Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04095 and IAI47_04100 are separated by 19 nucleotides IAI47_04100 and IAI47_04105 are separated by 74 nucleotides IAI47_04105 and IAI47_04110 are separated by 188 nucleotides
IAI47_04095: IAI47_04095 - 2-dehydro-3-deoxyglucarate aldolase, at 856,687 to 857,457
_04095
IAI47_04100: IAI47_04100 - 2-hydroxy-3-oxopropionate reductase, at 857,477 to 858,361
_04100
IAI47_04105: IAI47_04105 - glycerate kinase, at 858,436 to 859,575
_04105
IAI47_04110: IAI47_04110 - two-component sensor histidine kinase BarA, at 859,764 to 862,493
_04110
Position (kb) 858
859
860 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 857.449 kb on - strand at 857.449 kb on - strand at 857.449 kb on - strand at 857.463 kb on + strand at 857.464 kb on - strand at 857.491 kb on + strand at 857.556 kb on + strand at 857.557 kb on - strand at 857.557 kb on - strand at 857.596 kb on + strand, within IAI47_04100 at 857.597 kb on - strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.717 kb on - strand, within IAI47_04100 at 857.787 kb on + strand, within IAI47_04100 at 857.788 kb on - strand, within IAI47_04100 at 857.893 kb on + strand, within IAI47_04100 at 857.894 kb on - strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.916 kb on - strand, within IAI47_04100 at 857.916 kb on - strand, within IAI47_04100 at 857.954 kb on - strand, within IAI47_04100 at 857.983 kb on + strand, within IAI47_04100 at 857.983 kb on + strand, within IAI47_04100 at 857.984 kb on - strand, within IAI47_04100 at 857.984 kb on - strand, within IAI47_04100 at 858.081 kb on - strand, within IAI47_04100 at 858.211 kb on + strand, within IAI47_04100 at 858.211 kb on + strand, within IAI47_04100 at 858.212 kb on - strand, within IAI47_04100 at 858.212 kb on - strand, within IAI47_04100 at 858.323 kb on + strand at 858.323 kb on + strand at 858.323 kb on + strand at 858.324 kb on - strand at 858.324 kb on - strand at 858.324 kb on - strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.327 kb on - strand at 858.327 kb on - strand at 858.337 kb on - strand at 858.337 kb on - strand at 858.359 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.464 kb on - strand at 858.464 kb on - strand at 858.465 kb on + strand at 858.465 kb on + strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.476 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.582 kb on - strand, within IAI47_04105 at 858.582 kb on - strand, within IAI47_04105 at 858.664 kb on + strand, within IAI47_04105 at 858.664 kb on + strand, within IAI47_04105 at 858.665 kb on - strand, within IAI47_04105 at 858.665 kb on - strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.696 kb on + strand, within IAI47_04105 at 858.758 kb on + strand, within IAI47_04105 at 858.819 kb on + strand, within IAI47_04105 at 858.820 kb on - strand, within IAI47_04105 at 858.820 kb on - strand, within IAI47_04105 at 858.832 kb on - strand, within IAI47_04105 at 858.960 kb on + strand, within IAI47_04105 at 858.961 kb on - strand, within IAI47_04105 at 858.961 kb on - strand, within IAI47_04105 at 859.021 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.131 kb on + strand, within IAI47_04105 at 859.132 kb on - strand, within IAI47_04105 at 859.149 kb on + strand, within IAI47_04105 at 859.150 kb on - strand, within IAI47_04105 at 859.303 kb on - strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.335 kb on + strand, within IAI47_04105 at 859.335 kb on + strand, within IAI47_04105 at 859.336 kb on - strand, within IAI47_04105 at 859.381 kb on - strand, within IAI47_04105 at 859.381 kb on - strand, within IAI47_04105 at 859.398 kb on + strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.472 kb on - strand at 859.472 kb on - strand at 859.472 kb on - strand at 859.536 kb on + strand at 859.536 kb on + strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.594 kb on + strand at 859.594 kb on + strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.597 kb on + strand at 859.597 kb on + strand at 859.598 kb on - strand at 859.598 kb on - strand at 859.634 kb on - strand at 859.647 kb on + strand at 859.664 kb on + strand at 859.664 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.698 kb on - strand at 859.698 kb on - strand at 859.698 kb on - strand at 859.702 kb on + strand at 859.703 kb on - strand at 859.776 kb on + strand at 859.776 kb on + strand at 859.921 kb on + strand at 859.922 kb on - strand at 859.949 kb on + strand at 859.949 kb on + strand at 860.016 kb on + strand at 860.063 kb on + strand, within IAI47_04110 at 860.063 kb on + strand, within IAI47_04110 at 860.106 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.151 kb on - strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.153 kb on - strand, within IAI47_04110 at 860.173 kb on - strand, within IAI47_04110 at 860.173 kb on - strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.306 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.393 kb on + strand, within IAI47_04110 at 860.394 kb on - strand, within IAI47_04110 at 860.462 kb on + strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.477 kb on + strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.557 kb on - strand, within IAI47_04110
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 857,449 - +1.1 857,449 - -1.0 857,449 - +0.3 857,463 + -0.5 857,464 - -0.3 857,491 + -1.2 857,556 + -1.2 857,557 - -0.3 857,557 - +1.7 857,596 + IAI47_04100 0.13 +0.5 857,597 - IAI47_04100 0.14 +0.0 857,659 + IAI47_04100 0.21 -0.4 857,659 + IAI47_04100 0.21 +0.6 857,659 + IAI47_04100 0.21 +0.5 857,659 + IAI47_04100 0.21 +0.4 857,660 - IAI47_04100 0.21 -2.6 857,660 - IAI47_04100 0.21 +0.3 857,660 - IAI47_04100 0.21 -0.0 857,660 - IAI47_04100 0.21 -0.6 857,717 - IAI47_04100 0.27 -0.3 857,787 + IAI47_04100 0.35 +0.3 857,788 - IAI47_04100 0.35 +0.3 857,893 + IAI47_04100 0.47 +1.1 857,894 - IAI47_04100 0.47 +1.8 857,915 + IAI47_04100 0.49 -0.1 857,915 + IAI47_04100 0.49 +1.3 857,915 + IAI47_04100 0.49 +0.6 857,915 + IAI47_04100 0.49 +0.7 857,915 + IAI47_04100 0.49 +0.8 857,916 - IAI47_04100 0.50 +0.5 857,916 - IAI47_04100 0.50 -0.1 857,954 - IAI47_04100 0.54 +0.1 857,983 + IAI47_04100 0.57 +0.4 857,983 + IAI47_04100 0.57 +0.8 857,984 - IAI47_04100 0.57 +0.5 857,984 - IAI47_04100 0.57 -0.7 858,081 - IAI47_04100 0.68 +0.1 858,211 + IAI47_04100 0.83 +0.1 858,211 + IAI47_04100 0.83 +0.9 858,212 - IAI47_04100 0.83 -0.1 858,212 - IAI47_04100 0.83 +0.0 858,323 + -0.2 858,323 + +0.3 858,323 + +0.7 858,324 - -0.6 858,324 - +0.3 858,324 - -0.5 858,326 + +0.3 858,326 + -0.2 858,326 + -1.6 858,326 + -0.2 858,327 - +0.3 858,327 - -0.7 858,337 - +0.3 858,337 - -0.3 858,359 + +0.3 858,463 + +0.3 858,463 + -2.4 858,463 + -2.6 858,463 + -0.7 858,463 + -1.7 858,464 - -0.3 858,464 - -1.7 858,465 + -3.2 858,465 + -0.3 858,466 - -2.1 858,466 - -0.7 858,466 - -1.7 858,466 - -3.9 858,476 + -3.1 858,541 + -0.7 858,541 + -1.3 858,541 + -0.7 858,541 + -2.6 858,542 - -2.0 858,542 - -3.7 858,542 - -2.1 858,542 - -1.3 858,581 + IAI47_04105 0.13 -3.4 858,581 + IAI47_04105 0.13 -3.3 858,581 + IAI47_04105 0.13 -2.7 858,581 + IAI47_04105 0.13 -1.7 858,582 - IAI47_04105 0.13 -0.3 858,582 - IAI47_04105 0.13 -1.7 858,664 + IAI47_04105 0.20 -0.5 858,664 + IAI47_04105 0.20 -1.7 858,665 - IAI47_04105 0.20 -2.3 858,665 - IAI47_04105 0.20 -0.7 858,694 + IAI47_04105 0.23 -2.7 858,694 + IAI47_04105 0.23 -3.2 858,694 + IAI47_04105 0.23 -1.7 858,694 + IAI47_04105 0.23 -4.6 858,694 + IAI47_04105 0.23 -3.7 858,694 + IAI47_04105 0.23 -2.1 858,694 + IAI47_04105 0.23 -0.7 858,695 - IAI47_04105 0.23 -2.7 858,695 - IAI47_04105 0.23 +0.3 858,695 - IAI47_04105 0.23 +0.3 858,696 + IAI47_04105 0.23 -4.1 858,758 + IAI47_04105 0.28 -1.7 858,819 + IAI47_04105 0.34 -2.1 858,820 - IAI47_04105 0.34 -2.7 858,820 - IAI47_04105 0.34 -2.7 858,832 - IAI47_04105 0.35 +0.3 858,960 + IAI47_04105 0.46 -2.7 858,961 - IAI47_04105 0.46 -2.7 858,961 - IAI47_04105 0.46 -2.9 859,021 - IAI47_04105 0.51 -2.9 859,121 - IAI47_04105 0.60 -3.1 859,121 - IAI47_04105 0.60 -2.6 859,121 - IAI47_04105 0.60 -3.1 859,121 - IAI47_04105 0.60 -1.7 859,131 + IAI47_04105 0.61 -0.7 859,132 - IAI47_04105 0.61 -3.4 859,149 + IAI47_04105 0.63 -4.4 859,150 - IAI47_04105 0.63 -2.3 859,303 - IAI47_04105 0.76 -3.9 859,332 + IAI47_04105 0.79 -2.3 859,332 + IAI47_04105 0.79 -0.7 859,332 + IAI47_04105 0.79 -1.3 859,332 + IAI47_04105 0.79 -3.1 859,333 - IAI47_04105 0.79 +1.3 859,333 - IAI47_04105 0.79 -2.1 859,333 - IAI47_04105 0.79 -3.3 859,333 - IAI47_04105 0.79 -2.2 859,333 - IAI47_04105 0.79 -1.3 859,335 + IAI47_04105 0.79 -0.7 859,335 + IAI47_04105 0.79 -2.4 859,336 - IAI47_04105 0.79 +0.3 859,381 - IAI47_04105 0.83 -2.6 859,381 - IAI47_04105 0.83 -3.1 859,398 + IAI47_04105 0.84 -1.7 859,399 - IAI47_04105 0.84 -2.9 859,399 - IAI47_04105 0.84 -2.7 859,399 - IAI47_04105 0.84 -1.0 859,471 + -2.9 859,471 + -1.7 859,471 + -3.0 859,471 + -2.1 859,471 + -0.7 859,471 + -1.3 859,472 - -1.7 859,472 - -3.6 859,472 - -2.3 859,536 + -0.7 859,536 + -1.7 859,537 - -1.7 859,537 - -3.4 859,537 - -1.1 859,537 - -2.9 859,537 - -2.7 859,537 - -1.7 859,594 + -0.4 859,594 + -0.2 859,595 - -0.8 859,595 - -0.5 859,595 - +1.6 859,595 - +0.5 859,595 - -0.7 859,597 + +0.9 859,597 + -0.9 859,598 - -0.3 859,598 - -1.0 859,634 - -0.2 859,647 + +1.6 859,664 + -0.8 859,664 + -0.7 859,697 + +0.5 859,697 + +0.3 859,697 + +3.4 859,697 + -0.2 859,697 + +0.5 859,697 + +1.8 859,697 + +0.0 859,697 + -1.7 859,698 - -0.9 859,698 - -0.0 859,698 - +0.8 859,702 + +0.3 859,703 - -0.6 859,776 + -0.5 859,776 + -0.2 859,921 + +0.3 859,922 - -1.9 859,949 + -0.7 859,949 + -3.0 860,016 + -0.1 860,063 + IAI47_04110 0.11 -2.4 860,063 + IAI47_04110 0.11 +0.7 860,106 + IAI47_04110 0.13 -1.6 860,109 + IAI47_04110 0.13 +0.3 860,109 + IAI47_04110 0.13 -2.6 860,109 + IAI47_04110 0.13 -1.7 860,109 + IAI47_04110 0.13 -1.3 860,109 + IAI47_04110 0.13 -1.9 860,109 + IAI47_04110 0.13 -1.4 860,109 + IAI47_04110 0.13 -1.3 860,110 - IAI47_04110 0.13 -0.7 860,110 - IAI47_04110 0.13 -0.7 860,110 - IAI47_04110 0.13 -1.9 860,110 - IAI47_04110 0.13 -1.3 860,110 - IAI47_04110 0.13 -2.1 860,110 - IAI47_04110 0.13 +1.1 860,110 - IAI47_04110 0.13 +0.1 860,150 + IAI47_04110 0.14 +0.8 860,150 + IAI47_04110 0.14 -1.2 860,150 + IAI47_04110 0.14 -2.1 860,151 - IAI47_04110 0.14 -0.4 860,152 + IAI47_04110 0.14 +0.3 860,152 + IAI47_04110 0.14 -1.3 860,152 + IAI47_04110 0.14 -1.3 860,152 + IAI47_04110 0.14 -1.2 860,153 - IAI47_04110 0.14 -0.6 860,173 - IAI47_04110 0.15 -0.7 860,173 - IAI47_04110 0.15 -0.4 860,203 + IAI47_04110 0.16 -2.2 860,203 + IAI47_04110 0.16 -2.2 860,203 + IAI47_04110 0.16 -0.3 860,203 + IAI47_04110 0.16 -3.3 860,204 - IAI47_04110 0.16 -0.6 860,204 - IAI47_04110 0.16 -0.6 860,204 - IAI47_04110 0.16 +0.3 860,306 + IAI47_04110 0.20 -1.3 860,348 + IAI47_04110 0.21 +0.1 860,348 + IAI47_04110 0.21 -0.1 860,348 + IAI47_04110 0.21 -1.3 860,348 + IAI47_04110 0.21 -1.9 860,393 + IAI47_04110 0.23 -2.2 860,394 - IAI47_04110 0.23 -2.9 860,462 + IAI47_04110 0.26 -1.4 860,463 - IAI47_04110 0.26 -1.6 860,463 - IAI47_04110 0.26 -3.1 860,463 - IAI47_04110 0.26 +0.6 860,463 - IAI47_04110 0.26 -1.7 860,477 + IAI47_04110 0.26 +0.3 860,478 - IAI47_04110 0.26 -1.3 860,478 - IAI47_04110 0.26 -0.2 860,478 - IAI47_04110 0.26 -0.4 860,478 - IAI47_04110 0.26 +0.8 860,557 - IAI47_04110 0.29 -0.1
Or see this region's nucleotide sequence