Strain Fitness in Pantoea sp. MT58 around IAI47_10015

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
2,117,426	-				-0.5
2,117,426	-				+0.7
2,117,545	-		IAI47_10010	0.21	+0.4
2,117,649	+		IAI47_10010	0.31	-0.7
2,117,649	+		IAI47_10010	0.31	+0.1
2,117,650	-		IAI47_10010	0.31	+0.3
2,117,650	-		IAI47_10010	0.31	-0.3
2,117,699	-		IAI47_10010	0.35	-0.3
2,117,805	+		IAI47_10010	0.46	+0.2
2,117,806	-		IAI47_10010	0.46	-0.4
2,117,806	-		IAI47_10010	0.46	-0.1
2,117,863	+		IAI47_10010	0.51	-0.6
2,117,864	-		IAI47_10010	0.51	+0.1
2,117,864	-		IAI47_10010	0.51	+0.1
2,117,913	+		IAI47_10010	0.56	+1.1
2,117,913	+		IAI47_10010	0.56	-0.9
2,117,913	+		IAI47_10010	0.56	+1.4
2,117,914	-		IAI47_10010	0.56	+2.1
2,117,914	-		IAI47_10010	0.56	-0.7
2,117,914	-		IAI47_10010	0.56	-0.3
2,117,914	-		IAI47_10010	0.56	+2.1
2,117,963	-		IAI47_10010	0.61	+0.9
2,118,108	+		IAI47_10010	0.75	+0.4
2,118,109	-		IAI47_10010	0.75	+0.1
2,118,171	+		IAI47_10010	0.81	-1.1
2,118,171	+		IAI47_10010	0.81	-0.1
2,118,172	-		IAI47_10010	0.81	+0.1
2,118,172	-		IAI47_10010	0.81	-1.2
2,118,241	-		IAI47_10010	0.88	+0.1
2,118,241	-		IAI47_10010	0.88	+0.0
2,118,244	+		IAI47_10010	0.88	-0.4
2,118,244	+		IAI47_10010	0.88	+0.1
2,118,244	+		IAI47_10010	0.88	+0.6
2,118,244	+		IAI47_10010	0.88	+0.7
2,118,245	-		IAI47_10010	0.88	-0.9
2,118,245	-		IAI47_10010	0.88	+0.5
2,118,245	-		IAI47_10010	0.88	+0.7
2,118,245	-		IAI47_10010	0.88	-0.5
2,118,245	-		IAI47_10010	0.88	-0.9
2,118,245	-		IAI47_10010	0.88	+0.5
2,118,248	-		IAI47_10010	0.88	-0.6
2,118,248	-		IAI47_10010	0.88	-0.6
2,118,315	+				-0.0
2,118,346	+				-0.1
2,118,347	-				+0.7
2,118,410	+				+1.7
2,118,410	+				+0.5
2,118,411	-				+0.0
2,118,416	+				-0.9
2,118,417	-				-0.1
2,118,498	+				+0.6
2,118,498	+				+0.5
2,118,499	-				-0.3
2,118,509	+				-1.9
2,118,616	+		IAI47_10015	0.19	+0.4
2,118,616	+		IAI47_10015	0.19	-0.3
2,118,617	-		IAI47_10015	0.19	+0.9
2,118,617	-		IAI47_10015	0.19	+1.3
2,118,617	-		IAI47_10015	0.19	-0.3
2,118,619	+		IAI47_10015	0.20	+1.0
2,118,619	+		IAI47_10015	0.20	-0.1
2,118,620	-		IAI47_10015	0.20	+0.5
2,118,620	-		IAI47_10015	0.20	-0.5
2,118,620	-		IAI47_10015	0.20	+1.1
2,118,620	-		IAI47_10015	0.20	-0.2
2,118,620	-		IAI47_10015	0.20	+1.0
2,118,620	-		IAI47_10015	0.20	+0.4
2,118,620	-		IAI47_10015	0.20	+0.8
2,118,620	-		IAI47_10015	0.20	-0.2
2,118,620	-		IAI47_10015	0.20	-0.1
2,118,620	-		IAI47_10015	0.20	+1.5
2,118,620	-		IAI47_10015	0.20	-0.3
2,118,631	+		IAI47_10015	0.21	-0.4
2,118,895	+		IAI47_10015	0.48	+0.0
2,118,896	-		IAI47_10015	0.48	+0.1
2,118,918	-		IAI47_10015	0.50	+1.3
2,118,918	-		IAI47_10015	0.50	+0.6
2,118,918	-		IAI47_10015	0.50	-0.3
2,118,919	+		IAI47_10015	0.50	+0.1
2,118,919	+		IAI47_10015	0.50	+0.9
2,118,919	+		IAI47_10015	0.50	-0.2
2,118,920	-		IAI47_10015	0.50	-1.3
2,118,967	-		IAI47_10015	0.55	+1.0
2,119,000	+		IAI47_10015	0.59	-0.7
2,119,001	-		IAI47_10015	0.59	+1.6
2,119,018	+		IAI47_10015	0.60	-0.3
2,119,019	-		IAI47_10015	0.60	-0.2
2,119,140	-		IAI47_10015	0.73	+0.6
2,119,262	+		IAI47_10015	0.85	+0.7
2,119,263	-		IAI47_10015	0.85	-0.7
2,119,263	-		IAI47_10015	0.85	-0.9
2,119,287	+		IAI47_10015	0.88	-0.9
2,119,288	-		IAI47_10015	0.88	-0.4
2,119,288	-		IAI47_10015	0.88	+0.4
2,119,348	+				+1.4
2,119,348	+				+0.7
2,119,348	+				-1.1
2,119,348	+				+0.8
2,119,348	+				-1.3
2,119,349	-				+2.2
2,119,479	-				-0.3
2,119,498	-				+0.4
2,119,498	-				+0.1
2,119,498	-				-0.1
2,119,602	+				-0.4
2,119,709	+				+0.4
2,119,709	+				-0.9
2,119,709	+				-0.7
2,119,709	+				-0.3
2,119,709	+				-1.0
2,119,710	-				-0.4
2,119,710	-				-0.9
2,119,710	-				-0.4
2,119,787	+				-0.3
2,119,787	+				+0.6
2,119,788	-				-0.2
2,119,788	-				-0.1
2,119,804	-				+0.4
2,119,883	+				+0.3
2,119,883	+				+0.1
2,119,884	-				+1.1
2,119,884	-				+0.1
2,119,884	-				+1.3
2,119,900	-				-0.5
2,120,112	+		IAI47_10020	0.17	-0.7
2,120,151	-		IAI47_10020	0.19	+0.6
2,120,178	-		IAI47_10020	0.20	+0.7
2,120,202	+		IAI47_10020	0.21	+1.5
2,120,203	-		IAI47_10020	0.21	+0.7
2,120,203	-		IAI47_10020	0.21	-0.4
2,120,232	+		IAI47_10020	0.22	-0.0
2,120,232	+		IAI47_10020	0.22	-0.4
2,120,232	+		IAI47_10020	0.22	-0.3
2,120,233	-		IAI47_10020	0.22	+0.7
2,120,243	+		IAI47_10020	0.23	+0.9
2,120,243	+		IAI47_10020	0.23	-1.2
2,120,244	-		IAI47_10020	0.23	-0.2
2,120,244	-		IAI47_10020	0.23	+0.5
2,120,244	-		IAI47_10020	0.23	-1.1
2,120,244	-		IAI47_10020	0.23	+0.9
2,120,250	-		IAI47_10020	0.23	+0.9
2,120,316	+		IAI47_10020	0.26	+0.0
2,120,317	-		IAI47_10020	0.26	+0.5
2,120,317	-		IAI47_10020	0.26	+0.2
2,120,317	-		IAI47_10020	0.26	-0.1
2,120,317	-		IAI47_10020	0.26	+0.1
2,120,379	+		IAI47_10020	0.28	-0.3
2,120,387	+		IAI47_10020	0.29	+0.5
2,120,387	+		IAI47_10020	0.29	-1.4
2,120,388	-		IAI47_10020	0.29	-0.3
2,120,388	-		IAI47_10020	0.29	-0.4