Strain Fitness in Pantoea sp. MT58 around IAI47_19440

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
115,992	+				+1.2
115,992	+				+1.6
115,992	+				+0.5
115,992	+				-0.2
115,992	+				+0.5
115,992	+				-0.2
115,993	-				-1.4
115,993	-				-0.1
115,993	-				-0.2
115,993	-				+1.0
115,994	+				+1.2
115,994	+				+1.2
115,994	+				+0.2
115,994	+				+0.2
115,995	-				+0.2
115,995	-				-0.0
115,995	-				+1.0
115,995	-				-0.2
116,047	+				+0.9
116,047	+				-0.5
116,047	+				+0.2
116,052	-				-0.8
116,052	-				+0.5
116,052	-				+1.9
116,096	+				-1.2
116,096	+				+1.0
116,098	+				+0.5
116,098	+				+0.8
116,099	-				+0.2
116,155	-		IAI47_19435	0.16	-0.8
116,281	+		IAI47_19435	0.30	-1.2
116,394	+		IAI47_19435	0.43	+0.2
116,394	+		IAI47_19435	0.43	+1.1
116,395	-		IAI47_19435	0.43	-0.2
116,395	-		IAI47_19435	0.43	+0.2
116,426	+		IAI47_19435	0.46	+0.8
116,465	-		IAI47_19435	0.51	+0.4
116,465	-		IAI47_19435	0.51	+1.8
116,465	-		IAI47_19435	0.51	+0.2
116,554	+		IAI47_19435	0.61	-0.1
116,590	+		IAI47_19435	0.65	-0.3
116,590	+		IAI47_19435	0.65	+0.2
116,590	+		IAI47_19435	0.65	-0.5
116,590	+		IAI47_19435	0.65	-0.2
116,591	-		IAI47_19435	0.65	-1.6
116,591	-		IAI47_19435	0.65	-0.5
116,596	+		IAI47_19435	0.66	-0.0
116,596	+		IAI47_19435	0.66	-1.2
116,596	+				+0.4
116,596	+		IAI47_19435	0.66	-0.4
116,596	+		IAI47_19435	0.66	+1.5
116,597	-		IAI47_19435	0.66	+1.6
116,706	+		IAI47_19435	0.78	-0.0
116,706	+		IAI47_19435	0.78	+1.2
116,707	-		IAI47_19435	0.78	-1.4
116,707	-		IAI47_19435	0.78	-0.4
116,707	-		IAI47_19435	0.78	+0.6
116,716	+		IAI47_19435	0.79	+0.2
116,717	-		IAI47_19435	0.80	+0.2
116,795	-		IAI47_19435	0.88	+0.7
116,878	+				-0.2
116,878	+				+0.8
116,878	+				-0.2
116,879	-				-0.3
116,879	-				-1.4
116,921	-				-1.5
116,940	+				+2.0
116,949	-				+0.2
117,024	+				+0.7
117,068	+		IAI47_19440	0.11	-0.4
117,068	+		IAI47_19440	0.11	+0.2
117,068	+		IAI47_19440	0.11	-0.7
117,141	+		IAI47_19440	0.18	-1.3
117,142	-		IAI47_19440	0.18	+0.2
117,168	+		IAI47_19440	0.21	+0.4
117,169	-		IAI47_19440	0.21	-0.1
117,173	+		IAI47_19440	0.21	+1.5
117,173	+		IAI47_19440	0.21	+0.2
117,285	+		IAI47_19440	0.32	+0.8
117,285	+		IAI47_19440	0.32	+0.4
117,285	+		IAI47_19440	0.32	+0.1
117,286	-		IAI47_19440	0.32	-0.4
117,286	-		IAI47_19440	0.32	-1.1
117,288	+		IAI47_19440	0.32	+0.5
117,375	+		IAI47_19440	0.40	-1.4
117,375	+		IAI47_19440	0.40	+0.8
117,375	+		IAI47_19440	0.40	+0.3
117,376	-		IAI47_19440	0.40	-0.3
117,410	-		IAI47_19440	0.43	-0.2
117,410	-		IAI47_19440	0.43	-1.0
117,410	-		IAI47_19440	0.43	-0.8
117,410	-		IAI47_19440	0.43	-0.8
117,410	-		IAI47_19440	0.43	+1.0
117,443	+		IAI47_19440	0.47	-0.2
117,443	+		IAI47_19440	0.47	+0.5
117,443	+		IAI47_19440	0.47	-0.1
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	+0.2
117,443	+		IAI47_19440	0.47	-0.6
117,443	+		IAI47_19440	0.47	-0.5
117,443	+		IAI47_19440	0.47	-1.2
117,443	+		IAI47_19440	0.47	+0.2
117,444	-		IAI47_19440	0.47	+0.6
117,444	-		IAI47_19440	0.47	+0.8
117,444	-		IAI47_19440	0.47	-0.6
117,444	-		IAI47_19440	0.47	+0.7
117,534	+		IAI47_19440	0.55	-0.4
117,624	+		IAI47_19440	0.64	+0.2
117,647	+		IAI47_19440	0.66	-0.8
117,647	+		IAI47_19440	0.66	+0.2
117,648	-		IAI47_19440	0.66	+1.9
117,648	-		IAI47_19440	0.66	+1.2
117,648	-		IAI47_19440	0.66	+0.2
117,656	+		IAI47_19440	0.67	+0.8
117,656	+		IAI47_19440	0.67	-1.2
117,657	-		IAI47_19440	0.67	-0.4
117,973	+				+0.1
117,974	-				-1.6
117,974	-				+0.6
118,023	+				+1.0
118,023	+				+0.6
118,024	-				+0.1
118,063	+				+0.6
118,063	+				+1.2
118,064	-				+0.1
118,064	-				+0.2
118,082	-				-0.4
118,089	-				-0.2
118,104	-				-0.8
118,147	-				+0.7
118,246	-		IAI47_19445	0.16	+0.4
118,246	-		IAI47_19445	0.16	-1.3
118,254	+		IAI47_19445	0.16	+0.8
118,254	+		IAI47_19445	0.16	-1.0
118,255	-		IAI47_19445	0.17	-0.2
118,255	-		IAI47_19445	0.17	-0.4
118,301	+		IAI47_19445	0.22	+1.4
118,301	+		IAI47_19445	0.22	-0.2
118,301	+		IAI47_19445	0.22	+0.2
118,301	+		IAI47_19445	0.22	+0.3
118,301	+		IAI47_19445	0.22	+0.5
118,302	-		IAI47_19445	0.22	+1.2
118,302	-		IAI47_19445	0.22	+1.2
118,302	-		IAI47_19445	0.22	+0.4
118,302	-		IAI47_19445	0.22	+1.0
118,356	+		IAI47_19445	0.28	+1.2
118,356	+		IAI47_19445	0.28	+0.6
118,393	+		IAI47_19445	0.32	+0.6
118,393	+		IAI47_19445	0.32	-0.2
118,394	-		IAI47_19445	0.32	+0.6
118,477	+		IAI47_19445	0.41	-0.3
118,596	+		IAI47_19445	0.54	+0.6
118,596	+		IAI47_19445	0.54	+0.4
118,656	+		IAI47_19445	0.61	+0.2
118,656	+		IAI47_19445	0.61	+0.4
118,656	+		IAI47_19445	0.61	+1.1
118,657	-		IAI47_19445	0.61	-0.5
118,674	+		IAI47_19445	0.63	-0.4
118,674	+		IAI47_19445	0.63	-1.1
118,674	+		IAI47_19445	0.63	+0.5
118,674	+		IAI47_19445	0.63	-0.8
118,674	+		IAI47_19445	0.63	-0.0
118,674	+		IAI47_19445	0.63	+0.2
118,675	-		IAI47_19445	0.63	+0.6
118,675	-		IAI47_19445	0.63	+2.4
118,675	-		IAI47_19445	0.63	-0.3
118,681	+		IAI47_19445	0.64	+1.2
118,688	-		IAI47_19445	0.64	+0.2
118,765	+		IAI47_19445	0.73	-1.0
118,765	+		IAI47_19445	0.73	+1.0
118,765	+		IAI47_19445	0.73	+0.6
118,766	-		IAI47_19445	0.73	+0.6
118,766	-		IAI47_19445	0.73	+0.4
118,821	+		IAI47_19445	0.79	-1.2
118,822	-		IAI47_19445	0.79	+0.7
118,876	-		IAI47_19445	0.85	-0.4
118,902	-		IAI47_19445	0.88	+1.4
118,907	+		IAI47_19445	0.89	-0.4
118,907	+		IAI47_19445	0.89	-1.4
118,908	-		IAI47_19445	0.89	-0.7
118,908	-		IAI47_19445	0.89	+1.1
118,934	-				-1.0
118,934	-				-0.8
118,942	+				-1.6
118,943	-				-0.1
118,943	-				+1.1
118,951	+				+0.5
118,951	+				-0.0
118,951	+				-0.3
118,952	-				-0.8
118,952	-				+1.0
118,981	-				-0.0
118,981	-				-0.4
119,006	+				+0.2
119,006	+				-0.8
119,007	-				+1.0