Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04085 and IAI47_04090 are separated by 10 nucleotides IAI47_04090 and IAI47_04095 are separated by 45 nucleotides IAI47_04095 and IAI47_04100 are separated by 19 nucleotides
IAI47_04085: IAI47_04085 - glucarate dehydratase, at 853,953 to 855,299
_04085
IAI47_04090: IAI47_04090 - glucarate dehydratase, at 855,310 to 856,641
_04090
IAI47_04095: IAI47_04095 - 2-dehydro-3-deoxyglucarate aldolase, at 856,687 to 857,457
_04095
IAI47_04100: IAI47_04100 - 2-hydroxy-3-oxopropionate reductase, at 857,477 to 858,361
_04100
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 854.338 kb on + strand, within IAI47_04085 at 854.339 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.423 kb on + strand, within IAI47_04085 at 854.423 kb on + strand, within IAI47_04085 at 854.440 kb on - strand, within IAI47_04085 at 854.444 kb on + strand, within IAI47_04085 at 854.444 kb on + strand, within IAI47_04085 at 854.445 kb on - strand, within IAI47_04085 at 854.445 kb on - strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.541 kb on - strand, within IAI47_04085 at 854.541 kb on - strand, within IAI47_04085 at 854.544 kb on + strand, within IAI47_04085 at 854.544 kb on + strand, within IAI47_04085 at 854.545 kb on - strand, within IAI47_04085 at 854.552 kb on + strand, within IAI47_04085 at 854.553 kb on - strand, within IAI47_04085 at 854.643 kb on - strand, within IAI47_04085 at 854.643 kb on - strand, within IAI47_04085 at 854.657 kb on + strand, within IAI47_04085 at 854.657 kb on + strand, within IAI47_04085 at 854.658 kb on - strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.697 kb on - strand, within IAI47_04085 at 854.697 kb on - strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.722 kb on - strand, within IAI47_04085 at 854.754 kb on + strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.972 kb on + strand, within IAI47_04085 at 854.973 kb on - strand, within IAI47_04085 at 854.984 kb on + strand, within IAI47_04085 at 854.985 kb on - strand, within IAI47_04085 at 854.985 kb on - strand, within IAI47_04085 at 855.002 kb on + strand, within IAI47_04085 at 855.003 kb on - strand, within IAI47_04085 at 855.047 kb on + strand, within IAI47_04085 at 855.169 kb on + strand at 855.169 kb on + strand at 855.169 kb on + strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.189 kb on + strand at 855.189 kb on + strand at 855.190 kb on - strand at 855.190 kb on - strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.297 kb on + strand at 855.297 kb on + strand at 855.297 kb on + strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.345 kb on + strand at 855.346 kb on - strand at 855.346 kb on - strand at 855.361 kb on + strand at 855.362 kb on - strand at 855.362 kb on - strand at 855.435 kb on + strand at 855.748 kb on + strand, within IAI47_04090 at 855.749 kb on - strand, within IAI47_04090 at 855.757 kb on + strand, within IAI47_04090 at 855.757 kb on + strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.775 kb on - strand, within IAI47_04090 at 855.791 kb on - strand, within IAI47_04090 at 855.823 kb on + strand, within IAI47_04090 at 855.823 kb on + strand, within IAI47_04090 at 855.839 kb on + strand, within IAI47_04090 at 855.866 kb on + strand, within IAI47_04090 at 855.867 kb on - strand, within IAI47_04090 at 855.867 kb on - strand, within IAI47_04090 at 855.887 kb on - strand, within IAI47_04090 at 855.887 kb on - strand, within IAI47_04090 at 855.895 kb on + strand, within IAI47_04090 at 855.895 kb on + strand, within IAI47_04090 at 855.896 kb on - strand, within IAI47_04090 at 855.896 kb on - strand, within IAI47_04090 at 855.908 kb on - strand, within IAI47_04090 at 855.993 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.060 kb on + strand, within IAI47_04090 at 856.073 kb on - strand, within IAI47_04090 at 856.105 kb on + strand, within IAI47_04090 at 856.105 kb on + strand, within IAI47_04090 at 856.106 kb on - strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.200 kb on + strand, within IAI47_04090 at 856.201 kb on - strand, within IAI47_04090 at 856.354 kb on - strand, within IAI47_04090 at 856.354 kb on - strand, within IAI47_04090 at 856.398 kb on + strand, within IAI47_04090 at 856.399 kb on - strand, within IAI47_04090 at 856.399 kb on - strand, within IAI47_04090 at 856.455 kb on + strand, within IAI47_04090 at 856.455 kb on + strand, within IAI47_04090 at 856.464 kb on + strand, within IAI47_04090 at 856.464 kb on + strand, within IAI47_04090 at 856.499 kb on + strand, within IAI47_04090 at 856.510 kb on - strand at 856.541 kb on - strand at 856.592 kb on + strand at 856.617 kb on + strand at 856.618 kb on - strand at 856.692 kb on + strand at 856.692 kb on + strand at 856.692 kb on + strand at 856.692 kb on + strand at 856.692 kb on + strand at 856.693 kb on - strand at 856.693 kb on - strand at 856.862 kb on + strand, within IAI47_04095 at 856.863 kb on - strand, within IAI47_04095 at 856.938 kb on + strand, within IAI47_04095 at 856.938 kb on + strand, within IAI47_04095 at 856.938 kb on + strand, within IAI47_04095 at 856.939 kb on - strand, within IAI47_04095 at 856.939 kb on - strand, within IAI47_04095 at 856.939 kb on - strand, within IAI47_04095 at 856.963 kb on - strand, within IAI47_04095 at 857.080 kb on + strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.081 kb on - strand, within IAI47_04095 at 857.098 kb on + strand, within IAI47_04095 at 857.098 kb on + strand, within IAI47_04095 at 857.098 kb on + strand, within IAI47_04095 at 857.099 kb on - strand, within IAI47_04095 at 857.243 kb on - strand, within IAI47_04095 at 857.283 kb on + strand, within IAI47_04095 at 857.284 kb on - strand, within IAI47_04095 at 857.342 kb on + strand, within IAI47_04095 at 857.362 kb on + strand, within IAI47_04095 at 857.435 kb on + strand at 857.449 kb on - strand at 857.449 kb on - strand at 857.449 kb on - strand at 857.463 kb on + strand at 857.464 kb on - strand at 857.491 kb on + strand at 857.556 kb on + strand at 857.557 kb on - strand at 857.557 kb on - strand at 857.596 kb on + strand, within IAI47_04100 at 857.597 kb on - strand, within IAI47_04100
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 854,338 + IAI47_04085 0.29 -0.5 854,339 - IAI47_04085 0.29 -1.4 854,398 - IAI47_04085 0.33 +0.1 854,398 - IAI47_04085 0.33 -0.2 854,398 - IAI47_04085 0.33 -0.3 854,406 + IAI47_04085 0.34 -0.0 854,406 + IAI47_04085 0.34 +0.3 854,406 + IAI47_04085 0.34 -0.4 854,406 + IAI47_04085 0.34 +1.8 854,406 + IAI47_04085 0.34 -0.7 854,406 + IAI47_04085 0.34 -0.2 854,407 - IAI47_04085 0.34 -0.7 854,407 - IAI47_04085 0.34 +1.4 854,407 - IAI47_04085 0.34 +0.3 854,423 + IAI47_04085 0.35 +1.7 854,423 + IAI47_04085 0.35 +3.1 854,440 - IAI47_04085 0.36 -0.5 854,444 + IAI47_04085 0.36 +0.7 854,444 + IAI47_04085 0.36 +0.6 854,445 - IAI47_04085 0.37 -0.6 854,445 - IAI47_04085 0.37 -0.7 854,472 + IAI47_04085 0.39 -0.6 854,472 + IAI47_04085 0.39 -0.4 854,472 + IAI47_04085 0.39 +0.1 854,472 + IAI47_04085 0.39 -1.5 854,472 + IAI47_04085 0.39 -0.3 854,473 - IAI47_04085 0.39 +0.8 854,473 - IAI47_04085 0.39 +0.1 854,473 - IAI47_04085 0.39 +0.8 854,473 - IAI47_04085 0.39 +0.8 854,540 + IAI47_04085 0.44 -0.3 854,540 + IAI47_04085 0.44 +0.5 854,540 + IAI47_04085 0.44 +0.3 854,540 + IAI47_04085 0.44 -0.4 854,540 + IAI47_04085 0.44 -0.4 854,541 - IAI47_04085 0.44 -0.2 854,541 - IAI47_04085 0.44 +1.3 854,544 + IAI47_04085 0.44 +0.4 854,544 + IAI47_04085 0.44 +0.9 854,545 - IAI47_04085 0.44 -1.2 854,552 + IAI47_04085 0.44 +1.8 854,553 - IAI47_04085 0.45 +0.3 854,643 - IAI47_04085 0.51 -0.6 854,643 - IAI47_04085 0.51 -0.2 854,657 + IAI47_04085 0.52 -0.4 854,657 + IAI47_04085 0.52 -0.2 854,658 - IAI47_04085 0.52 +1.7 854,696 + IAI47_04085 0.55 +2.6 854,696 + IAI47_04085 0.55 +0.7 854,696 + IAI47_04085 0.55 -0.1 854,697 - IAI47_04085 0.55 -0.2 854,697 - IAI47_04085 0.55 +0.7 854,721 + IAI47_04085 0.57 +0.5 854,721 + IAI47_04085 0.57 +0.4 854,721 + IAI47_04085 0.57 +0.8 854,722 - IAI47_04085 0.57 -1.3 854,754 + IAI47_04085 0.59 +1.8 854,755 - IAI47_04085 0.60 -0.7 854,755 - IAI47_04085 0.60 +1.6 854,755 - IAI47_04085 0.60 +1.8 854,816 + IAI47_04085 0.64 +0.3 854,816 + IAI47_04085 0.64 +0.3 854,816 + IAI47_04085 0.64 -0.2 854,816 + IAI47_04085 0.64 +0.6 854,816 + IAI47_04085 0.64 +0.3 854,817 - IAI47_04085 0.64 -1.0 854,817 - IAI47_04085 0.64 -0.1 854,817 - IAI47_04085 0.64 +0.6 854,817 - IAI47_04085 0.64 +1.1 854,972 + IAI47_04085 0.76 -0.0 854,973 - IAI47_04085 0.76 +0.9 854,984 + IAI47_04085 0.77 -1.5 854,985 - IAI47_04085 0.77 +1.5 854,985 - IAI47_04085 0.77 +1.3 855,002 + IAI47_04085 0.78 +0.7 855,003 - IAI47_04085 0.78 -0.5 855,047 + IAI47_04085 0.81 +0.3 855,169 + +0.3 855,169 + -0.3 855,169 + +0.4 855,170 - +0.3 855,170 - +1.9 855,170 - -0.9 855,189 + -0.7 855,189 + +0.1 855,190 - -0.1 855,190 - -0.9 855,237 + +0.6 855,237 + +0.5 855,237 + +0.6 855,237 + +0.8 855,237 + +1.8 855,237 + +0.3 855,237 + -0.1 855,237 + +0.3 855,238 - +0.0 855,238 - +0.2 855,238 - +0.3 855,238 - +0.1 855,238 - -1.6 855,238 - -1.9 855,297 + -0.2 855,297 + -1.6 855,297 + +0.8 855,298 - +1.0 855,298 - -0.7 855,298 - -0.0 855,298 - +0.3 855,298 - -0.6 855,345 + +0.3 855,346 - -0.5 855,346 - +0.7 855,361 + -1.6 855,362 - +0.3 855,362 - -0.5 855,435 + +0.5 855,748 + IAI47_04090 0.33 -0.1 855,749 - IAI47_04090 0.33 -1.3 855,757 + IAI47_04090 0.34 -1.0 855,757 + IAI47_04090 0.34 -0.7 855,758 - IAI47_04090 0.34 -0.2 855,758 - IAI47_04090 0.34 -0.3 855,758 - IAI47_04090 0.34 +0.6 855,758 - IAI47_04090 0.34 -1.6 855,758 - IAI47_04090 0.34 +0.5 855,775 - IAI47_04090 0.35 -0.2 855,791 - IAI47_04090 0.36 -0.1 855,823 + IAI47_04090 0.39 +0.5 855,823 + IAI47_04090 0.39 +0.5 855,839 + IAI47_04090 0.40 +0.3 855,866 + IAI47_04090 0.42 -0.4 855,867 - IAI47_04090 0.42 +1.8 855,867 - IAI47_04090 0.42 +0.5 855,887 - IAI47_04090 0.43 +1.0 855,887 - IAI47_04090 0.43 +1.0 855,895 + IAI47_04090 0.44 -0.5 855,895 + IAI47_04090 0.44 +0.3 855,896 - IAI47_04090 0.44 +0.1 855,896 - IAI47_04090 0.44 +1.3 855,908 - IAI47_04090 0.45 -0.9 855,993 + IAI47_04090 0.51 +0.1 856,056 + IAI47_04090 0.56 +0.3 856,056 + IAI47_04090 0.56 +0.1 856,056 + IAI47_04090 0.56 +0.3 856,056 + IAI47_04090 0.56 +1.3 856,056 + IAI47_04090 0.56 -1.1 856,057 - IAI47_04090 0.56 -0.1 856,057 - IAI47_04090 0.56 -1.4 856,057 - IAI47_04090 0.56 +0.0 856,060 + IAI47_04090 0.56 +0.5 856,073 - IAI47_04090 0.57 +1.6 856,105 + IAI47_04090 0.60 -0.4 856,105 + IAI47_04090 0.60 -0.0 856,106 - IAI47_04090 0.60 -1.2 856,167 + IAI47_04090 0.64 +0.1 856,167 + IAI47_04090 0.64 +0.3 856,167 + IAI47_04090 0.64 -0.4 856,167 + IAI47_04090 0.64 +0.8 856,168 - IAI47_04090 0.64 +0.3 856,168 - IAI47_04090 0.64 -0.0 856,168 - IAI47_04090 0.64 -0.0 856,200 + IAI47_04090 0.67 +1.7 856,201 - IAI47_04090 0.67 -0.2 856,354 - IAI47_04090 0.78 -1.2 856,354 - IAI47_04090 0.78 -0.2 856,398 + IAI47_04090 0.82 -0.7 856,399 - IAI47_04090 0.82 +0.3 856,399 - IAI47_04090 0.82 +0.7 856,455 + IAI47_04090 0.86 -0.7 856,455 + IAI47_04090 0.86 +2.0 856,464 + IAI47_04090 0.87 -0.7 856,464 + IAI47_04090 0.87 +0.3 856,499 + IAI47_04090 0.89 +0.0 856,510 - +0.3 856,541 - +0.3 856,592 + -0.7 856,617 + -0.1 856,618 - -1.3 856,692 + +1.7 856,692 + -0.3 856,692 + +0.7 856,692 + +1.0 856,692 + +0.7 856,693 - +0.7 856,693 - -0.7 856,862 + IAI47_04095 0.23 +0.3 856,863 - IAI47_04095 0.23 +1.4 856,938 + IAI47_04095 0.33 -0.5 856,938 + IAI47_04095 0.33 -0.2 856,938 + IAI47_04095 0.33 +0.3 856,939 - IAI47_04095 0.33 +1.6 856,939 - IAI47_04095 0.33 +0.7 856,939 - IAI47_04095 0.33 +0.6 856,963 - IAI47_04095 0.36 +0.9 857,080 + IAI47_04095 0.51 +0.3 857,081 - IAI47_04095 0.51 -0.3 857,081 - IAI47_04095 0.51 -0.6 857,081 - IAI47_04095 0.51 +0.3 857,081 - IAI47_04095 0.51 -0.9 857,081 - IAI47_04095 0.51 -0.7 857,081 - IAI47_04095 0.51 +1.3 857,081 - IAI47_04095 0.51 -2.7 857,081 - IAI47_04095 0.51 +0.5 857,098 + IAI47_04095 0.53 +1.0 857,098 + IAI47_04095 0.53 -0.2 857,098 + IAI47_04095 0.53 -0.2 857,099 - IAI47_04095 0.53 -0.2 857,243 - IAI47_04095 0.72 -0.7 857,283 + IAI47_04095 0.77 +0.7 857,284 - IAI47_04095 0.77 -0.7 857,342 + IAI47_04095 0.85 +0.5 857,362 + IAI47_04095 0.88 -1.3 857,435 + -1.2 857,449 - +1.1 857,449 - -1.0 857,449 - +0.3 857,463 + -0.5 857,464 - -0.3 857,491 + -1.2 857,556 + -1.2 857,557 - -0.3 857,557 - +1.7 857,596 + IAI47_04100 0.13 +0.5 857,597 - IAI47_04100 0.14 +0.0
Or see this region's nucleotide sequence