Strain Fitness in Pantoea sp. MT58 around IAI47_09290

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,956,616	+				+0.2
1,956,616	+				-0.2
1,956,629	+				-0.6
1,956,653	-		IAI47_09280	0.15	+0.8
1,956,667	+		IAI47_09280	0.19	+1.4
1,956,668	-		IAI47_09280	0.19	+0.6
1,956,699	+		IAI47_09280	0.29	+0.8
1,956,700	-		IAI47_09280	0.29	+0.8
1,956,700	-		IAI47_09280	0.29	+0.2
1,956,700	-		IAI47_09280	0.29	-0.3
1,956,700	-		IAI47_09280	0.29	+0.8
1,956,700	-		IAI47_09280	0.29	+2.0
1,956,831	+		IAI47_09280	0.70	-0.6
1,956,831	+		IAI47_09280	0.70	+0.5
1,956,873	+		IAI47_09280	0.83	-0.5
1,956,873	+		IAI47_09280	0.83	-1.1
1,956,895	+		IAI47_09280	0.90	+0.6
1,956,896	-				+1.3
1,956,969	+				+0.9
1,956,969	+				-1.8
1,956,969	+				-0.7
1,956,969	+				+0.6
1,956,969	+				+0.3
1,956,970	-				-0.1
1,956,970	-				+0.4
1,956,970	-				+1.0
1,956,970	-				+1.0
1,956,970	-				-0.5
1,956,970	-				+0.4
1,956,977	+				+1.2
1,956,977	+				+2.5
1,956,998	+				-0.2
1,957,001	+				+0.1
1,957,001	+				+1.8
1,957,001	+				+0.0
1,957,002	-				-1.0
1,957,002	-				+1.0
1,957,010	+				+0.5
1,957,011	-				+1.2
1,957,029	+				-0.6
1,957,030	-				-0.6
1,957,030	-				+0.2
1,957,032	+		IAI47_09285	0.11	-0.7
1,957,033	-		IAI47_09285	0.11	+0.5
1,957,033	-		IAI47_09285	0.11	-2.3
1,957,033	-		IAI47_09285	0.11	+1.1
1,957,033	-		IAI47_09285	0.11	+0.5
1,957,033	-		IAI47_09285	0.11	-0.6
1,957,033	-		IAI47_09285	0.11	-0.7
1,957,140	+		IAI47_09285	0.61	-0.5
1,957,141	-		IAI47_09285	0.61	-1.1
1,957,141	-		IAI47_09285	0.61	-0.8
1,957,141	-		IAI47_09285	0.61	+0.2
1,957,141	-		IAI47_09285	0.61	+3.0
1,957,141	-		IAI47_09285	0.61	-0.2
1,957,150	-		IAI47_09285	0.65	+0.8
1,957,175	-		IAI47_09285	0.77	-0.5
1,957,175	-		IAI47_09285	0.77	+0.4
1,957,182	+		IAI47_09285	0.80	+2.3
1,957,219	-				-0.2
1,957,219	-				+0.0
1,957,219	-				-1.0
1,957,224	+				+0.6
1,957,224	+				-1.3
1,957,224	+				-0.8
1,957,224	+				+1.2
1,957,224	+				-0.8
1,957,225	-				+0.2
1,957,225	-				-1.6
1,957,225	-				-1.0
1,957,225	-				-0.1
1,957,225	-				-1.4
1,957,263	+				-0.2
1,957,263	+				-0.9
1,957,264	-				-0.1
1,957,264	-				+0.6
1,957,264	-				-0.0
1,957,264	-				+0.2
1,957,266	+				+0.2
1,957,267	-				-1.4
1,957,267	-				+0.2
1,957,267	-				+0.2
1,957,268	+				-0.7
1,957,268	+				+0.8
1,957,269	-				-0.4
1,957,269	-				+0.6
1,957,269	-				-0.1
1,957,305	-				-0.6
1,957,305	-				+1.0
1,957,305	-				-1.6
1,957,326	+				+0.6
1,957,326	+				+1.0
1,957,327	-				-0.0
1,957,327	-				-0.1
1,957,327	-				+0.9
1,957,329	-				-0.1
1,957,358	+				+0.6
1,957,430	+				-0.3
1,957,430	+				+0.2
1,957,498	+				-0.8
1,957,499	-				+0.9
1,957,500	+				-0.0
1,957,501	-				+1.2
1,957,515	+				+0.2
1,957,588	+				-0.6
1,957,588	+				-0.6
1,957,589	-				-1.0
1,957,589	-				+0.2
1,957,589	-				-0.2
1,957,589	-				+0.5
1,957,589	-				+0.2
1,957,620	+				+0.7
1,957,629	-				+1.8
1,957,629	-				+1.2
1,957,645	+		IAI47_09290	0.10	-0.2
1,957,645	+		IAI47_09290	0.10	-1.2
1,957,645	+		IAI47_09290	0.10	+0.3
1,957,646	-		IAI47_09290	0.10	+0.9
1,957,646	-		IAI47_09290	0.10	+0.2
1,957,646	-		IAI47_09290	0.10	+1.8
1,957,696	+		IAI47_09290	0.17	-0.2
1,957,696	+		IAI47_09290	0.17	+0.0
1,957,697	-		IAI47_09290	0.18	+0.8
1,957,697	-		IAI47_09290	0.18	+0.0
1,957,697	-		IAI47_09290	0.18	+0.2
1,957,715	+		IAI47_09290	0.20	-0.2
1,957,716	-		IAI47_09290	0.20	-0.1
1,957,770	+		IAI47_09290	0.28	+0.2
1,957,770	+		IAI47_09290	0.28	+0.9
1,957,770	+		IAI47_09290	0.28	-1.0
1,957,771	-		IAI47_09290	0.28	+0.5
1,957,771	-		IAI47_09290	0.28	+0.6
1,957,773	+		IAI47_09290	0.28	+0.2
1,957,773	+		IAI47_09290	0.28	-0.0
1,957,773	+		IAI47_09290	0.28	-0.2
1,957,773	+		IAI47_09290	0.28	-0.7
1,957,773	+		IAI47_09290	0.28	+0.3
1,957,773	+		IAI47_09290	0.28	-0.8
1,957,773	+		IAI47_09290	0.28	+1.4
1,957,774	-		IAI47_09290	0.29	-0.2
1,957,774	-		IAI47_09290	0.29	+1.9
1,957,774	-		IAI47_09290	0.29	+0.1
1,957,823	+		IAI47_09290	0.36	+0.9
1,957,858	+		IAI47_09290	0.41	+0.2
1,957,859	-		IAI47_09290	0.41	+0.4
1,957,859	-		IAI47_09290	0.41	+0.0
1,957,941	-		IAI47_09290	0.53	-0.7
1,957,973	-		IAI47_09290	0.57	+0.9
1,957,994	+		IAI47_09290	0.60	+0.7
1,957,994	+		IAI47_09290	0.60	-0.4
1,957,994	+		IAI47_09290	0.60	+0.6
1,957,995	-		IAI47_09290	0.60	-0.1
1,958,105	-		IAI47_09290	0.76	+1.2
1,958,125	-		IAI47_09290	0.79	-1.0
1,958,125	-		IAI47_09290	0.79	+0.1
1,958,156	+		IAI47_09290	0.83	-0.4
1,958,156	+		IAI47_09290	0.83	+0.8
1,958,156	+		IAI47_09290	0.83	+0.3
1,958,156	+		IAI47_09290	0.83	-1.2
1,958,156	+		IAI47_09290	0.83	+0.2
1,958,156	+		IAI47_09290	0.83	+0.8
1,958,156	+		IAI47_09290	0.83	+0.2
1,958,157	-		IAI47_09290	0.83	+1.4
1,958,157	-		IAI47_09290	0.83	-0.2
1,958,157	-		IAI47_09290	0.83	-0.3
1,958,157	-		IAI47_09290	0.83	-0.8
1,958,157	-		IAI47_09290	0.83	+0.2
1,958,157	-		IAI47_09290	0.83	+0.5
1,958,157	-		IAI47_09290	0.83	+1.8
1,958,158	+		IAI47_09290	0.84	+1.2
1,958,158	+		IAI47_09290	0.84	+0.4
1,958,158	+		IAI47_09290	0.84	-0.1
1,958,158	+		IAI47_09290	0.84	+0.2
1,958,158	+		IAI47_09290	0.84	-0.4
1,958,159	-		IAI47_09290	0.84	-0.3
1,958,159	-		IAI47_09290	0.84	-1.4
1,958,159	-		IAI47_09290	0.84	-0.8
1,958,159	-		IAI47_09290	0.84	-0.3
1,958,183	-		IAI47_09290	0.87	+0.0
1,958,183	-		IAI47_09290	0.87	+0.3
1,958,183	-		IAI47_09290	0.87	-0.3
1,958,203	+				-0.7
1,958,204	-				+0.8
1,958,223	+				-0.0
1,958,223	+				+0.9
1,958,224	-				+0.9
1,958,224	-				-1.2
1,958,228	+				+1.4
1,958,259	-				-0.5
1,958,320	+				+0.2
1,958,320	+				-1.0
1,958,321	-				-1.3
1,958,321	-				+0.2
1,958,321	-				+0.4
1,958,342	-				-0.3
1,958,405	+				-1.1
1,958,405	+				-0.3
1,958,406	-				+0.5
1,958,408	+				+2.0
1,958,409	-				-0.2
1,958,409	-				+0.5
1,958,422	+				+0.7
1,958,423	-				-0.6
1,958,423	-				-2.4
1,958,423	-				-0.2
1,958,487	+				+0.7
1,958,487	+				+0.8
1,958,487	+				-0.4
1,958,487	+				-0.4
1,958,488	-				+1.2
1,958,488	-				+1.7
1,958,488	-				+0.6
1,958,488	-				+0.6
1,958,508	-				+0.3
1,958,535	+				-0.4
1,958,565	+				-1.0
1,958,566	-				-0.1
1,958,566	-				+2.4
1,958,566	-				+0.8
1,958,590	+		IAI47_09295	0.10	+0.2
1,958,590	+		IAI47_09295	0.10	-0.2
1,958,591	-		IAI47_09295	0.10	-0.5
1,958,591	-		IAI47_09295	0.10	-0.1
1,958,591	-		IAI47_09295	0.10	-0.4
1,958,658	+		IAI47_09295	0.17	-1.8
1,958,659	-		IAI47_09295	0.17	+1.2
1,958,659	-		IAI47_09295	0.17	-0.5
1,958,672	+		IAI47_09295	0.19	+0.2
1,958,696	+		IAI47_09295	0.21	-0.1
1,958,697	-		IAI47_09295	0.21	+0.5
1,958,703	+		IAI47_09295	0.22	+0.4
1,958,790	-		IAI47_09295	0.31	+0.8
1,958,814	-				-0.6
1,958,831	+		IAI47_09295	0.35	-0.1
1,958,831	+		IAI47_09295	0.35	+0.3
1,958,863	+		IAI47_09295	0.38	-0.3
1,958,863	+		IAI47_09295	0.38	-0.4
1,958,863	+		IAI47_09295	0.38	+0.8
1,958,864	-		IAI47_09295	0.38	+0.1
1,958,864	-		IAI47_09295	0.38	-0.0
1,958,864	-		IAI47_09295	0.38	-0.0
1,958,864	-		IAI47_09295	0.38	-0.6
1,958,864	-		IAI47_09295	0.38	-0.2
1,958,864	-		IAI47_09295	0.38	-1.4
1,958,864	-		IAI47_09295	0.38	+1.6
1,958,884	+		IAI47_09295	0.40	+0.8
1,958,955	+		IAI47_09295	0.47	-0.6
1,958,955	+		IAI47_09295	0.47	+1.8
1,958,955	+		IAI47_09295	0.47	+0.4
1,958,956	-		IAI47_09295	0.48	+0.2
1,958,964	+		IAI47_09295	0.48	-0.6
1,959,039	-		IAI47_09295	0.56	+0.7
1,959,083	+		IAI47_09295	0.60	-0.6
1,959,083	+		IAI47_09295	0.60	+0.5
1,959,087	+		IAI47_09295	0.61	+0.9
1,959,087	+		IAI47_09295	0.61	+1.8
1,959,087	+		IAI47_09295	0.61	+1.8
1,959,087	+		IAI47_09295	0.61	+0.2
1,959,087	+		IAI47_09295	0.61	+0.2
1,959,088	-		IAI47_09295	0.61	+0.8
1,959,088	-		IAI47_09295	0.61	-2.3
1,959,088	-		IAI47_09295	0.61	-1.1
1,959,088	-		IAI47_09295	0.61	-0.5
1,959,088	-		IAI47_09295	0.61	+0.0
1,959,088	-		IAI47_09295	0.61	+0.0
1,959,088	-		IAI47_09295	0.61	-2.0
1,959,088	-		IAI47_09295	0.61	+0.2
1,959,130	-		IAI47_09295	0.65	-1.1
1,959,130	-		IAI47_09295	0.65	-0.5
1,959,195	+		IAI47_09295	0.72	+1.8
1,959,196	-		IAI47_09295	0.72	+1.1
1,959,196	-		IAI47_09295	0.72	+0.7
1,959,201	+		IAI47_09295	0.72	+1.0
1,959,210	+		IAI47_09295	0.73	+1.0