Strain Fitness in Pantoea sp. MT58 around IAI47_09250

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,948,797	+				+1.2
1,948,819	-				-0.4
1,948,829	+				-0.2
1,948,848	+				+0.8
1,948,849	-				-0.3
1,948,868	-				+2.8
1,948,879	-				+0.2
1,948,900	+				-0.4
1,948,901	-				-0.5
1,948,901	-				-0.4
1,948,904	-				-0.0
1,948,958	+				-0.1
1,949,028	+				+1.8
1,949,028	+				+1.2
1,949,042	+		IAI47_09245	0.12	+0.9
1,949,042	+		IAI47_09245	0.12	-0.2
1,949,042	+		IAI47_09245	0.12	+0.2
1,949,042	+		IAI47_09245	0.12	+0.5
1,949,147	+		IAI47_09245	0.78	+1.8
1,949,147	+		IAI47_09245	0.78	+0.8
1,949,147	+		IAI47_09245	0.78	-0.2
1,949,147	+		IAI47_09245	0.78	+0.1
1,949,147	+		IAI47_09245	0.78	-0.8
1,949,150	+		IAI47_09245	0.80	+1.2
1,949,150	+		IAI47_09245	0.80	+1.3
1,949,150	+		IAI47_09245	0.80	-1.4
1,949,179	+				+1.2
1,949,180	-				+1.7
1,949,209	+				-0.6
1,949,332	+				+3.3
1,949,333	-				+2.5
1,949,353	+				-1.8
1,949,359	+				+1.3
1,949,359	+				-0.2
1,949,360	-				+0.5
1,949,360	-				+1.3
1,949,381	+				-1.1
1,949,382	-				-1.4
1,949,436	-				-0.2
1,949,528	+				-0.3
1,949,528	+				-1.1
1,949,528	+				-0.8
1,949,528	+				-1.6
1,949,528	+				-0.0
1,949,529	-				-1.0
1,949,534	+				-0.2
1,949,534	+				+0.1
1,949,534	+				+0.0
1,949,557	-				-0.2
1,949,557	-				-1.4
1,949,717	+				+0.2
1,949,728	+				-1.7
1,949,745	-				-0.1
1,949,751	+				+1.8
1,949,751	+				+0.7
1,949,778	+				+0.2
1,949,778	+				-0.2
1,949,778	+				-1.1
1,949,778	+				-0.8
1,949,778	+				+0.2
1,949,778	+				-1.4
1,949,778	+				-1.1
1,949,778	+				-0.6
1,949,778	+				-0.4
1,949,778	+				+0.8
1,949,779	-				-0.0
1,949,779	-				+0.4
1,949,779	-				+1.2
1,949,779	-				-0.4
1,949,779	-				-0.4
1,949,779	-				-0.4
1,949,779	-				+0.5
1,949,779	-				-0.6
1,949,787	+				-1.0
1,949,813	+				-0.0
1,949,880	+				-2.1
1,949,880	+				-0.8
1,949,880	+				-0.7
1,949,880	+				+0.2
1,949,881	-				-0.6
1,949,881	-				-0.4
1,949,882	+				-1.8
1,949,882	+				-1.0
1,949,883	-				-2.2
1,949,883	-				-0.1
1,949,883	-				-0.1
1,949,964	+				-1.3
1,949,964	+				-0.4
1,949,964	+				-0.1
1,949,964	+				-0.5
1,949,964	+				-1.2
1,949,964	+				+0.3
1,949,965	-				-0.2
1,950,036	-				-1.4
1,950,036	-				-1.0
1,950,036	-				-0.6
1,950,038	+				-1.7
1,950,038	+				-0.6
1,950,038	+				+0.6
1,950,038	+				-0.8
1,950,039	-				-1.0
1,950,059	+		IAI47_09250	0.10	-0.6
1,950,068	+		IAI47_09250	0.11	-0.5
1,950,068	+		IAI47_09250	0.11	-0.8
1,950,069	-		IAI47_09250	0.11	+1.0
1,950,069	-		IAI47_09250	0.11	-0.6
1,950,098	+		IAI47_09250	0.12	-0.8
1,950,099	-		IAI47_09250	0.12	-1.3
1,950,247	+		IAI47_09250	0.17	+1.1
1,950,247	+		IAI47_09250	0.17	-1.0
1,950,247	+		IAI47_09250	0.17	+0.6
1,950,247	+		IAI47_09250	0.17	-1.4
1,950,247	+		IAI47_09250	0.17	-1.6
1,950,248	-		IAI47_09250	0.17	-0.2
1,950,248	-		IAI47_09250	0.17	-2.4
1,950,248	-		IAI47_09250	0.17	-0.8
1,950,282	+		IAI47_09250	0.19	-0.8
1,950,282	+		IAI47_09250	0.19	-2.0
1,950,283	-		IAI47_09250	0.19	-1.0
1,950,283	-		IAI47_09250	0.19	-0.2
1,950,297	-		IAI47_09250	0.19	+0.5
1,950,332	+		IAI47_09250	0.21	-0.9
1,950,337	+		IAI47_09250	0.21	-1.1
1,950,338	-		IAI47_09250	0.21	+0.2
1,950,338	-		IAI47_09250	0.21	-1.0
1,950,382	+		IAI47_09250	0.22	+0.9
1,950,382	+		IAI47_09250	0.22	+0.2
1,950,382	+		IAI47_09250	0.22	-1.0
1,950,382	+		IAI47_09250	0.22	-1.0
1,950,382	+		IAI47_09250	0.22	-0.8
1,950,382	+		IAI47_09250	0.22	-2.1
1,950,382	+		IAI47_09250	0.22	+1.6
1,950,382	+		IAI47_09250	0.22	-0.6
1,950,382	+		IAI47_09250	0.22	-1.0
1,950,382	+		IAI47_09250	0.22	+0.9
1,950,382	+		IAI47_09250	0.22	-0.9
1,950,383	-		IAI47_09250	0.23	-0.3
1,950,383	-		IAI47_09250	0.23	+0.2
1,950,383	-		IAI47_09250	0.23	+1.5
1,950,383	-		IAI47_09250	0.23	-0.4
1,950,383	-		IAI47_09250	0.23	-1.6
1,950,383	-		IAI47_09250	0.23	-0.0
1,950,383	-		IAI47_09250	0.23	-1.1
1,950,461	+		IAI47_09250	0.25	-0.1
1,950,524	+		IAI47_09250	0.28	-2.3
1,950,524	+		IAI47_09250	0.28	-1.3
1,950,524	+		IAI47_09250	0.28	-0.9
1,950,525	-		IAI47_09250	0.28	-0.8
1,950,525	-		IAI47_09250	0.28	-1.2
1,950,585	+		IAI47_09250	0.30	-0.3
1,950,606	+		IAI47_09250	0.31	-0.6
1,950,606	+		IAI47_09250	0.31	-0.4
1,950,606	+		IAI47_09250	0.31	-0.3
1,950,606	+		IAI47_09250	0.31	+1.2
1,950,606	+		IAI47_09250	0.31	+0.2
1,950,606	+		IAI47_09250	0.31	-1.0
1,950,607	-		IAI47_09250	0.31	-0.6
1,950,684	+		IAI47_09250	0.34	-0.4
1,950,684	+		IAI47_09250	0.34	-2.6
1,950,684	+		IAI47_09250	0.34	-1.6
1,950,706	+		IAI47_09250	0.35	-0.6
1,950,707	-		IAI47_09250	0.35	-0.9
1,950,754	+		IAI47_09250	0.36	+0.2
1,950,754	+		IAI47_09250	0.36	+0.3
1,950,754	+		IAI47_09250	0.36	-0.7
1,950,754	+		IAI47_09250	0.36	-0.0
1,950,754	+		IAI47_09250	0.36	-0.7
1,950,755	-		IAI47_09250	0.36	+0.4
1,950,805	+		IAI47_09250	0.38	-0.2
1,950,805	+		IAI47_09250	0.38	-1.4
1,950,855	+		IAI47_09250	0.40	+0.8
1,950,856	-		IAI47_09250	0.40	-1.0
1,951,003	-		IAI47_09250	0.46	+0.1
1,951,003	-		IAI47_09250	0.46	+0.7
1,951,015	+		IAI47_09250	0.46	-0.8
1,951,016	-		IAI47_09250	0.46	-0.3
1,951,044	+		IAI47_09250	0.47	-1.7
1,951,044	+		IAI47_09250	0.47	+0.8
1,951,044	+		IAI47_09250	0.47	+0.4
1,951,044	+		IAI47_09250	0.47	-0.8
1,951,045	-		IAI47_09250	0.47	+0.2
1,951,045	-		IAI47_09250	0.47	-1.1
1,951,045	-		IAI47_09250	0.47	-1.0
1,951,045	-		IAI47_09250	0.47	-0.1
1,951,067	+		IAI47_09250	0.48	-0.6
1,951,067	+		IAI47_09250	0.48	-2.1
1,951,067	+		IAI47_09250	0.48	-1.2
1,951,067	+		IAI47_09250	0.48	-0.1
1,951,067	+		IAI47_09250	0.48	+0.2
1,951,080	+		IAI47_09250	0.49	-1.2
1,951,081	-		IAI47_09250	0.49	-0.3
1,951,089	+		IAI47_09250	0.49	+1.0
1,951,089	+		IAI47_09250	0.49	-0.8
1,951,089	+		IAI47_09250	0.49	+0.2
1,951,090	-		IAI47_09250	0.49	-0.4
1,951,090	-		IAI47_09250	0.49	+2.0
1,951,090	-		IAI47_09250	0.49	-0.1
1,951,090	-		IAI47_09250	0.49	-0.4
1,951,090	-		IAI47_09250	0.49	-0.2
1,951,092	+		IAI47_09250	0.49	-1.7
1,951,092	+		IAI47_09250	0.49	-0.3
1,951,092	+		IAI47_09250	0.49	+0.2
1,951,092	+		IAI47_09250	0.49	+0.7
1,951,092	+		IAI47_09250	0.49	-1.1
1,951,092	+		IAI47_09250	0.49	-0.4
1,951,092	+		IAI47_09250	0.49	-0.3
1,951,093	-		IAI47_09250	0.49	-2.1
1,951,093	-		IAI47_09250	0.49	-1.3
1,951,093	-		IAI47_09250	0.49	+0.4
1,951,093	-		IAI47_09250	0.49	-0.8
1,951,102	-		IAI47_09250	0.49	-0.6
1,951,179	+		IAI47_09250	0.52	-0.6
1,951,203	+		IAI47_09250	0.53	-0.0
1,951,203	+		IAI47_09250	0.53	+0.2
1,951,204	-		IAI47_09250	0.53	-0.2
1,951,219	+		IAI47_09250	0.54	-1.1
1,951,220	-		IAI47_09250	0.54	-0.8
1,951,220	-		IAI47_09250	0.54	+0.2
1,951,246	+		IAI47_09250	0.55	-0.2
1,951,246	+		IAI47_09250	0.55	+1.8
1,951,247	-		IAI47_09250	0.55	-0.1
1,951,247	-		IAI47_09250	0.55	+0.2
1,951,247	-		IAI47_09250	0.55	+0.0
1,951,247	-		IAI47_09250	0.55	+4.3
1,951,247	-		IAI47_09250	0.55	-0.3
1,951,267	-		IAI47_09250	0.55	-0.5
1,951,296	+		IAI47_09250	0.57	+0.5
1,951,296	+		IAI47_09250	0.57	-0.6
1,951,303	-		IAI47_09250	0.57	-0.8
1,951,316	+		IAI47_09250	0.57	-0.3
1,951,401	+		IAI47_09250	0.60	+0.2
1,951,402	-		IAI47_09250	0.61	-0.3
1,951,416	+		IAI47_09250	0.61	-0.0
1,951,416	+		IAI47_09250	0.61	-0.7
1,951,452	-		IAI47_09250	0.62	-1.1
1,951,456	+		IAI47_09250	0.63	-1.1
1,951,456	+		IAI47_09250	0.63	+1.2
1,951,456	+		IAI47_09250	0.63	+0.6
1,951,457	-		IAI47_09250	0.63	-2.4
1,951,471	-		IAI47_09250	0.63	-0.4
1,951,473	+		IAI47_09250	0.63	-1.1
1,951,473	+		IAI47_09250	0.63	-1.8
1,951,473	+		IAI47_09250	0.63	+1.3
1,951,474	-		IAI47_09250	0.63	+0.5
1,951,531	+		IAI47_09250	0.65	+0.4
1,951,531	+		IAI47_09250	0.65	+0.4
1,951,531	+		IAI47_09250	0.65	+1.1
1,951,532	-		IAI47_09250	0.65	+0.6
1,951,532	-		IAI47_09250	0.65	-0.0
1,951,542	+		IAI47_09250	0.66	-0.7
1,951,542	+		IAI47_09250	0.66	-1.1
1,951,542	+		IAI47_09250	0.66	-0.5
1,951,542	+		IAI47_09250	0.66	+0.4
1,951,543	-		IAI47_09250	0.66	-0.8
1,951,587	+		IAI47_09250	0.67	-1.8
1,951,612	+		IAI47_09250	0.68	-0.5
1,951,675	+		IAI47_09250	0.71	-0.7
1,951,675	+		IAI47_09250	0.71	+0.1
1,951,676	-		IAI47_09250	0.71	-0.6
1,951,676	-		IAI47_09250	0.71	-1.4
1,951,676	-		IAI47_09250	0.71	-1.8
1,951,676	-		IAI47_09250	0.71	-0.8
1,951,676	-		IAI47_09250	0.71	-0.2
1,951,699	+		IAI47_09250	0.72	+1.9
1,951,699	+		IAI47_09250	0.72	+0.2
1,951,699	+		IAI47_09250	0.72	+0.6
1,951,699	+		IAI47_09250	0.72	+0.4
1,951,699	+		IAI47_09250	0.72	+2.2
1,951,699	+		IAI47_09250	0.72	-0.5
1,951,699	+		IAI47_09250	0.72	-1.6
1,951,700	-		IAI47_09250	0.72	-0.7
1,951,700	-		IAI47_09250	0.72	+0.2
1,951,700	-		IAI47_09250	0.72	-0.8
1,951,700	-		IAI47_09250	0.72	+1.6
1,951,701	+		IAI47_09250	0.72	+1.2
1,951,701	+		IAI47_09250	0.72	+0.5
1,951,702	-		IAI47_09250	0.72	+0.2
1,951,729	-		IAI47_09250	0.73	-0.4
1,951,729	-		IAI47_09250	0.73	+0.2
1,951,729	-		IAI47_09250	0.73	-0.8
1,951,743	+		IAI47_09250	0.73	-1.1
1,951,743	+		IAI47_09250	0.73	+0.8
1,951,744	-		IAI47_09250	0.73	-1.4
1,951,782	+		IAI47_09250	0.75	-0.4
1,951,782	+		IAI47_09250	0.75	-0.7
1,951,782	+		IAI47_09250	0.75	+0.2
1,951,782	+		IAI47_09250	0.75	+0.8
1,951,783	-		IAI47_09250	0.75	-2.4
1,951,783	-		IAI47_09250	0.75	-0.4
1,951,811	+		IAI47_09250	0.76	+0.7
1,951,812	+		IAI47_09250	0.76	-1.4
1,951,812	+		IAI47_09250	0.76	-0.2
1,951,812	+		IAI47_09250	0.76	-1.3
1,951,812	+		IAI47_09250	0.76	-0.8
1,951,812	+		IAI47_09250	0.76	+0.2
1,951,812	+		IAI47_09250	0.76	+0.2
1,951,858	+		IAI47_09250	0.78	-0.2
1,951,858	+		IAI47_09250	0.78	-0.5
1,951,859	-		IAI47_09250	0.78	-0.8
1,951,859	-		IAI47_09250	0.78	+0.8
1,951,894	-		IAI47_09250	0.79	+0.2
1,951,901	-		IAI47_09250	0.79	+0.2
1,951,997	-		IAI47_09250	0.83	-1.3
1,951,998	+		IAI47_09250	0.83	-0.4
1,951,998	+		IAI47_09250	0.83	-0.4
1,951,999	-		IAI47_09250	0.83	-0.6
1,951,999	-		IAI47_09250	0.83	+0.6
1,952,031	+		IAI47_09250	0.84	-0.6
1,952,031	+		IAI47_09250	0.84	-0.2
1,952,032	-		IAI47_09250	0.84	-1.0
1,952,032	-		IAI47_09250	0.84	+0.8
1,952,035	+		IAI47_09250	0.84	+0.2
1,952,035	+		IAI47_09250	0.84	+0.3
1,952,035	+		IAI47_09250	0.84	+0.6
1,952,036	-		IAI47_09250	0.84	-0.6
1,952,036	-		IAI47_09250	0.84	+0.7
1,952,053	+		IAI47_09250	0.85	-0.6
1,952,067	+		IAI47_09250	0.85	+0.8
1,952,067	+		IAI47_09250	0.85	-1.0
1,952,068	-		IAI47_09250	0.85	-2.1
1,952,068	-		IAI47_09250	0.85	-1.0
1,952,068	-		IAI47_09250	0.85	-2.4
1,952,068	-		IAI47_09250	0.85	-0.4
1,952,070	-		IAI47_09250	0.85	-2.1
1,952,098	+		IAI47_09250	0.86	+0.3
1,952,098	+		IAI47_09250	0.86	-1.2
1,952,098	+		IAI47_09250	0.86	-0.6
1,952,099	-		IAI47_09250	0.87	-1.2
1,952,184	+		IAI47_09250	0.90	+0.1
1,952,280	+				-2.4
1,952,280	+				-0.1
1,952,280	+				-1.6
1,952,280	+				+0.4
1,952,280	+				-0.1
1,952,280	+				+2.4
1,952,281	-				+1.8
1,952,281	-				-1.5
1,952,281	-				+1.2
1,952,355	+				-1.0
1,952,389	-				-0.1
1,952,407	+				-0.6
1,952,407	+				+1.8
1,952,407	+				-1.2
1,952,407	+				-1.2
1,952,407	+				-1.8
1,952,407	+				-1.4
1,952,407	+				+0.2
1,952,408	-				+1.0
1,952,408	-				-0.6
1,952,408	-				-0.8
1,952,408	-				-1.2
1,952,408	-				-1.4
1,952,410	+				-2.1
1,952,410	+				-0.9
1,952,410	+				-2.0
1,952,411	-				+0.7
1,952,415	+				-2.0
1,952,434	+				-0.8
1,952,434	+				-0.2
1,952,434	+				-0.6
1,952,434	+				+0.4
1,952,435	-				-1.4
1,952,435	-				-0.1
1,952,435	-				+0.8
1,952,435	-				-1.8
1,952,435	-				-1.3
1,952,435	-				-0.8
1,952,435	-				-0.5
1,952,435	-				+0.8
1,952,435	-				-0.1
1,952,448	+				-1.3
1,952,449	-				+0.5
1,952,449	-				+1.0
1,952,449	-				-0.8
1,953,129	-				-0.5
1,953,218	+				-1.2
1,953,247	+				-0.5
1,953,274	-				-1.0
1,953,291	+				-0.0
1,953,319	+				-0.5
1,953,319	+				-1.7
1,953,319	+				-1.4
1,953,319	+				-0.5
1,953,346	+				-0.9