Strain Fitness in Pantoea sp. MT58 around IAI47_07110

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,498,829	+				+1.3
1,498,830	-				-0.7
1,498,833	+				-0.5
1,498,833	+				-0.2
1,498,833	+				+0.3
1,498,834	-				+0.4
1,498,834	-				-0.2
1,498,834	-				-0.8
1,498,834	-				+1.2
1,498,834	-				+2.5
1,499,000	+		IAI47_07105	0.25	+0.6
1,499,000	+		IAI47_07105	0.25	-0.8
1,499,000	+		IAI47_07105	0.25	+0.4
1,499,000	+		IAI47_07105	0.25	-0.6
1,499,000	+		IAI47_07105	0.25	-0.0
1,499,001	-		IAI47_07105	0.25	-0.2
1,499,001	-		IAI47_07105	0.25	-0.2
1,499,001	-		IAI47_07105	0.25	+0.2
1,499,001	-		IAI47_07105	0.25	-0.4
1,499,021	+		IAI47_07105	0.27	-1.5
1,499,056	+		IAI47_07105	0.32	-0.4
1,499,057	-		IAI47_07105	0.32	+2.0
1,499,099	-		IAI47_07105	0.37	-0.0
1,499,141	-		IAI47_07105	0.42	-0.6
1,499,260	-		IAI47_07105	0.56	+1.2
1,499,388	+		IAI47_07105	0.72	+0.7
1,499,389	-		IAI47_07105	0.72	+0.4
1,499,421	+		IAI47_07105	0.76	-0.1
1,499,421	+		IAI47_07105	0.76	+0.5
1,499,422	-		IAI47_07105	0.76	-0.1
1,499,425	+		IAI47_07105	0.76	+1.2
1,499,425	+		IAI47_07105	0.76	+0.8
1,499,425	+		IAI47_07105	0.76	+0.4
1,499,426	-		IAI47_07105	0.76	+0.1
1,499,426	-		IAI47_07105	0.76	+0.9
1,499,427	+		IAI47_07105	0.76	-0.4
1,499,468	-		IAI47_07105	0.81	+0.0
1,499,468	-		IAI47_07105	0.81	+0.6
1,499,566	-				-0.2
1,499,585	-				+0.9
1,499,585	-				-1.0
1,499,590	+				+0.7
1,499,623	+				+1.6
1,499,623	+				+1.2
1,499,623	+				+0.4
1,499,623	+				+2.0
1,499,623	+				+0.4
1,499,623	+				-0.1
1,499,623	+				+0.8
1,499,624	-				-0.4
1,499,624	-				+0.2
1,499,624	-				-1.0
1,499,637	+				-0.2
1,499,637	+				+1.3
1,499,637	+				-0.2
1,499,684	+				+1.2
1,499,700	-				-0.8
1,499,751	+				+0.4
1,499,751	+				+0.2
1,499,752	-				+1.5
1,499,752	-				+1.5
1,499,752	-				+1.4
1,499,752	-				+0.8
1,499,789	+				-0.1
1,499,789	+				+0.7
1,499,789	+				-0.1
1,499,790	-				-0.6
1,499,790	-				-1.5
1,499,815	-				-0.7
1,499,815	-				-2.6
1,499,848	+				+1.9
1,499,848	+				+0.6
1,499,848	+				-0.1
1,499,849	-				-0.3
1,499,849	-				+0.6
1,499,936	+		IAI47_07110	0.12	-0.2
1,499,936	+		IAI47_07110	0.12	-0.8
1,499,936	+		IAI47_07110	0.12	-1.4
1,499,936	+		IAI47_07110	0.12	+0.5
1,499,937	-		IAI47_07110	0.12	-0.4
1,499,937	-		IAI47_07110	0.12	-1.8
1,499,994	+		IAI47_07110	0.16	+0.3
1,499,994	+		IAI47_07110	0.16	-0.7
1,499,994	+		IAI47_07110	0.16	-1.4
1,499,995	-		IAI47_07110	0.16	-0.8
1,499,995	-		IAI47_07110	0.16	-0.2
1,500,119	+		IAI47_07110	0.26	+0.3
1,500,120	-		IAI47_07110	0.26	+0.0
1,500,120	-		IAI47_07110	0.26	-1.6
1,500,120	-		IAI47_07110	0.26	-0.1
1,500,120	-		IAI47_07110	0.26	-0.4
1,500,120	-				-0.2
1,500,123	-		IAI47_07110	0.26	-0.3
1,500,123	-		IAI47_07110	0.26	+0.2
1,500,123	-		IAI47_07110	0.26	+1.9
1,500,156	+		IAI47_07110	0.29	+0.0
1,500,156	+		IAI47_07110	0.29	-0.4
1,500,156	+		IAI47_07110	0.29	-0.8
1,500,157	-		IAI47_07110	0.29	+0.9
1,500,157	-		IAI47_07110	0.29	-1.4
1,500,157	-		IAI47_07110	0.29	-1.0
1,500,157	-		IAI47_07110	0.29	-0.7
1,500,157	-		IAI47_07110	0.29	+0.7
1,500,157	-		IAI47_07110	0.29	-0.5
1,500,157	-		IAI47_07110	0.29	+0.2
1,500,175	-		IAI47_07110	0.30	-0.2
1,500,179	+		IAI47_07110	0.31	-0.8
1,500,180	-		IAI47_07110	0.31	+0.8
1,500,188	-		IAI47_07110	0.31	-0.2
1,500,188	-		IAI47_07110	0.31	+0.8
1,500,207	+		IAI47_07110	0.33	-2.3
1,500,208	-		IAI47_07110	0.33	-2.0
1,500,208	-		IAI47_07110	0.33	-0.2
1,500,219	+		IAI47_07110	0.34	+0.2
1,500,219	+		IAI47_07110	0.34	-0.4
1,500,219	+		IAI47_07110	0.34	-0.1
1,500,220	-		IAI47_07110	0.34	-1.4
1,500,223	+		IAI47_07110	0.34	-0.3
1,500,223	+		IAI47_07110	0.34	+0.2
1,500,224	-		IAI47_07110	0.34	+0.5
1,500,240	+		IAI47_07110	0.36	-0.7
1,500,240	+		IAI47_07110	0.36	+0.2
1,500,240	+		IAI47_07110	0.36	-2.4
1,500,240	+		IAI47_07110	0.36	-1.0
1,500,240	+		IAI47_07110	0.36	-0.6
1,500,240	+		IAI47_07110	0.36	-0.8
1,500,240	+		IAI47_07110	0.36	+0.5
1,500,240	+		IAI47_07110	0.36	-0.1
1,500,240	+		IAI47_07110	0.36	+0.9
1,500,241	-		IAI47_07110	0.36	-1.6
1,500,241	-		IAI47_07110	0.36	-0.8
1,500,241	-		IAI47_07110	0.36	-0.2
1,500,241	-		IAI47_07110	0.36	-1.7
1,500,241	-		IAI47_07110	0.36	+0.3
1,500,241	-		IAI47_07110	0.36	-0.3
1,500,241	-		IAI47_07110	0.36	-0.6
1,500,241	-		IAI47_07110	0.36	+1.8
1,500,241	-		IAI47_07110	0.36	+1.5
1,500,241	-		IAI47_07110	0.36	-0.1
1,500,241	-		IAI47_07110	0.36	+0.3
1,500,241	-		IAI47_07110	0.36	+0.6
1,500,241	-		IAI47_07110	0.36	-1.0
1,500,241	-		IAI47_07110	0.36	-0.1
1,500,241	-		IAI47_07110	0.36	-0.1
1,500,357	+		IAI47_07110	0.45	-0.6
1,500,357	+		IAI47_07110	0.45	+2.2
1,500,357	+		IAI47_07110	0.45	-0.4
1,500,358	-		IAI47_07110	0.45	+1.2
1,500,358	-		IAI47_07110	0.45	+0.2
1,500,358	-		IAI47_07110	0.45	+1.2
1,500,358	-		IAI47_07110	0.45	-0.1
1,500,421	+		IAI47_07110	0.50	-1.4
1,500,421	+		IAI47_07110	0.50	+1.2
1,500,422	-		IAI47_07110	0.50	-0.7
1,500,422	-		IAI47_07110	0.50	+0.2
1,500,422	-		IAI47_07110	0.50	+2.2
1,500,462	+		IAI47_07110	0.53	+0.2
1,500,462	+		IAI47_07110	0.53	-1.0
1,500,462	+		IAI47_07110	0.53	-0.4
1,500,462	+		IAI47_07110	0.53	-0.8
1,500,463	-		IAI47_07110	0.53	+0.8
1,500,463	-		IAI47_07110	0.53	-0.4
1,500,463	-		IAI47_07110	0.53	+1.2
1,500,463	-		IAI47_07110	0.53	-0.6
1,500,463	-		IAI47_07110	0.53	-0.1
1,500,463	-		IAI47_07110	0.53	-0.3
1,500,618	+		IAI47_07110	0.65	-2.1
1,500,618	+		IAI47_07110	0.65	+0.8
1,500,618	+		IAI47_07110	0.65	+0.3
1,500,618	+		IAI47_07110	0.65	+0.2
1,500,619	-		IAI47_07110	0.65	-0.8
1,500,619	-		IAI47_07110	0.65	-0.2
1,500,619	-		IAI47_07110	0.65	-0.1
1,500,619	-		IAI47_07110	0.65	-1.7
1,500,619	-		IAI47_07110	0.65	+0.2
1,500,619	-		IAI47_07110	0.65	-1.1
1,500,627	+		IAI47_07110	0.66	-1.1
1,500,628	-		IAI47_07110	0.66	-1.4
1,500,677	-		IAI47_07110	0.70	+0.3
1,500,709	-		IAI47_07110	0.72	-0.6
1,500,805	-		IAI47_07110	0.80	-0.3
1,500,824	+		IAI47_07110	0.81	+0.0
1,500,825	-		IAI47_07110	0.81	-0.3
1,500,825	-		IAI47_07110	0.81	-1.4
1,500,837	+		IAI47_07110	0.82	-0.8
1,500,837	+		IAI47_07110	0.82	-1.6
1,500,838	-		IAI47_07110	0.82	-0.6
1,500,838	-		IAI47_07110	0.82	+1.2
1,500,862	+		IAI47_07110	0.84	+0.1
1,500,863	-		IAI47_07110	0.84	+0.5
1,500,863	-		IAI47_07110	0.84	-0.4
1,500,915	+		IAI47_07110	0.88	-0.3
1,500,916	-		IAI47_07110	0.88	+0.9
1,500,971	-				-1.2
1,501,024	+				+0.2
1,501,041	+				-1.1
1,501,041	+				-0.2
1,501,041	+				-1.0
1,501,042	-				-0.4
1,501,042	-				-0.1
1,501,042	-				+1.6
1,501,042	-				+1.2
1,501,042	-				-1.1
1,501,044	+				+1.0
1,501,044	+				-0.7
1,501,044	+				+0.6
1,501,044	+				-1.6
1,501,044	+				+0.4
1,501,045	-				+0.2
1,501,045	-				-0.4
1,501,045	-				+0.4
1,501,045	-				-0.1
1,501,045	-				-0.3
1,501,045	-				-0.5
1,501,045	-				-0.7
1,501,056	+				+0.5
1,501,056	+				-0.1
1,501,056	+				-0.6
1,501,057	-				+1.5
1,501,057	-				-0.6
1,501,057	-				-1.0
1,501,057	-				-0.1
1,501,057	-				-2.0
1,501,057	-				-0.1
1,501,063	+				-0.1
1,501,064	-				-1.3
1,501,064	-				+0.9
1,501,143	-		IAI47_07115	0.11	-0.2
1,501,155	+		IAI47_07115	0.13	+0.3
1,501,174	+		IAI47_07115	0.16	-0.3
1,501,174	+		IAI47_07115	0.16	-1.0
1,501,174	+		IAI47_07115	0.16	+0.5
1,501,174	+		IAI47_07115	0.16	-1.0
1,501,174	+		IAI47_07115	0.16	+0.2
1,501,174	+		IAI47_07115	0.16	+0.2
1,501,174	+		IAI47_07115	0.16	-0.0
1,501,174	+		IAI47_07115	0.16	+0.2
1,501,175	-		IAI47_07115	0.16	-0.6
1,501,175	-		IAI47_07115	0.16	+0.5
1,501,175	-		IAI47_07115	0.16	+1.6
1,501,175	-		IAI47_07115	0.16	+0.7
1,501,175	-		IAI47_07115	0.16	+1.0
1,501,175	-		IAI47_07115	0.16	+0.2
1,501,175	-		IAI47_07115	0.16	+0.0
1,501,223	+		IAI47_07115	0.25	+0.2
1,501,224	-		IAI47_07115	0.25	+0.9
1,501,284	-		IAI47_07115	0.36	-0.2
1,501,300	+		IAI47_07115	0.39	-1.0
1,501,301	-		IAI47_07115	0.39	+1.3
1,501,301	-		IAI47_07115	0.39	-1.8
1,501,301	-		IAI47_07115	0.39	-0.4
1,501,465	+		IAI47_07115	0.68	+0.3
1,501,466	-		IAI47_07115	0.69	-0.5
1,501,511	+		IAI47_07115	0.77	+0.8
1,501,511	+		IAI47_07115	0.77	-1.1
1,501,511	+		IAI47_07115	0.77	-0.7
1,501,512	-		IAI47_07115	0.77	+0.6
1,501,512	-		IAI47_07115	0.77	+0.9
1,501,526	+		IAI47_07115	0.79	-0.1
1,501,527	-		IAI47_07115	0.80	+0.2
1,501,677	+				-2.5
1,501,678	-				-0.7
1,501,742	-		IAI47_07120	0.14	+0.2
1,501,837	+		IAI47_07120	0.27	-0.5
1,501,876	-		IAI47_07120	0.32	+0.2
1,501,876	-		IAI47_07120	0.32	-2.1
1,501,876	-		IAI47_07120	0.32	-0.9
1,501,888	+		IAI47_07120	0.33	-0.8
1,501,888	+		IAI47_07120	0.33	-0.1
1,501,940	+		IAI47_07120	0.40	+0.9
1,501,940	+		IAI47_07120	0.40	+1.2
1,501,940	+		IAI47_07120	0.40	-0.8
1,501,940	+		IAI47_07120	0.40	-1.7
1,501,940	+		IAI47_07120	0.40	-1.1
1,501,940	+		IAI47_07120	0.40	-0.8
1,501,940	+		IAI47_07120	0.40	+0.4
1,501,941	-		IAI47_07120	0.40	-1.0
1,501,941	-		IAI47_07120	0.40	-0.4