Strain Fitness in Pantoea sp. MT58 around IAI47_07585

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,603,787	+		IAI47_07580	0.62	+1.4
1,603,787	+		IAI47_07580	0.62	+1.2
1,603,787	+		IAI47_07580	0.62	+0.5
1,603,787	+		IAI47_07580	0.62	-0.0
1,603,787	+		IAI47_07580	0.62	-0.2
1,603,788	-		IAI47_07580	0.62	-0.5
1,603,788	-		IAI47_07580	0.62	+0.6
1,603,788	-		IAI47_07580	0.62	-0.4
1,603,788	-		IAI47_07580	0.62	+2.8
1,603,791	+		IAI47_07580	0.63	-1.2
1,603,792	-		IAI47_07580	0.63	-0.0
1,603,802	+		IAI47_07580	0.63	+0.5
1,603,803	-		IAI47_07580	0.63	-0.4
1,603,870	+		IAI47_07580	0.68	+0.2
1,603,870	+		IAI47_07580	0.68	+1.0
1,603,870	+		IAI47_07580	0.68	+0.2
1,603,870	+		IAI47_07580	0.68	+1.2
1,603,871	-		IAI47_07580	0.68	-0.9
1,603,871	-		IAI47_07580	0.68	+1.5
1,603,871	-		IAI47_07580	0.68	-0.3
1,603,871	-		IAI47_07580	0.68	-0.6
1,603,871	-		IAI47_07580	0.68	+0.4
1,603,871	-		IAI47_07580	0.68	+0.7
1,604,021	+		IAI47_07580	0.78	-1.1
1,604,027	+		IAI47_07580	0.79	+0.2
1,604,070	-		IAI47_07580	0.82	+0.3
1,604,070	-		IAI47_07580	0.82	-0.8
1,604,070	-		IAI47_07580	0.82	+0.8
1,604,070	-		IAI47_07580	0.82	-1.2
1,604,118	+		IAI47_07580	0.85	+1.5
1,604,119	-		IAI47_07580	0.85	+0.2
1,604,133	+		IAI47_07580	0.86	-1.1
1,604,133	-		IAI47_07580	0.86	-1.9
1,604,142	-		IAI47_07580	0.87	+1.0
1,604,205	-				-0.2
1,604,207	+				-0.6
1,604,216	+				-0.4
1,604,216	+				-0.4
1,604,264	-				-0.4
1,604,264	-				+0.0
1,604,298	+				+0.1
1,604,298	+				+0.2
1,604,298	+				-1.1
1,604,298	+				-0.4
1,604,299	-				+0.4
1,604,335	-				-0.2
1,604,338	+				-2.2
1,604,338	+				+0.2
1,604,339	-				-0.6
1,604,339	-				-0.0
1,604,339	-				+0.5
1,604,345	+				+1.3
1,604,345	+				-0.8
1,604,421	+				-0.7
1,604,425	-				+1.4
1,604,517	+				+0.1
1,604,518	-				+0.8
1,604,689	-				-0.9
1,604,700	+				+0.0
1,604,705	+				-0.4
1,604,706	-				-0.1
1,604,743	-				+0.9
1,604,743	-				-0.0
1,604,787	+				-1.0
1,604,828	+				-1.1
1,604,828	+				+1.4
1,604,828	+				-0.2
1,604,828	+				+0.6
1,604,829	-				-0.5
1,604,830	+				+0.2
1,604,831	-				+0.2
1,604,831	-				-0.2
1,604,831	-				-1.1
1,604,875	-				+1.9
1,604,875	-				-0.2
1,604,900	+				-0.8
1,604,901	-				+1.2
1,604,901	-				-0.8
1,604,901	-				-0.0
1,605,018	+		IAI47_07585	0.16	+1.8
1,605,019	-		IAI47_07585	0.16	+1.8
1,605,146	+		IAI47_07585	0.25	+0.3
1,605,146	+		IAI47_07585	0.25	-0.4
1,605,147	-		IAI47_07585	0.25	+0.2
1,605,147	-		IAI47_07585	0.25	-0.2
1,605,167	+		IAI47_07585	0.26	+0.0
1,605,168	-		IAI47_07585	0.26	+2.2
1,605,168	-		IAI47_07585	0.26	-0.6
1,605,168	-		IAI47_07585	0.26	+0.3
1,605,168	-		IAI47_07585	0.26	+0.7
1,605,227	+		IAI47_07585	0.30	+0.2
1,605,227	+		IAI47_07585	0.30	-0.2
1,605,227	+		IAI47_07585	0.30	-0.6
1,605,227	+		IAI47_07585	0.30	+0.5
1,605,227	+		IAI47_07585	0.30	-0.2
1,605,227	+		IAI47_07585	0.30	-0.4
1,605,228	-		IAI47_07585	0.30	+0.3
1,605,228	-		IAI47_07585	0.30	+0.6
1,605,228	-		IAI47_07585	0.30	-0.5
1,605,228	-		IAI47_07585	0.30	-0.6
1,605,228	-		IAI47_07585	0.30	-0.3
1,605,228	-		IAI47_07585	0.30	-0.6
1,605,228	-		IAI47_07585	0.30	-0.2
1,605,228	-		IAI47_07585	0.30	+1.0
1,605,228	-		IAI47_07585	0.30	+0.3
1,605,409	+		IAI47_07585	0.43	+0.4
1,605,410	-		IAI47_07585	0.43	-0.3
1,605,410	-		IAI47_07585	0.43	-0.0
1,605,535	+		IAI47_07585	0.51	-1.2
1,605,536	-		IAI47_07585	0.51	-0.2
1,605,536	-		IAI47_07585	0.51	-0.2
1,605,536	-		IAI47_07585	0.51	+1.9
1,605,582	+		IAI47_07585	0.54	+0.2
1,605,582	+		IAI47_07585	0.54	-0.4
1,605,679	+		IAI47_07585	0.61	-0.6
1,605,679	+		IAI47_07585	0.61	-0.3
1,605,679	+		IAI47_07585	0.61	+0.2
1,605,680	-		IAI47_07585	0.61	-0.3
1,605,680	-		IAI47_07585	0.61	-0.4
1,605,684	+		IAI47_07585	0.61	-0.2
1,605,684	+		IAI47_07585	0.61	-1.2
1,605,684	+		IAI47_07585	0.61	+0.8
1,605,694	+		IAI47_07585	0.62	-0.1
1,605,694	+		IAI47_07585	0.62	+1.2
1,605,743	-		IAI47_07585	0.65	-0.3
1,605,776	+		IAI47_07585	0.68	+0.1
1,605,981	+		IAI47_07585	0.81	+1.6
1,605,981	+		IAI47_07585	0.81	+0.2
1,605,981	+		IAI47_07585	0.81	-1.1
1,605,982	-		IAI47_07585	0.82	-0.1
1,605,982	-		IAI47_07585	0.82	-0.4
1,606,034	+		IAI47_07585	0.85	-0.1
1,606,034	+		IAI47_07585	0.85	+0.7
1,606,034	+		IAI47_07585	0.85	+0.5
1,606,034	+		IAI47_07585	0.85	-0.5
1,606,034	+		IAI47_07585	0.85	+0.5
1,606,035	-		IAI47_07585	0.85	-0.8
1,606,035	-		IAI47_07585	0.85	+0.2
1,606,035	-		IAI47_07585	0.85	-0.8
1,606,035	-		IAI47_07585	0.85	-0.2
1,606,035	-		IAI47_07585	0.85	-0.2
1,606,035	-		IAI47_07585	0.85	+2.0
1,606,035	-		IAI47_07585	0.85	+0.8
1,606,098	+		IAI47_07585	0.89	-0.9
1,606,098	+		IAI47_07585	0.89	+0.3
1,606,099	-		IAI47_07585	0.90	-0.2
1,606,151	-				-0.0
1,606,186	+				-0.8
1,606,187	-				+0.2
1,606,187	-				+1.2
1,606,236	+				+0.7
1,606,236	+				+0.6
1,606,250	+				-0.2
1,606,278	+				-0.3
1,606,278	+				+0.8
1,606,278	+				-0.8
1,606,278	+				+0.2
1,606,278	+				+1.0
1,606,278	+				-0.6
1,606,279	-				-0.2
1,606,279	-				+0.3
1,606,279	-				+0.3
1,606,279	-				-1.2
1,606,279	-				-0.3
1,606,279	-				+1.4
1,606,279	-				-0.7
1,606,279	-				+0.3
1,606,279	-				-0.2
1,606,279	-				-0.6
1,606,279	-				-3.0
1,606,292	+				+0.2
1,606,292	+				-0.6
1,606,293	-				+0.9
1,606,343	+				+0.2
1,606,406	+		IAI47_07590	0.19	-0.4
1,606,406	+		IAI47_07590	0.19	-0.9
1,606,406	+		IAI47_07590	0.19	+1.0
1,606,407	-		IAI47_07590	0.19	+0.0
1,606,407	-		IAI47_07590	0.19	-0.3
1,606,410	-		IAI47_07590	0.19	+0.2
1,606,461	+		IAI47_07590	0.27	+0.2
1,606,461	+		IAI47_07590	0.27	+1.4
1,606,461	+		IAI47_07590	0.27	+0.2
1,606,462	-		IAI47_07590	0.27	+0.2
1,606,464	+		IAI47_07590	0.27	-0.9
1,606,464	+		IAI47_07590	0.27	-0.6
1,606,464	+		IAI47_07590	0.27	-0.8
1,606,464	+		IAI47_07590	0.27	-0.5
1,606,464	+		IAI47_07590	0.27	+1.3
1,606,464	+		IAI47_07590	0.27	-1.6
1,606,465	-		IAI47_07590	0.28	+0.7
1,606,465	-		IAI47_07590	0.28	+0.2
1,606,541	+		IAI47_07590	0.39	-0.1
1,606,541	+		IAI47_07590	0.39	+2.0
1,606,541	+		IAI47_07590	0.39	+0.3
1,606,542	-		IAI47_07590	0.39	+0.8
1,606,545	+		IAI47_07590	0.39	-0.2
1,606,545	+		IAI47_07590	0.39	+0.4
1,606,546	-		IAI47_07590	0.40	-1.0
1,606,546	-		IAI47_07590	0.40	+0.9
1,606,689	+		IAI47_07590	0.61	+1.0
1,606,689	+		IAI47_07590	0.61	-0.8
1,606,689	+		IAI47_07590	0.61	-0.3
1,606,689	+		IAI47_07590	0.61	-0.1
1,606,722	+		IAI47_07590	0.66	+0.2
1,606,722	+		IAI47_07590	0.66	+0.2
1,606,722	+		IAI47_07590	0.66	-1.4
1,606,722	+		IAI47_07590	0.66	-0.3
1,606,722	+		IAI47_07590	0.66	+1.0
1,606,723	-		IAI47_07590	0.66	+0.1
1,606,723	-		IAI47_07590	0.66	-0.2
1,606,723	-		IAI47_07590	0.66	+0.0
1,606,723	-		IAI47_07590	0.66	-1.5
1,606,724	+		IAI47_07590	0.66	+1.2
1,606,724	+		IAI47_07590	0.66	-0.2
1,606,725	-		IAI47_07590	0.66	-0.3
1,606,725	-		IAI47_07590	0.66	-0.6
1,606,725	-		IAI47_07590	0.66	+1.5
1,606,725	-		IAI47_07590	0.66	-0.0
1,606,749	+		IAI47_07590	0.70	-0.6
1,606,749	+		IAI47_07590	0.70	-1.0
1,606,749	+		IAI47_07590	0.70	-1.4
1,606,749	+		IAI47_07590	0.70	-0.8
1,606,750	-		IAI47_07590	0.70	-0.2
1,606,750	-		IAI47_07590	0.70	+0.8
1,606,760	+		IAI47_07590	0.72	+2.0
1,606,761	-		IAI47_07590	0.72	-0.3
1,606,812	+		IAI47_07590	0.79	+0.2
1,606,890	+				-0.0
1,606,891	-				-0.6
1,606,893	+				-0.1
1,606,893	+				-0.4
1,606,893	+				+0.2
1,606,893	+				-0.1
1,606,894	-				-0.6
1,606,899	+				-0.3
1,606,899	+				-3.2
1,606,900	-				-0.1
1,606,900	-				+0.2
1,606,917	-				+0.8
1,607,183	+		IAI47_07595	0.17	-1.6
1,607,242	+		IAI47_07595	0.22	-0.5
1,607,243	-		IAI47_07595	0.22	+0.6
1,607,243	-		IAI47_07595	0.22	+0.4