Strain Fitness in Pantoea sp. MT58 around IAI47_00240

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
51,242	+		IAI47_00235	0.31	-0.5
51,242	+		IAI47_00235	0.31	-0.6
51,242	+		IAI47_00235	0.31	-0.2
51,268	+		IAI47_00235	0.34	+0.4
51,268	+		IAI47_00235	0.34	-0.8
51,269	-		IAI47_00235	0.34	-0.7
51,269	-		IAI47_00235	0.34	+0.3
51,269	-		IAI47_00235	0.34	+0.8
51,287	+		IAI47_00235	0.36	+1.1
51,287	+		IAI47_00235	0.36	+0.9
51,287	+		IAI47_00235	0.36	-1.5
51,287	+		IAI47_00235	0.36	-0.6
51,292	+		IAI47_00235	0.36	-0.9
51,292	+		IAI47_00235	0.36	+0.3
51,293	-		IAI47_00235	0.36	-1.7
51,293	-		IAI47_00235	0.36	+0.9
51,298	+		IAI47_00235	0.37	-2.9
51,298	+		IAI47_00235	0.37	+1.3
51,299	-		IAI47_00235	0.37	+0.5
51,299	-		IAI47_00235	0.37	+0.3
51,307	+		IAI47_00235	0.37	+0.9
51,308	-		IAI47_00235	0.38	+0.3
51,308	-		IAI47_00235	0.38	+0.3
51,362	+		IAI47_00235	0.43	+1.3
51,443	-		IAI47_00235	0.50	+1.6
51,443	-		IAI47_00235	0.50	-0.8
51,574	+		IAI47_00235	0.63	-0.3
51,574	+		IAI47_00235	0.63	-0.7
51,574	+		IAI47_00235	0.63	+0.7
51,574	+		IAI47_00235	0.63	-0.2
51,574	+		IAI47_00235	0.63	-0.3
51,574	+		IAI47_00235	0.63	+0.3
51,575	-		IAI47_00235	0.63	+1.0
51,575	-		IAI47_00235	0.63	-0.8
51,575	-		IAI47_00235	0.63	-0.0
51,575	-		IAI47_00235	0.63	-1.3
51,578	+		IAI47_00235	0.63	-0.7
51,578	+		IAI47_00235	0.63	+0.1
51,578	+		IAI47_00235	0.63	-0.2
51,579	-		IAI47_00235	0.64	-1.7
51,579	-		IAI47_00235	0.64	-0.1
51,635	+		IAI47_00235	0.69	+2.0
51,636	-		IAI47_00235	0.69	-0.9
51,636	-		IAI47_00235	0.69	+0.1
51,636	-		IAI47_00235	0.69	-0.5
51,645	+		IAI47_00235	0.70	-0.1
51,646	-		IAI47_00235	0.70	+1.4
51,646	-		IAI47_00235	0.70	-0.2
51,787	+		IAI47_00235	0.83	-0.4
51,787	+		IAI47_00235	0.83	-0.3
51,787	+		IAI47_00235	0.83	+1.1
51,788	-		IAI47_00235	0.84	+0.3
51,816	-		IAI47_00235	0.86	+0.3
51,817	+		IAI47_00235	0.86	-0.1
51,818	-		IAI47_00235	0.86	+0.6
51,907	-				+0.3
51,945	-				-0.5
51,945	-				-0.5
51,945	-				-0.7
51,945	-				+0.7
51,945	-				-0.7
51,945	-				+0.8
51,999	+				-2.5
51,999	+				-0.7
52,000	-				+1.4
52,000	-				-0.5
52,003	-				+0.8
52,003	-				-0.0
52,003	-				+0.1
52,033	+				+0.6
52,033	+				-1.3
52,033	+				+0.1
52,034	-				-0.7
52,034	-				-1.3
52,066	+				+0.5
52,067	-				+0.1
52,067	-				+0.9
52,075	+				-0.0
52,075	+				-1.7
52,075	+				-0.7
52,075	+				+0.3
52,075	+				+0.4
52,075	+				+1.3
52,075	+				+0.3
52,075	+				+0.7
52,075	+				+1.6
52,076	-				-1.3
52,076	-				+0.9
52,076	-				-0.0
52,076	-				-0.9
52,076	-				-0.6
52,076	-				+1.2
52,076	-				-0.6
52,076	-				-0.1
52,076	-				+0.1
52,077	+				+0.1
52,077	+				-0.9
52,077	+				+1.6
52,078	-				+0.4
52,078	-				-0.7
52,078	-				+0.0
52,078	-				-0.7
52,078	-				+1.3
52,078	-				+1.9
52,078	-				-1.5
52,078	-				-0.4
52,078	-				-1.3
52,078	-				-0.9
52,126	+				+0.3
52,126	+				+0.0
52,127	-				-1.3
52,127	-				-0.5
52,127	-				-0.0
53,973	-				+0.6
53,973	-				-1.2
53,973	-				-0.5
53,973	-				+1.3
53,973	-				+0.8
53,973	-				+0.1
53,973	-				+3.3
54,042	-				+1.1
54,042	-				-0.7
54,042	-				+0.3
54,042	-				+1.3
54,056	-				-1.0
54,057	+				-1.3
54,057	+				-1.9
54,057	+				-2.0
54,057	+				-1.7
54,057	+				-2.9
54,058	-				+1.7
54,058	-				-1.6
54,058	-				-0.3
54,058	-				+0.9
54,058	-				-1.7