Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00240 and IAI47_00245 are separated by 154 nucleotides IAI47_00245 and IAI47_00250 are separated by 160 nucleotides IAI47_00250 and IAI47_00255 are separated by 24 nucleotides
IAI47_00240: IAI47_00240 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 52,125 to 53,954
_00240
IAI47_00245: IAI47_00245 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 54,109 to 55,479
_00245
IAI47_00250: IAI47_00250 - F0F1 ATP synthase subunit epsilon, at 55,640 to 56,059
_00250
IAI47_00255: IAI47_00255 - F0F1 ATP synthase subunit beta, at 56,084 to 57,481
_00255
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 53.973 kb on - strand at 53.973 kb on - strand at 53.973 kb on - strand at 53.973 kb on - strand at 53.973 kb on - strand at 53.973 kb on - strand at 53.973 kb on - strand at 54.042 kb on - strand at 54.042 kb on - strand at 54.042 kb on - strand at 54.042 kb on - strand at 54.056 kb on - strand at 54.057 kb on + strand at 54.057 kb on + strand at 54.057 kb on + strand at 54.057 kb on + strand at 54.057 kb on + strand at 54.058 kb on - strand at 54.058 kb on - strand at 54.058 kb on - strand at 54.058 kb on - strand at 54.058 kb on - strand at 55.513 kb on - strand at 55.513 kb on - strand at 55.513 kb on - strand at 55.513 kb on - strand at 55.535 kb on - strand at 55.535 kb on - strand at 55.535 kb on - strand at 55.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 53,973 - +0.6 53,973 - -1.2 53,973 - -0.5 53,973 - +1.3 53,973 - +0.8 53,973 - +0.1 53,973 - +3.3 54,042 - +1.1 54,042 - -0.7 54,042 - +0.3 54,042 - +1.3 54,056 - -1.0 54,057 + -1.3 54,057 + -1.9 54,057 + -2.0 54,057 + -1.7 54,057 + -2.9 54,058 - +1.7 54,058 - -1.6 54,058 - -0.3 54,058 - +0.9 54,058 - -1.7 55,513 - +0.4 55,513 - -0.4 55,513 - +1.6 55,513 - -2.3 55,535 - +0.6 55,535 - +0.3 55,535 - +0.0 55,535 - +0.9
Or see this region's nucleotide sequence