1
2,152,381	+		IAI47_10180	0.62	-0.8
2,152,426	+		IAI47_10180	0.65	-0.2
2,152,426	+		IAI47_10180	0.65	-0.9
2,152,426	+		IAI47_10180	0.65	-0.9
2,152,426	+		IAI47_10180	0.65	+0.1
2,152,427	-		IAI47_10180	0.65	-0.3
2,152,517	+		IAI47_10180	0.72	-1.5
2,152,517	+		IAI47_10180	0.72	+0.1
2,152,518	-		IAI47_10180	0.72	+0.3
2,152,545	+		IAI47_10180	0.74	-1.4
2,152,545	+		IAI47_10180	0.74	+0.7
2,152,545	+				+0.1
2,152,545	+		IAI47_10180	0.74	+0.5
2,152,545	+		IAI47_10180	0.74	-0.2
2,152,545	+		IAI47_10180	0.74	+0.1
2,152,546	-		IAI47_10180	0.74	-0.3
2,152,546	-		IAI47_10180	0.74	-1.0
2,152,546	-		IAI47_10180	0.74	-1.9
2,152,546	-		IAI47_10180	0.74	+0.2
2,152,546	-		IAI47_10180	0.74	+0.7
2,152,546	-		IAI47_10180	0.74	-2.4
2,152,546	-		IAI47_10180	0.74	-0.0
2,152,549	+		IAI47_10180	0.74	+1.1
2,152,549	+		IAI47_10180	0.74	+1.5
2,152,549	+		IAI47_10180	0.74	-1.4
2,152,549	+		IAI47_10180	0.74	-0.3
2,152,549	+		IAI47_10180	0.74	-0.0
2,152,549	+		IAI47_10180	0.74	-1.2