Strain Fitness in Pantoea sp. MT58 around IAI47_07580

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,601,908	-		IAI47_07575	0.15	-0.2
1,601,999	+		IAI47_07575	0.25	+0.5
1,601,999	+		IAI47_07575	0.25	-0.4
1,602,000	-		IAI47_07575	0.25	-0.4
1,602,000	-		IAI47_07575	0.25	-1.8
1,602,022	-		IAI47_07575	0.27	+0.2
1,602,022	-		IAI47_07575	0.27	-0.5
1,602,022	-				+0.3
1,602,022	-		IAI47_07575	0.27	+0.2
1,602,049	-		IAI47_07575	0.30	-0.2
1,602,063	+		IAI47_07575	0.31	-0.2
1,602,063	+		IAI47_07575	0.31	+0.2
1,602,063	+		IAI47_07575	0.31	-0.1
1,602,063	+		IAI47_07575	0.31	-1.6
1,602,064	-		IAI47_07575	0.32	+0.6
1,602,064	-		IAI47_07575	0.32	-0.3
1,602,064	-		IAI47_07575	0.32	-0.3
1,602,077	-		IAI47_07575	0.33	-0.1
1,602,077	-		IAI47_07575	0.33	+0.3
1,602,077	-		IAI47_07575	0.33	-0.7
1,602,096	+		IAI47_07575	0.35	+1.2
1,602,097	-		IAI47_07575	0.35	-0.1
1,602,097	-		IAI47_07575	0.35	+1.8
1,602,192	+		IAI47_07575	0.45	+0.4
1,602,192	+		IAI47_07575	0.45	-0.1
1,602,192	+		IAI47_07575	0.45	+1.0
1,602,197	+		IAI47_07575	0.45	+0.3
1,602,222	+		IAI47_07575	0.48	+0.2
1,602,222	+		IAI47_07575	0.48	+0.5
1,602,222	+		IAI47_07575	0.48	-0.5
1,602,222	+		IAI47_07575	0.48	+0.7
1,602,222	+		IAI47_07575	0.48	+0.2
1,602,223	-		IAI47_07575	0.48	-0.5
1,602,223	-		IAI47_07575	0.48	+0.6
1,602,321	+		IAI47_07575	0.58	-0.6
1,602,322	-		IAI47_07575	0.58	+0.0
1,602,322	-		IAI47_07575	0.58	+0.2
1,602,322	-		IAI47_07575	0.58	+0.4
1,602,322	-		IAI47_07575	0.58	+2.0
1,602,350	-		IAI47_07575	0.61	-0.7
1,602,447	-		IAI47_07575	0.71	-0.4
1,602,447	-		IAI47_07575	0.71	-0.2
1,602,457	+		IAI47_07575	0.72	+0.7
1,602,458	-		IAI47_07575	0.73	-0.3
1,602,461	+		IAI47_07575	0.73	-0.8
1,602,461	+		IAI47_07575	0.73	-0.2
1,602,462	-		IAI47_07575	0.73	+0.2
1,602,569	+		IAI47_07575	0.84	+0.2
1,602,570	-		IAI47_07575	0.84	+2.5
1,602,570	-		IAI47_07575	0.84	+0.2
1,602,603	+		IAI47_07575	0.88	-0.1
1,602,603	+		IAI47_07575	0.88	-0.4
1,602,604	-		IAI47_07575	0.88	+0.2
1,602,604	-		IAI47_07575	0.88	+0.2
1,602,604	-		IAI47_07575	0.88	+1.2
1,602,604	-		IAI47_07575	0.88	-0.5
1,602,607	+		IAI47_07575	0.88	+0.2
1,602,607	+		IAI47_07575	0.88	+0.2
1,602,607	+		IAI47_07575	0.88	-0.6
1,602,607	+		IAI47_07575	0.88	+1.2
1,602,607	+		IAI47_07575	0.88	-1.2
1,602,607	+		IAI47_07575	0.88	-0.4
1,602,608	-		IAI47_07575	0.88	-1.1
1,602,608	-		IAI47_07575	0.88	+0.8
1,602,608	-		IAI47_07575	0.88	-0.6
1,602,608	-		IAI47_07575	0.88	-0.8
1,602,679	+				+0.2
1,602,680	-				-0.2
1,602,718	+				+0.9
1,602,719	-				+0.0
1,602,719	-				+1.3
1,602,753	+				+0.2
1,602,764	+				+0.2
1,602,846	+				-0.3
1,602,857	+				+0.9
1,602,857	+				-0.4
1,602,858	-				-0.4
1,602,858	-				+0.2
1,602,878	+				+3.2
1,602,878	+				+0.0
1,602,878	+				+0.5
1,602,878	+				-0.8
1,602,878	+				+0.2
1,602,878	+				+1.0
1,602,878	+				-1.2
1,602,878	+				+1.3
1,602,878	+				-0.1
1,602,878	+				-1.2
1,602,878	+				-0.8
1,602,878	+				+0.2
1,602,878	+				+0.6
1,602,879	-				-0.1
1,602,879	-				-0.2
1,602,879	-				-1.8
1,602,879	-				-0.5
1,602,879	-				-0.1
1,602,879	-				+0.2
1,602,879	-				+0.2
1,602,879	-				+1.8
1,602,879	-				+0.6
1,602,879	-				-1.5
1,602,879	-				+1.0
1,602,879	-				+0.5
1,602,879	-				+1.0
1,602,879	-				+0.8
1,602,890	-				+0.2
1,602,890	-				+0.0
1,602,896	+				+0.2
1,602,897	-				+0.2
1,602,897	-				-0.7
1,602,903	-				-1.4
1,603,049	-		IAI47_07580	0.12	-1.2
1,603,049	-		IAI47_07580	0.12	+0.2
1,603,053	+		IAI47_07580	0.12	+0.8
1,603,053	+		IAI47_07580	0.12	+0.2
1,603,053	+		IAI47_07580	0.12	-0.5
1,603,053	+		IAI47_07580	0.12	+0.2
1,603,053	+		IAI47_07580	0.12	-0.1
1,603,053	+		IAI47_07580	0.12	+0.2
1,603,053	+		IAI47_07580	0.12	-0.2
1,603,053	+		IAI47_07580	0.12	+0.6
1,603,053	+		IAI47_07580	0.12	-0.6
1,603,054	-		IAI47_07580	0.12	-0.4
1,603,054	-		IAI47_07580	0.12	+0.2
1,603,054	-		IAI47_07580	0.12	-0.5
1,603,054	-		IAI47_07580	0.12	+0.9
1,603,219	-		IAI47_07580	0.23	+2.2
1,603,343	+		IAI47_07580	0.32	-0.6
1,603,343	+		IAI47_07580	0.32	+1.2
1,603,344	-		IAI47_07580	0.32	-0.8
1,603,344	-		IAI47_07580	0.32	+0.6
1,603,344	-		IAI47_07580	0.32	+0.8
1,603,344	-		IAI47_07580	0.32	+0.6
1,603,346	-		IAI47_07580	0.32	+0.5
1,603,424	+		IAI47_07580	0.37	+0.8
1,603,425	-		IAI47_07580	0.37	-1.4
1,603,510	+		IAI47_07580	0.43	-0.4
1,603,511	-		IAI47_07580	0.43	+0.6
1,603,580	+		IAI47_07580	0.48	+0.0
1,603,633	+		IAI47_07580	0.52	-1.4
1,603,633	+		IAI47_07580	0.52	-1.2
1,603,633	+		IAI47_07580	0.52	-0.1
1,603,633	+		IAI47_07580	0.52	-1.4
1,603,633	+		IAI47_07580	0.52	-1.8
1,603,633	+		IAI47_07580	0.52	+1.9
1,603,633	+		IAI47_07580	0.52	+0.2
1,603,634	-		IAI47_07580	0.52	-0.8
1,603,634	-		IAI47_07580	0.52	+0.3
1,603,634	-		IAI47_07580	0.52	-0.8
1,603,634	-		IAI47_07580	0.52	+1.4
1,603,694	+		IAI47_07580	0.56	-1.2
1,603,694	+		IAI47_07580	0.56	-0.4
1,603,694	+		IAI47_07580	0.56	+0.6
1,603,695	-		IAI47_07580	0.56	-0.8
1,603,727	+		IAI47_07580	0.58	+0.2
1,603,728	-		IAI47_07580	0.58	-0.7
1,603,770	-		IAI47_07580	0.61	-0.8
1,603,770	-		IAI47_07580	0.61	+0.6
1,603,770	-		IAI47_07580	0.61	-1.8
1,603,770	-		IAI47_07580	0.61	+0.2
1,603,787	+		IAI47_07580	0.62	+1.4
1,603,787	+		IAI47_07580	0.62	+1.2
1,603,787	+		IAI47_07580	0.62	+0.5
1,603,787	+		IAI47_07580	0.62	-0.0
1,603,787	+		IAI47_07580	0.62	-0.2
1,603,788	-		IAI47_07580	0.62	-0.5
1,603,788	-		IAI47_07580	0.62	+0.6
1,603,788	-		IAI47_07580	0.62	-0.4
1,603,788	-		IAI47_07580	0.62	+2.8
1,603,791	+		IAI47_07580	0.63	-1.2
1,603,792	-		IAI47_07580	0.63	-0.0
1,603,802	+		IAI47_07580	0.63	+0.5
1,603,803	-		IAI47_07580	0.63	-0.4
1,603,870	+		IAI47_07580	0.68	+0.2
1,603,870	+		IAI47_07580	0.68	+1.0
1,603,870	+		IAI47_07580	0.68	+0.2
1,603,870	+		IAI47_07580	0.68	+1.2
1,603,871	-		IAI47_07580	0.68	-0.9
1,603,871	-		IAI47_07580	0.68	+1.5
1,603,871	-		IAI47_07580	0.68	-0.3
1,603,871	-		IAI47_07580	0.68	-0.6
1,603,871	-		IAI47_07580	0.68	+0.4
1,603,871	-		IAI47_07580	0.68	+0.7
1,604,021	+		IAI47_07580	0.78	-1.1
1,604,027	+		IAI47_07580	0.79	+0.2
1,604,070	-		IAI47_07580	0.82	+0.3
1,604,070	-		IAI47_07580	0.82	-0.8
1,604,070	-		IAI47_07580	0.82	+0.8
1,604,070	-		IAI47_07580	0.82	-1.2
1,604,118	+		IAI47_07580	0.85	+1.5
1,604,119	-		IAI47_07580	0.85	+0.2
1,604,133	+		IAI47_07580	0.86	-1.1
1,604,133	-		IAI47_07580	0.86	-1.9
1,604,142	-		IAI47_07580	0.87	+1.0
1,604,205	-				-0.2
1,604,207	+				-0.6
1,604,216	+				-0.4
1,604,216	+				-0.4
1,604,264	-				-0.4
1,604,264	-				+0.0
1,604,298	+				+0.1
1,604,298	+				+0.2
1,604,298	+				-1.1
1,604,298	+				-0.4
1,604,299	-				+0.4
1,604,335	-				-0.2
1,604,338	+				-2.2
1,604,338	+				+0.2
1,604,339	-				-0.6
1,604,339	-				-0.0
1,604,339	-				+0.5
1,604,345	+				+1.3
1,604,345	+				-0.8
1,604,421	+				-0.7
1,604,425	-				+1.4
1,604,517	+				+0.1
1,604,518	-				+0.8
1,604,689	-				-0.9
1,604,700	+				+0.0
1,604,705	+				-0.4
1,604,706	-				-0.1
1,604,743	-				+0.9
1,604,743	-				-0.0
1,604,787	+				-1.0
1,604,828	+				-1.1
1,604,828	+				+1.4
1,604,828	+				-0.2
1,604,828	+				+0.6
1,604,829	-				-0.5
1,604,830	+				+0.2
1,604,831	-				+0.2
1,604,831	-				-0.2
1,604,831	-				-1.1
1,604,875	-				+1.9
1,604,875	-				-0.2
1,604,900	+				-0.8
1,604,901	-				+1.2
1,604,901	-				-0.8
1,604,901	-				-0.0
1,605,018	+		IAI47_07585	0.16	+1.8
1,605,019	-		IAI47_07585	0.16	+1.8
1,605,146	+		IAI47_07585	0.25	+0.3
1,605,146	+		IAI47_07585	0.25	-0.4
1,605,147	-		IAI47_07585	0.25	+0.2
1,605,147	-		IAI47_07585	0.25	-0.2
1,605,167	+		IAI47_07585	0.26	+0.0
1,605,168	-		IAI47_07585	0.26	+2.2
1,605,168	-		IAI47_07585	0.26	-0.6
1,605,168	-		IAI47_07585	0.26	+0.3
1,605,168	-		IAI47_07585	0.26	+0.7
1,605,227	+		IAI47_07585	0.30	+0.2
1,605,227	+		IAI47_07585	0.30	-0.2
1,605,227	+		IAI47_07585	0.30	-0.6
1,605,227	+		IAI47_07585	0.30	+0.5
1,605,227	+		IAI47_07585	0.30	-0.2
1,605,227	+		IAI47_07585	0.30	-0.4
1,605,228	-		IAI47_07585	0.30	+0.3
1,605,228	-		IAI47_07585	0.30	+0.6
1,605,228	-		IAI47_07585	0.30	-0.5
1,605,228	-		IAI47_07585	0.30	-0.6
1,605,228	-		IAI47_07585	0.30	-0.3
1,605,228	-		IAI47_07585	0.30	-0.6
1,605,228	-		IAI47_07585	0.30	-0.2
1,605,228	-		IAI47_07585	0.30	+1.0
1,605,228	-		IAI47_07585	0.30	+0.3