Strain Fitness in Pantoea sp. MT58 around IAI47_19450

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
118,246	-		IAI47_19445	0.16	+0.4
118,246	-		IAI47_19445	0.16	-1.3
118,254	+		IAI47_19445	0.16	+0.8
118,254	+		IAI47_19445	0.16	-1.0
118,255	-		IAI47_19445	0.17	-0.2
118,255	-		IAI47_19445	0.17	-0.4
118,301	+		IAI47_19445	0.22	+1.4
118,301	+		IAI47_19445	0.22	-0.2
118,301	+		IAI47_19445	0.22	+0.2
118,301	+		IAI47_19445	0.22	+0.3
118,301	+		IAI47_19445	0.22	+0.5
118,302	-		IAI47_19445	0.22	+1.2
118,302	-		IAI47_19445	0.22	+1.2
118,302	-		IAI47_19445	0.22	+0.4
118,302	-		IAI47_19445	0.22	+1.0
118,356	+		IAI47_19445	0.28	+1.2
118,356	+		IAI47_19445	0.28	+0.6
118,393	+		IAI47_19445	0.32	+0.6
118,393	+		IAI47_19445	0.32	-0.2
118,394	-		IAI47_19445	0.32	+0.6
118,477	+		IAI47_19445	0.41	-0.3
118,596	+		IAI47_19445	0.54	+0.6
118,596	+		IAI47_19445	0.54	+0.4
118,656	+		IAI47_19445	0.61	+0.2
118,656	+		IAI47_19445	0.61	+0.4
118,656	+		IAI47_19445	0.61	+1.1
118,657	-		IAI47_19445	0.61	-0.5
118,674	+		IAI47_19445	0.63	-0.4
118,674	+		IAI47_19445	0.63	-1.1
118,674	+		IAI47_19445	0.63	+0.5
118,674	+		IAI47_19445	0.63	-0.8
118,674	+		IAI47_19445	0.63	-0.0
118,674	+		IAI47_19445	0.63	+0.2
118,675	-		IAI47_19445	0.63	+0.6
118,675	-		IAI47_19445	0.63	+2.4
118,675	-		IAI47_19445	0.63	-0.3
118,681	+		IAI47_19445	0.64	+1.2
118,688	-		IAI47_19445	0.64	+0.2
118,765	+		IAI47_19445	0.73	-1.0
118,765	+		IAI47_19445	0.73	+1.0
118,765	+		IAI47_19445	0.73	+0.6
118,766	-		IAI47_19445	0.73	+0.6
118,766	-		IAI47_19445	0.73	+0.4
118,821	+		IAI47_19445	0.79	-1.2
118,822	-		IAI47_19445	0.79	+0.7
118,876	-		IAI47_19445	0.85	-0.4
118,902	-		IAI47_19445	0.88	+1.4
118,907	+		IAI47_19445	0.89	-0.4
118,907	+		IAI47_19445	0.89	-1.4
118,908	-		IAI47_19445	0.89	-0.7
118,908	-		IAI47_19445	0.89	+1.1
118,934	-				-1.0
118,934	-				-0.8
118,942	+				-1.6
118,943	-				-0.1
118,943	-				+1.1
118,951	+				+0.5
118,951	+				-0.0
118,951	+				-0.3
118,952	-				-0.8
118,952	-				+1.0
118,981	-				-0.0
118,981	-				-0.4
119,006	+				+0.2
119,006	+				-0.8
119,007	-				+1.0
119,016	-				+0.6
119,016	-				+0.2
119,028	+				+0.6
119,028	+				-1.4
119,028	+				-1.5
119,028	+				+1.2
119,028	+				-0.5
119,029	-				-1.4
119,046	+				+0.3
119,046	+				-0.4
119,046	+				-0.5
119,047	-				+2.2
119,047	-				+0.6
119,047	-				+0.1
119,047	-				-0.2
119,052	+				-0.0
119,052	+				-0.8
119,053	-				+0.2
119,053	-				+1.2
119,053	-				+0.8
119,079	+				+0.4
119,080	-				+1.8
119,080	-				+0.8
119,094	+				+0.4
119,094	+				-1.1
119,095	-				+0.7
119,139	+				+1.2
119,139	+				+0.2
119,139	+				+1.2
119,139	+				-1.5
119,139	+				-0.4
119,139	+				+0.6
119,139	+				+2.4
119,139	+				+0.2
119,140	-				-0.2
119,140	-				+0.4
119,140	-				-0.2
119,140	-				+0.1
119,207	-				-1.0
119,217	+				+1.2
119,217	+				+1.0
119,217	+				+1.5
119,218	-				-0.4
119,239	+				+0.2
119,240	-				+1.2
119,249	+				-0.3
119,250	-				-0.0
119,250	-				-0.8
119,274	+				-1.1
119,274	+				-0.8
119,275	-				-2.3
119,365	-		IAI47_19450	0.19	-3.0
119,385	+		IAI47_19450	0.22	-2.1
119,396	-		IAI47_19450	0.24	-2.1
119,423	+		IAI47_19450	0.28	-2.8
119,424	-		IAI47_19450	0.28	-2.1
119,541	+		IAI47_19450	0.46	-0.8
119,541	+		IAI47_19450	0.46	-1.8
119,542	-		IAI47_19450	0.46	-2.2
119,554	-		IAI47_19450	0.47	-3.1
119,577	-		IAI47_19450	0.51	-0.4
119,577	-		IAI47_19450	0.51	-0.4
119,577	-		IAI47_19450	0.51	-1.5
119,586	+		IAI47_19450	0.52	-2.1
119,586	+		IAI47_19450	0.52	-0.5
119,587	-		IAI47_19450	0.52	-0.5
119,597	-		IAI47_19450	0.54	-1.1
119,597	-		IAI47_19450	0.54	-1.4
119,597	-		IAI47_19450	0.54	-1.0
119,600	+		IAI47_19450	0.54	-2.4
119,600	+		IAI47_19450	0.54	-1.7
119,600	+		IAI47_19450	0.54	-0.4
119,600	+		IAI47_19450	0.54	-2.0
119,600	+		IAI47_19450	0.54	-2.0
119,600	+		IAI47_19450	0.54	-2.4
119,600	+		IAI47_19450	0.54	-0.8
119,600	+		IAI47_19450	0.54	-3.0
119,600	+		IAI47_19450	0.54	+0.2
119,600	+		IAI47_19450	0.54	-3.6
119,600	+		IAI47_19450	0.54	-1.1
119,601	-		IAI47_19450	0.54	-1.4
119,601	-		IAI47_19450	0.54	-2.7
119,601	-		IAI47_19450	0.54	-3.8
119,601	-		IAI47_19450	0.54	-1.0
119,601	-		IAI47_19450	0.54	+0.2
119,601	-		IAI47_19450	0.54	-2.4
119,601	-		IAI47_19450	0.54	-3.0
119,601	-		IAI47_19450	0.54	-1.4
119,601	-		IAI47_19450	0.54	-2.0
119,601	-		IAI47_19450	0.54	-1.1
119,601	-		IAI47_19450	0.54	+0.2
119,601	-		IAI47_19450	0.54	-2.8
119,601	-		IAI47_19450	0.54	-2.1
119,604	+		IAI47_19450	0.55	-0.8
119,604	+		IAI47_19450	0.55	-1.8
119,604	+		IAI47_19450	0.55	-1.4
119,604	+		IAI47_19450	0.55	-2.4
119,604	+		IAI47_19450	0.55	-3.0
119,604	+		IAI47_19450	0.55	-2.0
119,604	+		IAI47_19450	0.55	-1.9
119,604	+		IAI47_19450	0.55	-1.4
119,604	+		IAI47_19450	0.55	-1.4
119,604	+		IAI47_19450	0.55	-1.4
119,604	+		IAI47_19450	0.55	-1.4
119,604	+		IAI47_19450	0.55	-1.6
119,605	-		IAI47_19450	0.55	-2.3
119,605	-		IAI47_19450	0.55	-1.1
119,605	-		IAI47_19450	0.55	-2.0
119,605	-		IAI47_19450	0.55	-2.1
119,605	-				-2.1
119,605	-		IAI47_19450	0.55	-2.6
119,605	-		IAI47_19450	0.55	-0.8
119,605	-		IAI47_19450	0.55	-1.4
119,605	-		IAI47_19450	0.55	-2.1
119,605	-		IAI47_19450	0.55	+0.5
119,605	-		IAI47_19450	0.55	-2.8
119,606	+		IAI47_19450	0.55	-0.6
119,606	+		IAI47_19450	0.55	-2.2
119,606	+		IAI47_19450	0.55	-1.9
119,606	+		IAI47_19450	0.55	+0.2
119,607	-		IAI47_19450	0.55	-1.8
119,607	-		IAI47_19450	0.55	-1.0
119,607	-		IAI47_19450	0.55	-3.5
119,612	+		IAI47_19450	0.56	-1.7
119,613	-		IAI47_19450	0.56	-0.4
119,613	-		IAI47_19450	0.56	-1.0
119,662	+		IAI47_19450	0.64	-3.0
119,662	+		IAI47_19450	0.64	+1.8
119,730	-		IAI47_19450	0.74	-0.8
119,744	+		IAI47_19450	0.76	+0.2
119,744	+		IAI47_19450	0.76	-0.8
119,744	+		IAI47_19450	0.76	-1.4
119,744	+		IAI47_19450	0.76	-0.6
119,744	+		IAI47_19450	0.76	+0.2
119,744	+		IAI47_19450	0.76	-0.8
119,744	+		IAI47_19450	0.76	-1.0
119,744	+		IAI47_19450	0.76	-2.8
119,745	-		IAI47_19450	0.76	-1.8
119,745	-		IAI47_19450	0.76	-2.4
119,783	+		IAI47_19450	0.82	-1.0
119,783	+		IAI47_19450	0.82	-0.4
119,784	-		IAI47_19450	0.82	+0.2
119,835	+		IAI47_19450	0.89	-2.4
119,835	+		IAI47_19450	0.89	-0.6
119,835	+		IAI47_19450	0.89	-1.2
119,835	+		IAI47_19450	0.89	-0.4
119,835	+		IAI47_19450	0.89	-1.4
119,836	-		IAI47_19450	0.89	-0.8
119,836	-		IAI47_19450	0.89	-2.0
119,836	-		IAI47_19450	0.89	-2.2
119,836	-		IAI47_19450	0.89	-2.1
119,836	-		IAI47_19450	0.89	-0.8
119,837	+		IAI47_19450	0.90	-1.1
119,837	+		IAI47_19450	0.90	-2.6
119,837	+		IAI47_19450	0.90	-1.0
119,837	+		IAI47_19450	0.90	-0.8
119,837	+		IAI47_19450	0.90	-1.8
119,837	+		IAI47_19450	0.90	+0.8
119,837	+		IAI47_19450	0.90	+1.2
119,838	-		IAI47_19450	0.90	+0.2
119,838	-		IAI47_19450	0.90	-1.4
119,838	-		IAI47_19450	0.90	-2.4
119,838	-		IAI47_19450	0.90	-1.3
119,838	-		IAI47_19450	0.90	-3.7
119,838	-		IAI47_19450	0.90	-1.7
119,838	-		IAI47_19450	0.90	+0.2
119,889	+				-0.8
119,889	+				-0.3
119,890	-				-1.7
119,890	-				-1.8
119,904	+				+0.1
119,982	-				-0.2
119,989	+				+0.0
119,989	+				-0.4
120,008	+				+1.8
120,012	+				-1.4
120,012	+				-0.3
120,012	+				+0.2
120,013	-				+0.5
120,184	+		IAI47_19455	0.23	+0.2
120,184	+		IAI47_19455	0.23	-1.1
120,185	-		IAI47_19455	0.23	+1.2
120,236	+		IAI47_19455	0.29	-0.8
120,236	+		IAI47_19455	0.29	-0.7
120,236	+		IAI47_19455	0.29	-1.4
120,237	-		IAI47_19455	0.29	-0.8
120,261	-		IAI47_19455	0.32	-0.2
120,294	-		IAI47_19455	0.36	-0.5
120,345	+		IAI47_19455	0.42	-0.5
120,345	+		IAI47_19455	0.42	+0.3
120,345	+		IAI47_19455	0.42	+1.6
120,345	+		IAI47_19455	0.42	+0.2
120,345	+		IAI47_19455	0.42	-0.2
120,346	-		IAI47_19455	0.42	-0.1
120,346	-		IAI47_19455	0.42	+0.1
120,346	-		IAI47_19455	0.42	-0.5
120,346	-		IAI47_19455	0.42	+0.2
120,346	-		IAI47_19455	0.42	+0.2
120,349	+		IAI47_19455	0.42	+0.4
120,349	+		IAI47_19455	0.42	+0.5
120,358	+		IAI47_19455	0.43	-0.4
120,358	+		IAI47_19455	0.43	+0.2
120,359	-		IAI47_19455	0.44	+0.2
120,359	-		IAI47_19455	0.44	-1.8
120,359	-		IAI47_19455	0.44	+0.7
120,401	+		IAI47_19455	0.48	-0.5
120,402	-		IAI47_19455	0.49	+1.2
120,476	-		IAI47_19455	0.57	+0.8
120,506	+		IAI47_19455	0.61	-1.4
120,506	+		IAI47_19455	0.61	+0.2
120,506	+		IAI47_19455	0.61	+1.0
120,507	-		IAI47_19455	0.61	-1.1
120,507	-		IAI47_19455	0.61	-0.3
120,557	+		IAI47_19455	0.67	-0.0
120,557	+		IAI47_19455	0.67	+0.2
120,626	+		IAI47_19455	0.75	+2.5
120,626	+		IAI47_19455	0.75	+0.6
120,639	-		IAI47_19455	0.76	-0.4
120,639	-		IAI47_19455	0.76	-1.4
120,758	+				-1.4
120,758	+				-0.3
120,759	-				-0.4
120,760	+				+0.1
120,761	-				+0.5
120,811	-				-0.4
120,822	+				-0.2
120,822	+				+2.5
120,856	+				+0.6
120,856	+				+0.4
120,856	+				+1.0
120,856	+				-0.8
120,857	-				-0.4