Strain Fitness in Pantoea sp. MT58 around IAI47_06185

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,258,293	+				+0.4
1,258,293	+				+0.8
1,258,294	-				-0.6
1,258,300	+				-1.1
1,258,301	-				-0.1
1,258,354	-				+0.6
1,258,362	+				-0.9
1,258,362	+				+1.2
1,258,362	+				+0.2
1,258,362	+				+0.8
1,258,362	+				-2.4
1,258,363	-				-1.2
1,258,363	-				+1.5
1,258,372	+				+0.2
1,258,372	+				-2.0
1,258,372	+				+0.2
1,258,372	+				+1.8
1,258,373	-				+0.4
1,258,373	-				-1.0
1,258,373	-				-0.4
1,258,375	+				+0.6
1,258,376	-				+1.8
1,258,376	-				-0.2
1,258,406	+				-1.6
1,258,407	-				+0.9
1,258,486	+				+1.2
1,258,487	-				-0.1
1,258,540	-		IAI47_06185	0.12	+1.2
1,258,596	+		IAI47_06185	0.16	+0.2
1,258,664	-		IAI47_06185	0.20	-1.8
1,258,664	-		IAI47_06185	0.20	+0.2
1,258,664	-		IAI47_06185	0.20	-0.3
1,258,664	-		IAI47_06185	0.20	-0.8
1,258,779	+		IAI47_06185	0.28	-0.6
1,258,787	+		IAI47_06185	0.29	+0.1
1,258,788	-		IAI47_06185	0.29	-0.5
1,258,862	+		IAI47_06185	0.34	-2.6
1,258,863	-		IAI47_06185	0.34	-1.2
1,258,863	-		IAI47_06185	0.34	-1.0
1,258,918	+		IAI47_06185	0.38	+1.4
1,258,918	+		IAI47_06185	0.38	-0.9
1,258,918	+		IAI47_06185	0.38	+1.8
1,258,919	-		IAI47_06185	0.38	-1.6
1,258,937	-		IAI47_06185	0.40	-0.3
1,258,937	-		IAI47_06185	0.40	-0.0
1,258,947	+		IAI47_06185	0.40	+0.8
1,258,947	+		IAI47_06185	0.40	+0.4
1,258,948	-		IAI47_06185	0.40	-2.0
1,258,948	-		IAI47_06185	0.40	-0.5
1,259,026	+		IAI47_06185	0.46	+0.2
1,259,026	+		IAI47_06185	0.46	-0.5
1,259,027	-		IAI47_06185	0.46	+0.4
1,259,047	+		IAI47_06185	0.47	+0.8
1,259,047	+		IAI47_06185	0.47	-0.4
1,259,047	+		IAI47_06185	0.47	+0.1
1,259,047	+		IAI47_06185	0.47	+1.8
1,259,047	+		IAI47_06185	0.47	-0.1
1,259,047	+		IAI47_06185	0.47	+0.1
1,259,047	+		IAI47_06185	0.47	+1.2
1,259,048	-		IAI47_06185	0.47	+0.2
1,259,208	+		IAI47_06185	0.59	-0.1
1,259,208	+		IAI47_06185	0.59	-0.8
1,259,209	-		IAI47_06185	0.59	-0.8
1,259,209	-		IAI47_06185	0.59	-1.1
1,259,209	-		IAI47_06185	0.59	-0.4
1,259,287	+		IAI47_06185	0.64	-0.6
1,259,288	-		IAI47_06185	0.64	+0.5
1,259,318	-		IAI47_06185	0.66	-1.2
1,259,367	+		IAI47_06185	0.70	-0.4
1,259,367	+		IAI47_06185	0.70	+1.0
1,259,367	+		IAI47_06185	0.70	-0.5
1,259,368	-		IAI47_06185	0.70	-0.7
1,259,368	-		IAI47_06185	0.70	+0.6
1,259,368	-		IAI47_06185	0.70	+1.8
1,259,412	+		IAI47_06185	0.73	+0.2
1,259,412	+		IAI47_06185	0.73	-0.9
1,259,413	-		IAI47_06185	0.73	+0.2
1,259,413	-		IAI47_06185	0.73	-0.8
1,259,568	-		IAI47_06185	0.84	+1.1
1,259,593	+		IAI47_06185	0.86	+1.0
1,259,593	+		IAI47_06185	0.86	-1.5
1,259,594	-		IAI47_06185	0.86	-0.1
1,259,594	-		IAI47_06185	0.86	-0.4
1,259,594	-		IAI47_06185	0.86	-1.6
1,259,618	-		IAI47_06185	0.87	-0.0
1,259,618	-		IAI47_06185	0.87	+1.8
1,259,679	+				-0.6
1,259,679	+				+0.6
1,259,680	-				-0.2
1,259,781	+				+1.6
1,259,781	+				-0.0
1,259,782	-				-1.4
1,259,782	-				-0.1
1,259,798	+				+0.2
1,259,798	+				+1.4
1,259,798	+				+0.2
1,259,799	-				+0.9
1,259,799	-				-0.3
1,259,827	+				+1.1
1,259,833	+				-0.6
1,259,834	-				-0.4
1,259,852	+				-1.1
1,259,885	+				-1.2
1,259,885	+				-0.5
1,259,885	+				-0.6
1,259,885	+				-0.6
1,259,885	+				-0.8
1,259,885	+				-0.3
1,259,886	-				-0.8
1,259,886	-				-0.2
1,259,886	-				-2.1
1,259,886	-				+0.7
1,259,886	-				+1.0
1,259,886	-				-0.8
1,259,899	+				-0.6
1,259,937	+		IAI47_06190	0.11	+0.2
1,259,959	-		IAI47_06190	0.16	-0.1
1,259,961	+		IAI47_06190	0.17	-0.1
1,259,961	+		IAI47_06190	0.17	-1.2
1,260,011	+		IAI47_06190	0.28	+1.2
1,260,135	+		IAI47_06190	0.56	-0.3
1,260,136	-		IAI47_06190	0.56	-1.6
1,260,136	-		IAI47_06190	0.56	+1.0
1,260,136	-		IAI47_06190	0.56	-0.3
1,260,136	-		IAI47_06190	0.56	-0.2
1,260,144	+		IAI47_06190	0.58	+0.5
1,260,144	+		IAI47_06190	0.58	-0.8
1,260,145	-		IAI47_06190	0.58	+0.5
1,260,145	-		IAI47_06190	0.58	-0.5
1,260,165	-		IAI47_06190	0.63	-0.8
1,260,214	+		IAI47_06190	0.74	-1.1
1,260,215	-		IAI47_06190	0.74	-0.2
1,260,223	+		IAI47_06190	0.76	-0.0
1,260,223	+		IAI47_06190	0.76	+0.6
1,260,327	+				-0.3
1,260,327	+				-1.2
1,260,327	+				+0.5
1,260,328	-				-0.4
1,260,328	-				+1.5
1,260,349	+				+1.1
1,260,375	+				-0.1
1,260,375	+				-0.7
1,260,375	+				-0.5
1,260,376	-				+1.4
1,260,376	-				-0.2
1,260,603	-		IAI47_06195	0.26	-1.4
1,260,713	+		IAI47_06195	0.36	+0.2
1,260,714	-		IAI47_06195	0.37	-1.4