Strain Fitness in Pantoea sp. MT58 around IAI47_08195

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,728,704	-				-1.4
1,728,908	+				-0.4
1,728,908	+				+0.2
1,728,929	+				-0.1
1,728,974	-				-0.5
1,728,996	+				+0.2
1,728,996	+				-0.3
1,728,997	-				+0.2
1,728,997	-				+0.2
1,729,062	+				-0.3
1,729,063	-				-0.5
1,729,077	-				-0.3
1,729,077	-				+0.8
1,729,089	+				-0.2
1,729,090	-				-0.0
1,729,090	-				-0.3
1,729,111	+				-0.5
1,729,118	+				+0.7
1,729,119	-				-0.6
1,729,122	+				-1.2
1,729,122	+				-0.6
1,729,123	-				+1.2
1,729,123	-				+0.7
1,729,123	-				+1.4
1,729,123	-				+1.2
1,729,165	+				+0.2
1,729,165	+				+0.2
1,729,166	-				+1.2
1,729,166	-				-2.2
1,729,179	+				+1.0
1,729,180	-				+0.2
1,729,192	+				+0.4
1,729,192	+				-0.1
1,729,192	+				-0.8
1,729,192	+				-1.6
1,729,192	+				+0.7
1,729,487	+				+1.5
1,729,487	+				-1.5
1,729,487	+				+2.8
1,729,601	-				-1.0
1,729,639	-				-2.6
1,729,656	+				-2.8
1,729,656	+				-2.8
1,729,657	-				-3.0
1,729,681	+				-1.4
1,729,681	+				+0.2
1,729,682	-				-2.8
1,729,802	+				-1.7
1,729,802	+				-0.4
1,729,803	-				-1.4
1,729,803	-				-3.6
1,729,803	-				-2.2
1,729,803	-				-2.1
1,729,829	-				-0.4
1,729,852	-				-3.6
1,729,957	+				-0.6
1,729,958	-				-2.4
1,730,022	+		IAI47_08195	0.10	-1.4
1,730,022	+		IAI47_08195	0.10	-0.6
1,730,023	-		IAI47_08195	0.10	-1.8
1,730,023	-		IAI47_08195	0.10	+0.2
1,730,082	-		IAI47_08195	0.12	-0.8
1,730,097	+		IAI47_08195	0.12	-2.8
1,730,098	-		IAI47_08195	0.12	-2.4
1,730,112	+		IAI47_08195	0.13	-3.0
1,730,112	+		IAI47_08195	0.13	-1.6
1,730,113	-		IAI47_08195	0.13	-2.6
1,730,113	-		IAI47_08195	0.13	-2.3
1,730,118	+		IAI47_08195	0.13	-3.3
1,730,255	+		IAI47_08195	0.16	-2.5
1,730,255	+		IAI47_08195	0.16	-1.8
1,730,256	-		IAI47_08195	0.16	-2.5
1,730,256	-		IAI47_08195	0.16	-2.3
1,730,256	-		IAI47_08195	0.16	-2.2
1,730,256	-		IAI47_08195	0.16	-1.3
1,730,351	+		IAI47_08195	0.19	-2.6
1,730,351	+		IAI47_08195	0.19	-0.8
1,730,351	+		IAI47_08195	0.19	+0.2
1,730,351	+		IAI47_08195	0.19	-2.1
1,730,352	-		IAI47_08195	0.19	-0.8
1,730,352	-		IAI47_08195	0.19	-2.2
1,730,352	-		IAI47_08195	0.19	-2.1
1,730,410	-		IAI47_08195	0.20	-2.9
1,730,520	+		IAI47_08195	0.23	-0.4
1,730,578	-		IAI47_08195	0.24	-1.7
1,730,578	-		IAI47_08195	0.24	-2.5
1,730,622	-		IAI47_08195	0.26	-2.1
1,730,641	-		IAI47_08195	0.26	-0.8
1,730,641	-		IAI47_08195	0.26	-1.6
1,730,655	+		IAI47_08195	0.26	-2.8
1,730,655	+		IAI47_08195	0.26	-1.5
1,730,656	-		IAI47_08195	0.26	-0.8
1,730,772	+		IAI47_08195	0.29	-1.6
1,730,773	-		IAI47_08195	0.29	-1.4
1,730,773	-		IAI47_08195	0.29	+0.7
1,730,773	-		IAI47_08195	0.29	-1.7
1,730,773	-		IAI47_08195	0.29	-1.8
1,730,773	-		IAI47_08195	0.29	+0.2
1,731,246	+		IAI47_08195	0.41	-0.8
1,731,246	+		IAI47_08195	0.41	-0.8
1,731,247	-		IAI47_08195	0.41	-2.3
1,731,247	-		IAI47_08195	0.41	-3.3
1,731,247	-		IAI47_08195	0.41	-1.8
1,731,303	+		IAI47_08195	0.43	-2.4
1,731,304	-		IAI47_08195	0.43	-2.2
1,731,311	+		IAI47_08195	0.43	-2.3
1,731,312	-		IAI47_08195	0.43	-1.0
1,731,314	+		IAI47_08195	0.43	-1.8
1,731,314	+		IAI47_08195	0.43	-3.5
1,731,314	+		IAI47_08195	0.43	-1.0
1,731,314	+		IAI47_08195	0.43	-2.8
1,731,314	+		IAI47_08195	0.43	-0.8
1,731,314	+		IAI47_08195	0.43	-0.8
1,731,315	-		IAI47_08195	0.43	-1.4
1,731,315	-		IAI47_08195	0.43	-2.8
1,731,315	-		IAI47_08195	0.43	-2.6
1,731,315	-		IAI47_08195	0.43	-1.6
1,731,315	-		IAI47_08195	0.43	-2.2
1,731,315	-		IAI47_08195	0.43	-1.8
1,731,318	-		IAI47_08195	0.43	-2.3
1,731,318	-		IAI47_08195	0.43	-2.1
1,731,318	-		IAI47_08195	0.43	-2.4
1,731,318	-		IAI47_08195	0.43	-1.6
1,731,318	-		IAI47_08195	0.43	-2.0
1,731,361	-		IAI47_08195	0.44	-1.6
1,731,361	-		IAI47_08195	0.44	-1.4
1,731,361	-		IAI47_08195	0.44	-0.8
1,731,362	+		IAI47_08195	0.44	-1.4
1,731,362	+		IAI47_08195	0.44	-0.6
1,731,362	+		IAI47_08195	0.44	-3.1
1,731,362	+		IAI47_08195	0.44	-2.8
1,731,363	-		IAI47_08195	0.44	+1.2
1,731,363	-		IAI47_08195	0.44	-0.8
1,731,363	-		IAI47_08195	0.44	-1.8
1,731,363	-		IAI47_08195	0.44	-0.8
1,731,390	+		IAI47_08195	0.45	-2.8
1,731,531	+		IAI47_08195	0.49	-1.8
1,731,583	-		IAI47_08195	0.50	-2.8
1,731,711	+		IAI47_08195	0.53	-2.4
1,731,734	+		IAI47_08195	0.54	-0.3
1,731,734	+		IAI47_08195	0.54	-2.5
1,731,734	+		IAI47_08195	0.54	-0.3
1,731,735	-		IAI47_08195	0.54	-2.4
1,731,853	-		IAI47_08195	0.57	-2.8
1,731,853	-		IAI47_08195	0.57	-3.3
1,731,853	-		IAI47_08195	0.57	-2.2
1,731,861	+		IAI47_08195	0.57	-2.6
1,731,861	+		IAI47_08195	0.57	-1.2
1,731,862	-		IAI47_08195	0.57	-0.4
1,731,862	-		IAI47_08195	0.57	-2.2
1,731,862	-		IAI47_08195	0.57	-3.2
1,731,868	-		IAI47_08195	0.57	-3.0
1,731,914	+		IAI47_08195	0.58	-0.4
1,731,914	+		IAI47_08195	0.58	-3.4
1,731,915	-		IAI47_08195	0.58	-0.8
1,731,915	-		IAI47_08195	0.58	+0.2
1,731,950	+		IAI47_08195	0.59	-2.6
1,731,950	+		IAI47_08195	0.59	-2.4
1,731,950	+		IAI47_08195	0.59	-1.4
1,731,950	+		IAI47_08195	0.59	-2.9
1,731,950	+		IAI47_08195	0.59	-1.8
1,731,950	+		IAI47_08195	0.59	-1.8
1,731,950	+		IAI47_08195	0.59	-1.2
1,731,951	-		IAI47_08195	0.59	-0.6
1,731,951	-		IAI47_08195	0.59	-3.0
1,731,951	-		IAI47_08195	0.59	-1.8
1,731,954	+		IAI47_08195	0.59	-1.8
1,731,954	+		IAI47_08195	0.59	-1.6
1,731,954	+		IAI47_08195	0.59	-1.2
1,731,954	+		IAI47_08195	0.59	-1.8
1,731,954	+		IAI47_08195	0.59	-0.4
1,731,955	-		IAI47_08195	0.59	-1.4
1,731,955	-		IAI47_08195	0.59	-2.3
1,731,969	+		IAI47_08195	0.60	-2.4
1,731,969	+		IAI47_08195	0.60	-3.8
1,731,970	-		IAI47_08195	0.60	-0.4
1,731,970	-		IAI47_08195	0.60	-2.7
1,732,007	+		IAI47_08195	0.61	-1.6
1,732,007	+		IAI47_08195	0.61	-1.4
1,732,007	+		IAI47_08195	0.61	-1.0
1,732,007	+		IAI47_08195	0.61	-1.4
1,732,008	-		IAI47_08195	0.61	-1.3
1,732,008	-		IAI47_08195	0.61	-3.0
1,732,008	-		IAI47_08195	0.61	-1.7
1,732,008	-		IAI47_08195	0.61	-0.8
1,732,008	-		IAI47_08195	0.61	-0.8
1,732,008	-		IAI47_08195	0.61	-2.8
1,732,008	-		IAI47_08195	0.61	-0.8
1,732,046	+		IAI47_08195	0.62	-1.3
1,732,047	-		IAI47_08195	0.62	-2.8
1,732,047	-		IAI47_08195	0.62	-3.0
1,732,061	+		IAI47_08195	0.62	-2.0
1,732,061	+		IAI47_08195	0.62	-2.3
1,732,061	+		IAI47_08195	0.62	-1.4
1,732,062	-		IAI47_08195	0.62	+0.2
1,732,062	-		IAI47_08195	0.62	-2.9
1,732,062	-		IAI47_08195	0.62	-1.8
1,732,062	-		IAI47_08195	0.62	-3.6
1,732,062	-		IAI47_08195	0.62	-0.8
1,732,062	-		IAI47_08195	0.62	-2.2
1,732,062	-		IAI47_08195	0.62	-0.8
1,732,062	-		IAI47_08195	0.62	-2.2
1,732,062	-		IAI47_08195	0.62	-2.4
1,732,065	+		IAI47_08195	0.62	-2.2
1,732,066	-		IAI47_08195	0.62	-2.5
1,732,066	-		IAI47_08195	0.62	-3.4
1,732,066	-		IAI47_08195	0.62	-2.6
1,732,127	+		IAI47_08195	0.64	-0.8
1,732,127	+		IAI47_08195	0.64	-0.2
1,732,127	+		IAI47_08195	0.64	-2.6
1,732,128	-		IAI47_08195	0.64	-1.3
1,732,172	+		IAI47_08195	0.65	-2.6
1,732,172	+		IAI47_08195	0.65	-1.4
1,732,172	+		IAI47_08195	0.65	-2.4
1,732,172	+		IAI47_08195	0.65	+0.2
1,732,172	+		IAI47_08195	0.65	-0.3
1,732,172	+		IAI47_08195	0.65	-1.2
1,732,172	+		IAI47_08195	0.65	-3.0
1,732,172	+		IAI47_08195	0.65	+0.6
1,732,173	-		IAI47_08195	0.65	-2.2
1,732,173	-		IAI47_08195	0.65	-2.8
1,732,173	-		IAI47_08195	0.65	-0.8
1,732,173	-		IAI47_08195	0.65	-2.3
1,732,173	-		IAI47_08195	0.65	-0.8
1,732,173	-		IAI47_08195	0.65	-2.2
1,732,173	-		IAI47_08195	0.65	-1.7
1,732,173	-		IAI47_08195	0.65	-2.2
1,732,177	+		IAI47_08195	0.65	-1.6
1,732,180	-		IAI47_08195	0.65	-2.1
1,732,187	+		IAI47_08195	0.65	-2.4
1,732,188	-		IAI47_08195	0.65	-3.7
1,732,200	+		IAI47_08195	0.66	-2.2
1,732,200	+		IAI47_08195	0.66	-2.4
1,732,201	-		IAI47_08195	0.66	-3.7
1,732,201	-		IAI47_08195	0.66	+0.2
1,732,203	-		IAI47_08195	0.66	-2.3
1,732,353	-		IAI47_08195	0.69	+0.2
1,732,353	-		IAI47_08195	0.69	-2.0
1,732,422	+		IAI47_08195	0.71	-2.6
1,732,422	+		IAI47_08195	0.71	-0.4
1,732,423	-		IAI47_08195	0.71	-2.2
1,732,464	+		IAI47_08195	0.72	-3.0
1,732,465	-		IAI47_08195	0.72	-2.0
1,732,481	+		IAI47_08195	0.73	+0.2
1,732,482	-		IAI47_08195	0.73	-2.0
1,732,482	-		IAI47_08195	0.73	-1.8
1,732,515	+		IAI47_08195	0.74	+1.5
1,732,515	+		IAI47_08195	0.74	-1.4
1,732,515	+		IAI47_08195	0.74	-2.8
1,732,516	-		IAI47_08195	0.74	-3.4
1,732,516	-		IAI47_08195	0.74	-3.9
1,732,544	+		IAI47_08195	0.74	-2.8
1,732,545	-		IAI47_08195	0.74	-1.6
1,732,545	-		IAI47_08195	0.74	-0.8
1,732,559	+		IAI47_08195	0.75	-2.2
1,732,607	+		IAI47_08195	0.76	-3.2
1,732,607	+		IAI47_08195	0.76	-2.2
1,732,607	+		IAI47_08195	0.76	-0.1
1,732,608	-		IAI47_08195	0.76	-0.8
1,732,608	-		IAI47_08195	0.76	+0.2
1,732,632	+		IAI47_08195	0.76	-1.2
1,732,658	+		IAI47_08195	0.77	-1.2
1,732,659	-		IAI47_08195	0.77	-2.8
1,732,659	-		IAI47_08195	0.77	-2.8
1,732,659	-		IAI47_08195	0.77	-1.4
1,732,670	+		IAI47_08195	0.77	+0.5
1,732,670	+		IAI47_08195	0.77	-1.1
1,732,670	+		IAI47_08195	0.77	-1.2
1,732,671	-		IAI47_08195	0.77	-1.3
1,732,692	+		IAI47_08195	0.78	-1.8
1,732,692	+		IAI47_08195	0.78	-2.5
1,732,692	+		IAI47_08195	0.78	-2.9
1,732,692	+		IAI47_08195	0.78	-1.4
1,732,693	-		IAI47_08195	0.78	-0.4
1,732,693	-		IAI47_08195	0.78	-1.4
1,732,693	-		IAI47_08195	0.78	-0.2
1,732,693	-		IAI47_08195	0.78	-1.7
1,732,713	+		IAI47_08195	0.79	-3.2
1,732,713	+		IAI47_08195	0.79	-2.0
1,732,714	-		IAI47_08195	0.79	-1.4
1,732,718	+		IAI47_08195	0.79	-1.8
1,732,718	+		IAI47_08195	0.79	-2.4
1,732,718	+		IAI47_08195	0.79	-3.3
1,732,718	+		IAI47_08195	0.79	-1.2
1,732,718	+		IAI47_08195	0.79	-3.2
1,732,719	-		IAI47_08195	0.79	-2.4
1,732,719	-		IAI47_08195	0.79	-2.3
1,732,719	-		IAI47_08195	0.79	-2.0
1,732,719	-		IAI47_08195	0.79	+0.2
1,732,719	-		IAI47_08195	0.79	-0.8
1,732,821	+		IAI47_08195	0.81	-2.2
1,732,821	+		IAI47_08195	0.81	-1.4
1,732,821	+		IAI47_08195	0.81	-2.7
1,732,822	-		IAI47_08195	0.81	-2.4
1,732,863	+		IAI47_08195	0.82	-2.3
1,732,864	-		IAI47_08195	0.82	+0.8
1,732,864	-		IAI47_08195	0.82	-2.0
1,733,046	+		IAI47_08195	0.87	-1.6
1,733,046	+		IAI47_08195	0.87	-3.0
1,733,047	-		IAI47_08195	0.87	-1.4
1,733,047	-		IAI47_08195	0.87	-2.2
1,733,047	-		IAI47_08195	0.87	-0.8
1,733,081	-		IAI47_08195	0.88	-0.8
1,733,183	+				-2.2
1,733,183	+				-4.1
1,733,312	-				-1.4
1,733,441	+				-2.2
1,733,441	+				-0.2
1,733,441	+				-1.8
1,733,441	+				-2.3
1,733,442	-				-0.8
1,733,442	-				-2.2
1,733,442	-				-2.3
1,733,442	-				-2.4
1,733,442	-				-2.2
1,733,445	+				-2.6
1,733,445	+				-1.8
1,733,445	+				-1.4
1,733,445	+				-0.8
1,733,446	-				-2.5
1,733,446	-				-1.4
1,733,446	-				-1.2
1,733,446	-				-2.6
1,733,536	+				-0.8
1,733,536	+				-0.6
1,733,537	-				-1.8
1,733,553	+				-2.2
1,733,554	-				-0.8
1,733,577	+				-2.5
1,733,577	+				-1.0
1,733,577	+				-2.6
1,733,578	-				-2.1
1,733,605	+				-2.7
1,733,606	-				-2.6
1,733,606	-				-2.1
1,733,612	+				-1.6
1,733,612	+				-1.7
1,733,613	-				-2.0
1,733,653	+				+0.6
1,733,663	+				+0.2
1,733,663	+				-1.6
1,733,664	-				+0.5
1,733,664	-				+0.6
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