Strain Fitness in Pantoea sp. MT58 around IAI47_00385

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00380 and IAI47_00385 are separated by 534 nucleotidesIAI47_00385 and IAI47_00390 are separated by 82 nucleotidesIAI47_00390 and IAI47_00395 are separated by 221 nucleotides IAI47_00380: IAI47_00380 - multidrug transporter subunit MdtD, at 83,398 to 84,798 _00380 IAI47_00385: IAI47_00385 - 16S ribosomal RNA, at 85,333 to 86,879 _00385 IAI47_00390: IAI47_00390 - tRNA-Glu, at 86,962 to 87,036 _00390 IAI47_00395: IAI47_00395 - 23S ribosomal RNA, at 87,258 to 90,192 _00395 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.394 kb on + strand, within IAI47_00380at 84.419 kb on + strand, within IAI47_00380at 84.419 kb on + strand, within IAI47_00380at 84.419 kb on + strand, within IAI47_00380at 84.419 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.427 kb on + strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.428 kb on - strand, within IAI47_00380at 84.478 kb on + strand, within IAI47_00380at 84.478 kb on + strand, within IAI47_00380at 84.478 kb on + strand, within IAI47_00380at 84.479 kb on - strand, within IAI47_00380at 84.564 kb on + strand, within IAI47_00380at 84.564 kb on + strand, within IAI47_00380at 84.565 kb on - strand, within IAI47_00380at 84.565 kb on - strand, within IAI47_00380at 84.565 kb on - strand, within IAI47_00380at 84.621 kb on + strandat 84.621 kb on + strand, within IAI47_00380at 84.621 kb on + strand, within IAI47_00380at 84.621 kb on + strand, within IAI47_00380at 84.621 kb on + strand, within IAI47_00380at 84.621 kb on + strand, within IAI47_00380at 84.638 kb on + strand, within IAI47_00380at 84.638 kb on + strand, within IAI47_00380at 84.638 kb on + strand, within IAI47_00380at 84.639 kb on - strand, within IAI47_00380at 84.639 kb on - strand, within IAI47_00380at 84.639 kb on - strand, within IAI47_00380at 84.715 kb on + strandat 84.715 kb on + strandat 84.715 kb on + strandat 84.716 kb on - strandat 84.716 kb on - strandat 84.750 kb on + strandat 84.750 kb on + strandat 84.750 kb on + strandat 84.757 kb on + strandat 84.757 kb on + strandat 84.757 kb on + strandat 84.757 kb on + strandat 84.757 kb on + strandat 84.758 kb on - strandat 84.758 kb on - strandat 84.758 kb on - strandat 84.758 kb on - strandat 84.793 kb on + strandat 84.793 kb on + strandat 84.794 kb on - strandat 84.819 kb on - strandat 84.840 kb on + strandat 84.841 kb on - strandat 84.841 kb on - strandat 84.841 kb on - strandat 84.841 kb on - strandat 84.841 kb on - strandat 84.843 kb on + strandat 84.844 kb on - strandat 84.844 kb on - strandat 84.875 kb on + strandat 84.875 kb on + strandat 84.875 kb on + strandat 84.875 kb on + strandat 84.876 kb on - strandat 84.876 kb on - strandat 84.876 kb on - strandat 84.904 kb on + strandat 85.004 kb on - strandat 85.004 kb on - strandat 85.004 kb on - strandat 85.004 kb on - strandat 85.004 kb on - strandat 85.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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84,394 + IAI47_00380 0.71 +0.5
84,419 + IAI47_00380 0.73 +0.7
84,419 + IAI47_00380 0.73 -0.3
84,419 + IAI47_00380 0.73 +0.3
84,419 + IAI47_00380 0.73 -1.1
84,427 + IAI47_00380 0.73 -0.2
84,427 + IAI47_00380 0.73 +0.3
84,427 + IAI47_00380 0.73 -0.5
84,427 + IAI47_00380 0.73 +0.2
84,427 + IAI47_00380 0.73 +1.7
84,427 + IAI47_00380 0.73 +2.3
84,428 - IAI47_00380 0.74 +1.5
84,428 - IAI47_00380 0.74 -0.3
84,428 - IAI47_00380 0.74 +0.0
84,428 - IAI47_00380 0.74 +0.2
84,428 - IAI47_00380 0.74 +0.3
84,428 - IAI47_00380 0.74 +0.8
84,478 + IAI47_00380 0.77 +0.3
84,478 + IAI47_00380 0.77 -0.1
84,478 + IAI47_00380 0.77 -0.7
84,479 - IAI47_00380 0.77 -0.0
84,564 + IAI47_00380 0.83 +0.1
84,564 + IAI47_00380 0.83 -0.6
84,565 - IAI47_00380 0.83 +0.3
84,565 - IAI47_00380 0.83 +0.1
84,565 - IAI47_00380 0.83 +0.3
84,621 + +1.6
84,621 + IAI47_00380 0.87 +0.4
84,621 + IAI47_00380 0.87 +0.6
84,621 + IAI47_00380 0.87 -0.9
84,621 + IAI47_00380 0.87 -0.3
84,621 + IAI47_00380 0.87 -0.5
84,638 + IAI47_00380 0.89 +0.5
84,638 + IAI47_00380 0.89 -0.6
84,638 + IAI47_00380 0.89 -0.9
84,639 - IAI47_00380 0.89 -0.1
84,639 - IAI47_00380 0.89 +0.7
84,639 - IAI47_00380 0.89 +1.9
84,715 + +1.7
84,715 + +0.1
84,715 + +0.7
84,716 - +1.7
84,716 - +0.1
84,750 + +0.0
84,750 + +0.5
84,750 + +0.4
84,757 + -0.5
84,757 + +0.0
84,757 + +0.9
84,757 + -0.5
84,757 + -0.8
84,758 - -0.1
84,758 - -1.5
84,758 - +1.0
84,758 - -0.3
84,793 + -1.7
84,793 + -0.7
84,794 - -0.0
84,819 - +1.3
84,840 + -0.1
84,841 - +0.0
84,841 - -0.6
84,841 - +0.7
84,841 - -0.9
84,841 - +0.3
84,843 + +0.7
84,844 - +0.7
84,844 - -0.9
84,875 + +1.6
84,875 + +0.4
84,875 + -0.9
84,875 + +0.7
84,876 - +0.1
84,876 - +0.4
84,876 - -0.3
84,904 + -1.9
85,004 - +1.1
85,004 - -0.8
85,004 - -0.7
85,004 - +0.3
85,004 - +0.7
85,006 - +0.9

Or see this region's nucleotide sequence