Strain Fitness in Pantoea sp. MT58 around IAI47_21455

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
29,904	+				-0.6
29,907	+				+0.7
29,907	+				-0.7
29,907	+				+0.7
29,907	+				-0.3
29,907	+				+0.6
29,907	+				-0.3
29,907	+				+1.1
29,907	+				-0.0
29,907	+				+0.4
29,907	+				+1.1
29,907	+				-0.6
29,908	-				+1.6
29,908	-				-0.9
29,908	-				-0.5
29,908	-				+0.1
29,908	-				+1.2
29,908	-				-0.2
29,911	+				+2.6
29,913	+				-1.8
29,913	+				-0.8
29,913	+				-0.8
29,913	+				-0.8
29,913	+				+0.7
29,913	+				+1.8
29,914	-				+0.2
29,914	-				-1.0
29,917	-				-1.8
29,917	-				+1.0
29,948	+				+0.5
29,949	-				+0.3
29,975	-				-0.1
30,036	+				+0.2
30,037	-				+1.2
30,039	+				+1.4
30,039	+				-0.1
30,039	+				-0.6
30,039	+				-1.3
30,040	-				+0.5
30,040	-				+0.1
30,040	-				-0.5
30,040	-				-0.2
30,040	-				-0.1
30,040	-				-0.5
30,056	+				-0.5
30,066	+				+1.7
30,067	-				+1.4
30,067	-				-0.6
30,070	+				-0.1
30,070	+				+0.9
30,070	+				+0.8
30,071	-				-1.3
30,071	-				-0.3
30,071	-				-0.8
30,071	-				+0.2
30,085	+		IAI47_21450	0.11	-0.2
30,086	-		IAI47_21450	0.12	+1.2
30,225	+				+1.8
30,225	+				+0.1
30,226	-				+0.6
30,226	-				+0.7
30,226	-				+0.2
30,226	-				-1.0
30,226	-				-0.0
30,226	-				+1.4
30,241	+				+1.2
30,241	+				+0.2
30,242	-				-0.6
30,242	-				+0.9
30,242	-				+0.1
30,242	-				+0.7
30,242	-				+0.6
30,254	+				+0.2
30,254	+				+0.1
30,254	+				-1.3
30,254	+				-0.1
30,254	+				+1.1
30,255	-				+0.8
30,255	-				-0.6
30,255	-				-1.6
30,268	+				+0.0
30,268	+				+0.5
30,269	-				+0.2
30,269	-				+0.4
30,269	-				+0.5
30,269	-				+1.1
30,272	+				-0.0
30,273	-				-0.1
30,282	+				-0.3
30,283	-				-0.8
30,283	-				+1.8
30,286	+				+0.2
30,286	+				-0.1
30,286	+				+0.1
30,287	-				+0.2
30,287	-				+0.4
30,287	-				-0.6
30,304	+				-0.3
30,304	+				-0.1
30,304	+				-0.2
30,305	-				-1.5
30,305	-				+0.2
30,305	-				-1.5
30,305	-				-0.1
30,321	+				-1.3
30,350	+				+0.7
30,395	-				-0.0
30,416	-				-0.9
30,442	+				+1.8
30,449	-				+0.2
30,500	-				-2.3
30,546	+				-0.2
30,547	-				+0.8
30,556	+				+0.5
30,557	-				-2.1
30,557	-				+1.2
30,585	+				+0.7
30,585	+				-0.3
30,585	+				-0.0
30,590	+				+0.2
30,594	-				-1.3
30,594	-				+0.8
30,617	-				-0.5
30,743	-				-0.5
30,743	-				-1.0
30,755	-				+0.8
30,755	-				-1.9
30,790	+				+0.7
30,791	-				-1.2
30,791	-				+0.7
30,798	+				-0.2
30,810	+				-1.8
30,810	+				+0.1
30,811	-				-1.1
30,813	+				+0.5
30,816	+				+0.2
30,816	+				-0.5
30,816	+				+0.7
30,816	+				+2.8
30,817	-				+2.6
30,817	-				+2.6
30,817	-				+1.6
30,817	-				+0.8
30,817	-				+0.4
30,817	-				+0.5
30,817	-				-0.3
30,828	+				+0.4
30,828	+				-2.1
30,828	+				-0.8
30,828	+				+1.2
30,828	+				-0.6
30,829	-				+3.4
30,829	-				-0.3
30,871	-				-0.5
30,938	+				-0.3
30,938	+				-0.3
30,939	-				+0.7
30,939	-				-1.2
31,092	+		IAI47_21455	0.14	+0.0
31,092	+		IAI47_21455	0.14	+0.0
31,093	-		IAI47_21455	0.14	-0.9
31,093	-		IAI47_21455	0.14	+0.4
31,096	+		IAI47_21455	0.14	-2.3
31,096	+		IAI47_21455	0.14	+1.0
31,096	+		IAI47_21455	0.14	-0.3
31,096	+		IAI47_21455	0.14	+0.8
31,097	-		IAI47_21455	0.14	+2.8
31,097	-		IAI47_21455	0.14	+0.6
31,097	-		IAI47_21455	0.14	-0.1
31,097	-		IAI47_21455	0.14	+0.8
31,097	-		IAI47_21455	0.14	-0.2
31,097	-		IAI47_21455	0.14	+0.1
31,097	-		IAI47_21455	0.14	+0.5
31,097	-		IAI47_21455	0.14	-0.8
31,126	+		IAI47_21455	0.16	+0.7
31,126	+		IAI47_21455	0.16	+0.6
31,126	+		IAI47_21455	0.16	+0.2
31,126	+		IAI47_21455	0.16	+1.2
31,127	-		IAI47_21455	0.16	-0.6
31,127	-		IAI47_21455	0.16	-0.8
31,215	+		IAI47_21455	0.20	+0.1
31,215	+		IAI47_21455	0.20	-0.8
31,215	+		IAI47_21455	0.20	-0.6
31,215	+		IAI47_21455	0.20	+0.1
31,215	+		IAI47_21455	0.20	+0.5
31,216	-		IAI47_21455	0.20	-0.5
31,216	-		IAI47_21455	0.20	+1.1
31,216	-		IAI47_21455	0.20	+2.1
31,216	-		IAI47_21455	0.20	-0.6
31,216	-		IAI47_21455	0.20	+0.2
31,216	-		IAI47_21455	0.20	+0.5
31,216	-		IAI47_21455	0.20	+0.2
31,216	-		IAI47_21455	0.20	-0.1
31,216	-		IAI47_21455	0.20	+1.2
31,218	+		IAI47_21455	0.20	+0.8
31,279	-		IAI47_21455	0.23	+0.6
31,294	+		IAI47_21455	0.24	+0.6
31,294	+		IAI47_21455	0.24	-0.0
31,342	+		IAI47_21455	0.27	+0.2
31,342	+		IAI47_21455	0.27	+0.4
31,342	+		IAI47_21455	0.27	-0.7
31,343	-		IAI47_21455	0.27	-0.0
31,392	+		IAI47_21455	0.29	-0.3
31,399	-		IAI47_21455	0.29	+2.1
31,423	-		IAI47_21455	0.31	-0.2
31,458	+		IAI47_21455	0.32	-0.6
31,458	+		IAI47_21455	0.32	-0.3
31,458	+		IAI47_21455	0.32	+0.7
31,458	+		IAI47_21455	0.32	+0.1
31,458	+		IAI47_21455	0.32	+1.0
31,459	-		IAI47_21455	0.33	+0.6
31,459	-		IAI47_21455	0.33	+0.6
31,459	-		IAI47_21455	0.33	+0.4
31,459	-		IAI47_21455	0.33	-0.6
31,459	-		IAI47_21455	0.33	-0.0
31,459	-		IAI47_21455	0.33	-0.8
31,459	-		IAI47_21455	0.33	+1.2
31,459	-		IAI47_21455	0.33	+1.0
31,515	+		IAI47_21455	0.35	-1.0
31,585	-		IAI47_21455	0.39	+0.2
31,635	+		IAI47_21455	0.41	+0.8
31,635	+		IAI47_21455	0.41	+0.8
31,635	+		IAI47_21455	0.41	+0.8
31,635	+		IAI47_21455	0.41	-1.8
31,635	+		IAI47_21455	0.41	-0.6
31,635	+		IAI47_21455	0.41	+0.2
31,635	+		IAI47_21455	0.41	+0.0
31,636	-		IAI47_21455	0.41	-0.3
31,636	-		IAI47_21455	0.41	-1.5
31,636	-		IAI47_21455	0.41	+1.4
31,636	-		IAI47_21455	0.41	-0.0
31,706	-		IAI47_21455	0.45	-0.1
31,706	-		IAI47_21455	0.45	+0.2
31,706	-		IAI47_21455	0.45	+0.9
31,840	-		IAI47_21455	0.52	-0.8
31,884	+		IAI47_21455	0.54	+0.6
31,884	+		IAI47_21455	0.54	+0.1
31,885	-		IAI47_21455	0.54	+1.8
31,911	+		IAI47_21455	0.55	+0.1
31,911	+		IAI47_21455	0.55	+1.1
31,911	+		IAI47_21455	0.55	+1.0
31,911	+		IAI47_21455	0.55	-0.4
31,912	-		IAI47_21455	0.55	-0.9
31,912	-		IAI47_21455	0.55	-0.6
31,912	-		IAI47_21455	0.55	-0.8
32,022	+		IAI47_21455	0.61	-0.3
32,023	-		IAI47_21455	0.61	-0.2
32,023	-		IAI47_21455	0.61	+0.7
32,023	-		IAI47_21455	0.61	-0.8
32,062	+		IAI47_21455	0.63	-2.8
32,083	+		IAI47_21455	0.64	+0.2
32,083	+		IAI47_21455	0.64	+0.8
32,083	+		IAI47_21455	0.64	-0.2
32,084	-		IAI47_21455	0.64	-0.8
32,117	+		IAI47_21455	0.66	-2.3
32,124	+		IAI47_21455	0.66	+1.0
32,124	+		IAI47_21455	0.66	+0.4
32,124	+		IAI47_21455	0.66	-0.4
32,125	-		IAI47_21455	0.66	-0.5
32,125	-		IAI47_21455	0.66	+0.7
32,151	+		IAI47_21455	0.68	-0.2
32,152	-		IAI47_21455	0.68	-0.8
32,158	+		IAI47_21455	0.68	+0.2
32,158	+		IAI47_21455	0.68	-0.8
32,158	+		IAI47_21455	0.68	+0.2
32,158	+		IAI47_21455	0.68	+0.8
32,159	-		IAI47_21455	0.68	-0.5
32,159	-		IAI47_21455	0.68	+0.7
32,159	-		IAI47_21455	0.68	+1.9
32,159	-		IAI47_21455	0.68	+1.3
32,159	-		IAI47_21455	0.68	+0.8
32,259	+		IAI47_21455	0.73	+0.7
32,259	+		IAI47_21455	0.73	+0.2
32,259	+		IAI47_21455	0.73	+0.4
32,260	-		IAI47_21455	0.73	+0.6
32,260	-		IAI47_21455	0.73	+0.5
32,262	+		IAI47_21455	0.73	+0.4
32,262	+		IAI47_21455	0.73	-0.2
32,263	-		IAI47_21455	0.73	+0.2
32,263	-		IAI47_21455	0.73	+1.2
32,358	+		IAI47_21455	0.78	-0.3
32,359	-		IAI47_21455	0.78	-0.5
32,376	+		IAI47_21455	0.79	-0.3
32,377	-		IAI47_21455	0.79	+0.1
32,377	-		IAI47_21455	0.79	+1.4
32,377	-		IAI47_21455	0.79	-0.2
32,377	-		IAI47_21455	0.79	+0.2
32,418	-		IAI47_21455	0.81	-1.3
32,524	-		IAI47_21455	0.86	+1.1
32,524	-		IAI47_21455	0.86	+1.1
32,614	-				+1.6
32,614	-				-0.5
32,629	-				+0.6
32,756	+				+1.8
32,756	+				+0.8
32,781	+				+0.8
32,793	+				+0.6
32,794	-				+1.2
32,801	+				-0.3
32,802	-				+0.6
32,823	+				-2.1
32,823	+				+1.6
32,823	+				-0.8
32,824	-				-0.4
32,860	+				-1.3
32,860	+				+1.1
32,860	+				-1.8
32,860	+				+1.3
32,860	+				-1.2
32,861	-				+0.2
32,861	-				+1.0
32,861	-				-0.3
32,890	+				+0.2
32,890	+				-0.6
32,890	+				-0.5
32,890	+				-0.8
32,891	-				+0.1
32,891	-				-0.3
32,891	-				-1.9
32,891	-				-0.8
32,891	-				-1.8
32,903	+				-1.3
32,903	+				+0.5
32,910	+				-0.5
32,910	+				-2.1
32,911	-				-0.8
32,946	+				-1.1
32,946	+				-1.0
32,946	+				+0.2
32,946	+				-1.0
32,946	+				-0.2
32,946	+				+0.0
32,947	-				-1.8
32,947	-				-1.0
32,947	-				-1.6
32,947	-				-1.2
32,952	+				+0.8
32,952	+				+0.0
32,952	+				-0.3
32,952	+				+0.2
32,952	+				+1.2
32,952	+				-0.6
32,952	+				-0.4
32,953	-				-1.9
32,953	-				-0.8
32,953	-				-0.5
32,953	-				-0.8
32,953	-				-0.8
33,000	+		IAI47_21460	0.10	+0.1
33,000	+		IAI47_21460	0.10	-1.3
33,000	+		IAI47_21460	0.10	-1.3
33,001	-		IAI47_21460	0.10	-0.8
33,085	+		IAI47_21460	0.19	+0.2
33,085	+		IAI47_21460	0.19	+0.2
33,085	+		IAI47_21460	0.19	-0.1
33,085	+		IAI47_21460	0.19	+0.8
33,085	+		IAI47_21460	0.19	-0.4
33,085	+		IAI47_21460	0.19	-0.8
33,085	+		IAI47_21460	0.19	-0.6
33,086	-		IAI47_21460	0.19	-0.5
33,086	-		IAI47_21460	0.19	+0.6
33,086	-		IAI47_21460	0.19	+0.8
33,126	-		IAI47_21460	0.23	+0.6
33,126	-		IAI47_21460	0.23	+0.2
33,151	+		IAI47_21460	0.25	-0.3
33,152	-		IAI47_21460	0.25	-0.8
33,197	+		IAI47_21460	0.30	-1.5
33,197	+		IAI47_21460	0.30	+0.7
33,197	+		IAI47_21460	0.30	-0.8
33,197	+		IAI47_21460	0.30	-0.8
33,198	-		IAI47_21460	0.30	+1.6
33,198	-		IAI47_21460	0.30	-0.3
33,198	-		IAI47_21460	0.30	+1.8
33,198	-		IAI47_21460	0.30	+1.0
33,200	+		IAI47_21460	0.30	-1.2
33,215	+		IAI47_21460	0.31	-0.3
33,215	+		IAI47_21460	0.31	-0.2
33,322	+		IAI47_21460	0.42	-1.1
33,322	+		IAI47_21460	0.42	-1.8
33,322	+		IAI47_21460	0.42	-0.8
33,322	+		IAI47_21460	0.42	-0.8
33,322	+		IAI47_21460	0.42	-2.1
33,322	+		IAI47_21460	0.42	-1.3
33,323	-		IAI47_21460	0.42	-0.6
33,323	-		IAI47_21460	0.42	-1.2
33,323	-		IAI47_21460	0.42	-0.2
33,323	-		IAI47_21460	0.42	+0.2
33,323	-		IAI47_21460	0.42	+1.6
33,323	-		IAI47_21460	0.42	-0.3
33,353	+		IAI47_21460	0.45	+0.2
33,353	+		IAI47_21460	0.45	-0.6
33,353	+		IAI47_21460	0.45	-3.2
33,354	-		IAI47_21460	0.45	-0.5
33,383	+		IAI47_21460	0.48	+1.5
33,383	+		IAI47_21460	0.48	-2.3
33,384	-		IAI47_21460	0.48	-0.3
33,384	-		IAI47_21460	0.48	+1.2
33,384	-		IAI47_21460	0.48	-1.6
33,437	+		IAI47_21460	0.53	-2.1
33,437	+		IAI47_21460	0.53	+1.2
33,437	+		IAI47_21460	0.53	-0.6
33,437	+		IAI47_21460	0.53	-0.8
33,437	+		IAI47_21460	0.53	-1.5
33,437	+		IAI47_21460	0.53	+0.2
33,437	+		IAI47_21460	0.53	+0.6
33,437	+		IAI47_21460	0.53	+0.7
33,438	-		IAI47_21460	0.53	-1.1
33,438	-		IAI47_21460	0.53	+1.0
33,438	-		IAI47_21460	0.53	-1.5
33,438	-		IAI47_21460	0.53	-2.3
33,500	+		IAI47_21460	0.59	-0.8
33,500	+		IAI47_21460	0.59	-0.8
33,500	+		IAI47_21460	0.59	+0.1
33,500	+		IAI47_21460	0.59	-0.9
33,500	+		IAI47_21460	0.59	-1.1
33,500	+		IAI47_21460	0.59	+0.7
33,500	+		IAI47_21460	0.59	-0.8
33,500	+		IAI47_21460	0.59	+0.1
33,501	-		IAI47_21460	0.60	-1.7
33,501	-		IAI47_21460	0.60	-0.5
33,634	-		IAI47_21460	0.73	-1.5
33,634	-		IAI47_21460	0.73	-0.2