Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03275 and IAI47_03280 are separated by 159 nucleotides IAI47_03280 and IAI47_03285 are separated by 129 nucleotides
IAI47_03275: IAI47_03275 - EAL domain-containing protein, at 679,559 to 681,643
_03275
IAI47_03280: IAI47_03280 - EAL domain-containing protein, at 681,803 to 683,947
_03280
IAI47_03285: IAI47_03285 - PLP-dependent aminotransferase family protein, at 684,077 to 685,480
_03285
Position (kb) 681
682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.909 kb on + strand, within IAI47_03275 at 680.909 kb on + strand, within IAI47_03275 at 680.943 kb on + strand, within IAI47_03275 at 680.944 kb on - strand, within IAI47_03275 at 680.950 kb on - strand, within IAI47_03275 at 681.097 kb on + strand, within IAI47_03275 at 681.097 kb on + strand, within IAI47_03275 at 681.097 kb on + strand, within IAI47_03275 at 681.098 kb on - strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.277 kb on + strand, within IAI47_03275 at 681.278 kb on - strand, within IAI47_03275 at 681.278 kb on - strand, within IAI47_03275 at 681.320 kb on - strand, within IAI47_03275 at 681.320 kb on - strand, within IAI47_03275 at 681.320 kb on - strand, within IAI47_03275 at 681.397 kb on + strand, within IAI47_03275 at 681.397 kb on + strand, within IAI47_03275 at 681.398 kb on - strand, within IAI47_03275 at 681.400 kb on + strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.401 kb on - strand, within IAI47_03275 at 681.469 kb on + strand at 681.554 kb on + strand at 681.554 kb on + strand at 681.554 kb on + strand at 681.555 kb on - strand at 681.555 kb on - strand at 681.555 kb on - strand at 681.588 kb on + strand at 681.588 kb on + strand at 681.588 kb on + strand at 681.588 kb on + strand at 681.588 kb on + strand at 681.665 kb on + strand at 681.665 kb on + strand at 681.667 kb on + strand at 681.736 kb on - strand at 681.739 kb on + strand at 681.739 kb on + strand at 681.740 kb on - strand at 681.740 kb on - strand at 681.766 kb on - strand at 681.766 kb on - strand at 681.770 kb on - strand at 681.770 kb on - strand at 681.770 kb on - strand at 681.770 kb on - strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.802 kb on + strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.803 kb on - strand at 681.807 kb on + strand at 681.807 kb on + strand at 681.807 kb on + strand at 681.807 kb on + strand at 681.807 kb on + strand at 681.807 kb on + strand at 681.808 kb on - strand at 681.818 kb on + strand at 681.819 kb on - strand at 681.819 kb on - strand at 681.819 kb on - strand at 681.829 kb on + strand at 681.829 kb on + strand at 681.871 kb on + strand at 681.871 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.879 kb on + strand at 681.880 kb on - strand at 681.880 kb on - strand at 681.880 kb on - strand at 681.883 kb on + strand at 681.883 kb on + strand at 681.884 kb on - strand at 681.884 kb on - strand at 681.884 kb on - strand at 681.982 kb on + strand at 681.982 kb on + strand at 681.983 kb on - strand at 682.022 kb on + strand, within IAI47_03280 at 682.022 kb on + strand, within IAI47_03280 at 682.023 kb on - strand, within IAI47_03280 at 682.023 kb on - strand, within IAI47_03280 at 682.074 kb on + strand, within IAI47_03280 at 682.075 kb on - strand, within IAI47_03280 at 682.169 kb on + strand, within IAI47_03280 at 682.169 kb on + strand, within IAI47_03280 at 682.170 kb on - strand, within IAI47_03280 at 682.170 kb on - strand, within IAI47_03280 at 682.170 kb on - strand, within IAI47_03280 at 682.170 kb on - strand, within IAI47_03280 at 682.171 kb on + strand, within IAI47_03280 at 682.171 kb on + strand, within IAI47_03280 at 682.171 kb on + strand, within IAI47_03280 at 682.172 kb on - strand, within IAI47_03280 at 682.227 kb on + strand, within IAI47_03280 at 682.285 kb on + strand, within IAI47_03280 at 682.285 kb on + strand, within IAI47_03280 at 682.286 kb on - strand, within IAI47_03280 at 682.327 kb on + strand, within IAI47_03280 at 682.328 kb on - strand, within IAI47_03280 at 682.328 kb on - strand, within IAI47_03280 at 682.328 kb on - strand, within IAI47_03280 at 682.342 kb on - strand, within IAI47_03280 at 682.373 kb on + strand, within IAI47_03280 at 682.373 kb on + strand, within IAI47_03280 at 682.374 kb on - strand, within IAI47_03280 at 682.374 kb on - strand, within IAI47_03280 at 682.438 kb on + strand, within IAI47_03280 at 682.438 kb on + strand, within IAI47_03280 at 682.438 kb on + strand, within IAI47_03280 at 682.438 kb on + strand, within IAI47_03280 at 682.439 kb on - strand, within IAI47_03280 at 682.439 kb on - strand, within IAI47_03280 at 682.439 kb on - strand, within IAI47_03280 at 682.464 kb on + strand, within IAI47_03280 at 682.465 kb on - strand, within IAI47_03280 at 682.471 kb on + strand, within IAI47_03280 at 682.471 kb on + strand, within IAI47_03280 at 682.471 kb on + strand, within IAI47_03280 at 682.472 kb on - strand, within IAI47_03280 at 682.472 kb on - strand, within IAI47_03280 at 682.489 kb on + strand, within IAI47_03280 at 682.489 kb on + strand, within IAI47_03280 at 682.490 kb on - strand, within IAI47_03280 at 682.696 kb on + strand, within IAI47_03280 at 682.697 kb on - strand, within IAI47_03280 at 682.715 kb on - strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.802 kb on + strand, within IAI47_03280 at 682.805 kb on + strand, within IAI47_03280 at 682.805 kb on + strand, within IAI47_03280 at 682.805 kb on + strand, within IAI47_03280 at 682.805 kb on + strand, within IAI47_03280 at 682.805 kb on + strand, within IAI47_03280 at 682.806 kb on - strand, within IAI47_03280 at 682.839 kb on + strand, within IAI47_03280 at 682.839 kb on + strand, within IAI47_03280 at 682.839 kb on + strand, within IAI47_03280 at 682.839 kb on + strand, within IAI47_03280 at 682.839 kb on + strand, within IAI47_03280 at 682.840 kb on - strand, within IAI47_03280 at 682.840 kb on - strand, within IAI47_03280 at 682.921 kb on + strand, within IAI47_03280 at 682.922 kb on - strand, within IAI47_03280 at 682.922 kb on - strand, within IAI47_03280 at 682.931 kb on + strand, within IAI47_03280 at 682.931 kb on + strand, within IAI47_03280 at 682.932 kb on - strand, within IAI47_03280 at 682.932 kb on - strand, within IAI47_03280 at 682.932 kb on - strand, within IAI47_03280 at 682.970 kb on + strand, within IAI47_03280 at 682.970 kb on + strand, within IAI47_03280 at 682.970 kb on + strand, within IAI47_03280 at 682.971 kb on - strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.027 kb on + strand, within IAI47_03280 at 683.028 kb on - strand, within IAI47_03280 at 683.028 kb on - strand, within IAI47_03280 at 683.028 kb on - strand, within IAI47_03280 at 683.028 kb on - strand, within IAI47_03280 at 683.028 kb on - strand, within IAI47_03280 at 683.042 kb on - strand, within IAI47_03280 at 683.058 kb on - strand, within IAI47_03280 at 683.058 kb on - strand, within IAI47_03280 at 683.159 kb on + strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.160 kb on - strand, within IAI47_03280 at 683.171 kb on + strand, within IAI47_03280 at 683.314 kb on + strand, within IAI47_03280 at 683.314 kb on + strand, within IAI47_03280 at 683.418 kb on + strand, within IAI47_03280 at 683.419 kb on - strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.430 kb on + strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.431 kb on - strand, within IAI47_03280 at 683.525 kb on - strand, within IAI47_03280 at 683.525 kb on - strand, within IAI47_03280 at 683.601 kb on - strand, within IAI47_03280 at 683.629 kb on + strand, within IAI47_03280 at 683.629 kb on + strand, within IAI47_03280 at 683.630 kb on - strand, within IAI47_03280 at 683.791 kb on + strand at 683.791 kb on + strand at 683.791 kb on + strand at 683.792 kb on - strand at 683.792 kb on - strand at 683.792 kb on - strand at 683.792 kb on - strand at 683.792 kb on - strand at 683.964 kb on + strand at 683.964 kb on + strand at 683.964 kb on + strand at 683.964 kb on + strand at 683.964 kb on + strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.965 kb on - strand at 683.988 kb on + strand at 683.988 kb on + strand at 683.989 kb on - strand at 684.028 kb on + strand at 684.029 kb on - strand at 684.047 kb on + strand at 684.048 kb on - strand at 684.056 kb on + strand at 684.057 kb on - strand at 684.086 kb on + strand at 684.086 kb on + strand at 684.120 kb on + strand at 684.120 kb on + strand at 684.120 kb on + strand at 684.121 kb on - strand at 684.153 kb on + strand at 684.153 kb on + strand at 684.215 kb on + strand at 684.215 kb on + strand at 684.215 kb on + strand at 684.215 kb on + strand at 684.215 kb on + strand at 684.216 kb on - strand at 684.216 kb on - strand at 684.216 kb on - strand at 684.267 kb on - strand, within IAI47_03285 at 684.267 kb on - strand, within IAI47_03285 at 684.267 kb on - strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.269 kb on + strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.270 kb on - strand, within IAI47_03285 at 684.331 kb on + strand, within IAI47_03285 at 684.331 kb on + strand, within IAI47_03285 at 684.331 kb on + strand, within IAI47_03285 at 684.332 kb on - strand, within IAI47_03285 at 684.332 kb on - strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.354 kb on + strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.355 kb on - strand, within IAI47_03285 at 684.540 kb on - strand, within IAI47_03285 at 684.540 kb on - strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.556 kb on + strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.557 kb on - strand, within IAI47_03285 at 684.644 kb on + strand, within IAI47_03285 at 684.644 kb on + strand, within IAI47_03285 at 684.645 kb on - strand, within IAI47_03285 at 684.652 kb on - strand, within IAI47_03285 at 684.672 kb on - strand, within IAI47_03285 at 684.837 kb on + strand, within IAI47_03285 at 684.837 kb on + strand, within IAI47_03285 at 684.838 kb on - strand, within IAI47_03285 at 684.838 kb on - strand, within IAI47_03285 at 684.851 kb on - strand, within IAI47_03285 at 684.851 kb on - strand, within IAI47_03285 at 684.870 kb on + strand, within IAI47_03285 at 684.870 kb on + strand, within IAI47_03285 at 684.871 kb on - strand, within IAI47_03285 at 684.871 kb on - strand, within IAI47_03285 at 684.911 kb on + strand, within IAI47_03285 at 684.911 kb on + strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285 at 684.912 kb on - strand, within IAI47_03285
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 680,909 + IAI47_03275 0.65 -0.1 680,909 + IAI47_03275 0.65 -0.4 680,943 + IAI47_03275 0.66 -0.3 680,944 - IAI47_03275 0.66 -0.1 680,950 - IAI47_03275 0.67 +0.3 681,097 + IAI47_03275 0.74 +0.4 681,097 + IAI47_03275 0.74 -1.6 681,097 + IAI47_03275 0.74 -0.3 681,098 - IAI47_03275 0.74 -1.5 681,277 + IAI47_03275 0.82 -0.6 681,277 + IAI47_03275 0.82 -0.1 681,277 + IAI47_03275 0.82 +0.8 681,277 + IAI47_03275 0.82 -0.7 681,277 + IAI47_03275 0.82 +3.1 681,277 + IAI47_03275 0.82 +0.0 681,278 - IAI47_03275 0.82 +0.8 681,278 - IAI47_03275 0.82 +1.6 681,320 - IAI47_03275 0.84 +1.9 681,320 - IAI47_03275 0.84 +0.7 681,320 - IAI47_03275 0.84 +1.3 681,397 + IAI47_03275 0.88 +1.3 681,397 + IAI47_03275 0.88 +2.3 681,398 - IAI47_03275 0.88 -0.7 681,400 + IAI47_03275 0.88 -0.0 681,401 - IAI47_03275 0.88 -1.1 681,401 - IAI47_03275 0.88 +1.1 681,401 - IAI47_03275 0.88 -1.7 681,401 - IAI47_03275 0.88 +0.1 681,401 - IAI47_03275 0.88 +0.1 681,401 - IAI47_03275 0.88 +0.0 681,401 - IAI47_03275 0.88 +1.7 681,469 + -1.2 681,554 + +0.3 681,554 + +1.0 681,554 + -2.0 681,555 - +0.3 681,555 - -0.1 681,555 - +1.3 681,588 + +1.3 681,588 + +0.4 681,588 + -3.2 681,588 + +0.3 681,588 + +0.0 681,665 + +0.7 681,665 + -0.2 681,667 + -0.6 681,736 - -0.2 681,739 + +0.6 681,739 + +0.4 681,740 - +0.8 681,740 - -1.4 681,766 - -1.1 681,766 - -0.7 681,770 - +0.6 681,770 - -1.5 681,770 - -0.3 681,770 - -0.9 681,802 + -0.3 681,802 + -1.0 681,802 + +0.1 681,802 + -1.5 681,802 + +0.3 681,802 + +0.4 681,802 + +0.3 681,802 + +2.6 681,802 + +0.7 681,802 + -0.2 681,802 + -1.0 681,803 - -0.1 681,803 - -1.3 681,803 - -0.1 681,803 - -0.1 681,803 - +0.4 681,803 - -1.9 681,803 - -0.2 681,803 - +0.5 681,807 + +0.5 681,807 + +1.0 681,807 + +0.3 681,807 + +0.9 681,807 + -0.2 681,807 + -0.5 681,808 - +3.0 681,818 + +0.8 681,819 - -1.5 681,819 - -0.7 681,819 - -0.3 681,829 + -0.0 681,829 + -0.0 681,871 + +0.4 681,871 + +1.3 681,879 + +1.4 681,879 + +0.3 681,879 + -0.9 681,879 + +0.1 681,879 + -0.8 681,879 + -1.0 681,879 + -0.2 681,879 + +0.3 681,879 + +0.9 681,880 - +0.4 681,880 - -0.7 681,880 - +0.4 681,883 + +0.7 681,883 + +0.3 681,884 - -1.0 681,884 - +0.2 681,884 - -1.5 681,982 + -0.5 681,982 + +0.0 681,983 - -0.7 682,022 + IAI47_03280 0.10 +0.3 682,022 + IAI47_03280 0.10 +0.5 682,023 - IAI47_03280 0.10 -0.5 682,023 - IAI47_03280 0.10 -0.7 682,074 + IAI47_03280 0.13 -0.2 682,075 - IAI47_03280 0.13 -0.7 682,169 + IAI47_03280 0.17 +0.9 682,169 + IAI47_03280 0.17 -0.3 682,170 - IAI47_03280 0.17 +0.1 682,170 - IAI47_03280 0.17 -0.0 682,170 - IAI47_03280 0.17 +0.4 682,170 - IAI47_03280 0.17 -1.0 682,171 + IAI47_03280 0.17 -0.7 682,171 + IAI47_03280 0.17 +0.6 682,171 + IAI47_03280 0.17 -0.4 682,172 - IAI47_03280 0.17 -0.2 682,227 + IAI47_03280 0.20 -0.1 682,285 + IAI47_03280 0.22 +0.3 682,285 + IAI47_03280 0.22 -0.3 682,286 - IAI47_03280 0.23 +0.6 682,327 + IAI47_03280 0.24 +0.1 682,328 - IAI47_03280 0.24 +0.8 682,328 - IAI47_03280 0.24 +0.2 682,328 - IAI47_03280 0.24 -0.0 682,342 - IAI47_03280 0.25 +1.3 682,373 + IAI47_03280 0.27 -0.5 682,373 + IAI47_03280 0.27 +0.3 682,374 - IAI47_03280 0.27 +0.1 682,374 - IAI47_03280 0.27 -0.6 682,438 + IAI47_03280 0.30 -0.5 682,438 + IAI47_03280 0.30 -0.3 682,438 + IAI47_03280 0.30 -0.7 682,438 + IAI47_03280 0.30 -0.2 682,439 - IAI47_03280 0.30 +0.1 682,439 - IAI47_03280 0.30 +1.4 682,439 - IAI47_03280 0.30 -0.4 682,464 + IAI47_03280 0.31 -0.0 682,465 - IAI47_03280 0.31 -1.6 682,471 + IAI47_03280 0.31 +0.3 682,471 + IAI47_03280 0.31 +0.1 682,471 + IAI47_03280 0.31 -0.4 682,472 - IAI47_03280 0.31 +0.9 682,472 - IAI47_03280 0.31 -0.7 682,489 + IAI47_03280 0.32 -0.1 682,489 + IAI47_03280 0.32 -0.2 682,490 - IAI47_03280 0.32 +0.6 682,696 + IAI47_03280 0.42 +0.3 682,697 - IAI47_03280 0.42 +0.3 682,715 - IAI47_03280 0.43 -0.6 682,802 + IAI47_03280 0.47 -0.1 682,802 + IAI47_03280 0.47 -0.3 682,802 + IAI47_03280 0.47 +0.7 682,802 + IAI47_03280 0.47 +0.5 682,802 + IAI47_03280 0.47 -0.5 682,802 + IAI47_03280 0.47 +0.4 682,805 + IAI47_03280 0.47 +0.3 682,805 + IAI47_03280 0.47 -0.3 682,805 + IAI47_03280 0.47 +0.5 682,805 + IAI47_03280 0.47 +1.3 682,805 + IAI47_03280 0.47 -1.3 682,806 - 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IAI47_03285 0.59 -0.5 684,912 - IAI47_03285 0.59 -1.0 684,912 - IAI47_03285 0.59 -0.0 684,912 - IAI47_03285 0.59 -2.3 684,912 - IAI47_03285 0.59 +0.3
Or see this region's nucleotide sequence