Strain Fitness in Pantoea sp. MT58 around IAI47_19430

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
114,490	+		IAI47_19425	0.59	+0.7
114,490	+		IAI47_19425	0.59	+1.2
114,490	+		IAI47_19425	0.59	+1.3
114,579	+		IAI47_19425	0.63	+0.6
114,579	+		IAI47_19425	0.63	-0.3
114,579	+		IAI47_19425	0.63	-0.1
114,579	+		IAI47_19425	0.63	-0.4
114,579	+		IAI47_19425	0.63	+1.5
114,579	+		IAI47_19425	0.63	-0.4
114,580	-		IAI47_19425	0.63	+1.5
114,580	-		IAI47_19425	0.63	+0.6
114,580	-		IAI47_19425	0.63	-1.0
114,580	-		IAI47_19425	0.63	+1.4
114,591	-		IAI47_19425	0.64	-0.5
114,672	-		IAI47_19425	0.68	+0.6
114,672	-		IAI47_19425	0.68	-1.4
114,678	+		IAI47_19425	0.68	-1.1
114,717	-		IAI47_19425	0.70	+0.2
114,736	+		IAI47_19425	0.71	-1.1
114,736	+		IAI47_19425	0.71	-0.6
114,736	+		IAI47_19425	0.71	+1.4
114,752	+		IAI47_19425	0.72	-0.0
114,752	+		IAI47_19425	0.72	+0.3
114,776	-		IAI47_19425	0.73	+0.6
114,776	-		IAI47_19425	0.73	-0.5
114,776	-		IAI47_19425	0.73	+0.0
114,811	+		IAI47_19425	0.75	-1.4
114,812	-		IAI47_19425	0.75	-0.0
114,887	+		IAI47_19425	0.79	+0.2
114,887	+		IAI47_19425	0.79	-1.0
114,887	+		IAI47_19425	0.79	+0.8
114,888	-		IAI47_19425	0.79	-0.6
114,888	-		IAI47_19425	0.79	-0.8
114,888	-		IAI47_19425	0.79	-2.1
114,914	+		IAI47_19425	0.80	-0.4
114,914	+		IAI47_19425	0.80	+0.6
114,914	+		IAI47_19425	0.80	+0.8
114,914	+		IAI47_19425	0.80	-0.2
114,914	+		IAI47_19425	0.80	-1.6
114,914	+		IAI47_19425	0.80	-1.1
114,914	+		IAI47_19425	0.80	+0.4
114,914	+		IAI47_19425	0.80	+0.6
114,915	-		IAI47_19425	0.80	+0.3
114,915	-		IAI47_19425	0.80	+1.2
114,915	-		IAI47_19425	0.80	-0.2
114,915	-		IAI47_19425	0.80	+0.4
114,915	-		IAI47_19425	0.80	-0.1
114,915	-		IAI47_19425	0.80	-0.6
114,915	-		IAI47_19425	0.80	+0.0
114,926	+		IAI47_19425	0.81	-0.4
114,926	+		IAI47_19425	0.81	+2.5
114,926	+		IAI47_19425	0.81	+0.2
114,926	+		IAI47_19425	0.81	-0.5
114,926	+		IAI47_19425	0.81	+1.1
114,946	+		IAI47_19425	0.82	-0.4
114,946	+		IAI47_19425	0.82	+0.5
114,946	+		IAI47_19425	0.82	+0.4
114,946	+		IAI47_19425	0.82	+1.0
114,946	+		IAI47_19425	0.82	+0.1
114,946	+		IAI47_19425	0.82	+0.5
114,947	-		IAI47_19425	0.82	+1.2
114,947	-		IAI47_19425	0.82	-0.2
114,947	-		IAI47_19425	0.82	-0.0
114,967	+		IAI47_19425	0.83	-0.6
114,967	+		IAI47_19425	0.83	-0.8
114,967	+		IAI47_19425	0.83	+0.7
114,967	+		IAI47_19425	0.83	+0.8
114,967	+		IAI47_19425	0.83	+1.5
114,967	+		IAI47_19425	0.83	-0.2
114,967	+		IAI47_19425	0.83	+0.2
114,968	-		IAI47_19425	0.83	+0.9
114,968	-		IAI47_19425	0.83	+4.0
114,968	-		IAI47_19425	0.83	+0.2
114,968	-		IAI47_19425	0.83	-0.4
114,968	-		IAI47_19425	0.83	-2.4
114,973	+		IAI47_19425	0.83	+2.8
114,973	+		IAI47_19425	0.83	+0.7
114,973	+		IAI47_19425	0.83	-0.3
114,973	+		IAI47_19425	0.83	+0.2
114,974	-		IAI47_19425	0.83	+1.2
115,036	+		IAI47_19425	0.86	-0.8
115,037	-		IAI47_19425	0.86	-0.2
115,047	+		IAI47_19425	0.87	-0.2
115,073	+		IAI47_19425	0.88	-0.5
115,073	+		IAI47_19425	0.88	-0.1
115,073	+		IAI47_19425	0.88	+0.2
115,073	+		IAI47_19425	0.88	-0.1
115,073	+		IAI47_19425	0.88	+0.1
115,073	+		IAI47_19425	0.88	-1.6
115,073	+		IAI47_19425	0.88	-0.6
115,074	-		IAI47_19425	0.88	+0.5
115,074	-		IAI47_19425	0.88	+1.0
115,074	-		IAI47_19425	0.88	+0.2
115,074	-		IAI47_19425	0.88	-0.6
115,074	-		IAI47_19425	0.88	+0.9
115,074	-		IAI47_19425	0.88	-0.6
115,074	-		IAI47_19425	0.88	-0.3
115,074	-		IAI47_19425	0.88	-1.6
115,141	+				+0.2
115,168	+				-0.2
115,168	+				+0.5
115,169	-				-1.4
115,169	-				+1.2
115,180	+				-0.5
115,181	-				-0.4
115,291	+				+0.9
115,291	+				+0.5
115,292	-				+0.0
115,305	-				+0.2
115,350	+				+1.2
115,350	+				+0.8
115,350	+				+0.2
115,351	-				+0.8
115,351	-				+0.2
115,351	-				-0.4
115,413	+				+0.7
115,413	+				-0.3
115,484	+				+0.2
115,497	+		IAI47_19430	0.11	+0.4
115,532	-		IAI47_19430	0.19	-0.0
115,532	-		IAI47_19430	0.19	-0.5
115,743	+		IAI47_19430	0.63	+2.3
115,743	+		IAI47_19430	0.63	+0.5
115,744	-		IAI47_19430	0.64	-0.3
115,744	-		IAI47_19430	0.64	+1.2
115,816	+		IAI47_19430	0.79	+0.7
115,817	-		IAI47_19430	0.79	-0.7
115,855	+		IAI47_19430	0.87	+0.2
115,855	+		IAI47_19430	0.87	-3.2
115,891	-				-0.8
115,891	-				+0.2
115,891	-				+1.4
115,891	-				+0.6
115,912	+				-0.6
115,912	+				+0.2
115,992	+				+1.2
115,992	+				+1.6
115,992	+				+0.5
115,992	+				-0.2
115,992	+				+0.5
115,992	+				-0.2
115,993	-				-1.4
115,993	-				-0.1
115,993	-				-0.2
115,993	-				+1.0
115,994	+				+1.2
115,994	+				+1.2
115,994	+				+0.2
115,994	+				+0.2
115,995	-				+0.2
115,995	-				-0.0
115,995	-				+1.0
115,995	-				-0.2
116,047	+				+0.9
116,047	+				-0.5
116,047	+				+0.2
116,052	-				-0.8
116,052	-				+0.5
116,052	-				+1.9
116,096	+				-1.2
116,096	+				+1.0
116,098	+				+0.5
116,098	+				+0.8
116,099	-				+0.2
116,155	-		IAI47_19435	0.16	-0.8
116,281	+		IAI47_19435	0.30	-1.2
116,394	+		IAI47_19435	0.43	+0.2
116,394	+		IAI47_19435	0.43	+1.1
116,395	-		IAI47_19435	0.43	-0.2
116,395	-		IAI47_19435	0.43	+0.2
116,426	+		IAI47_19435	0.46	+0.8
116,465	-		IAI47_19435	0.51	+0.4
116,465	-		IAI47_19435	0.51	+1.8
116,465	-		IAI47_19435	0.51	+0.2
116,554	+		IAI47_19435	0.61	-0.1
116,590	+		IAI47_19435	0.65	-0.3
116,590	+		IAI47_19435	0.65	+0.2
116,590	+		IAI47_19435	0.65	-0.5
116,590	+		IAI47_19435	0.65	-0.2
116,591	-		IAI47_19435	0.65	-1.6
116,591	-		IAI47_19435	0.65	-0.5
116,596	+		IAI47_19435	0.66	-0.0
116,596	+		IAI47_19435	0.66	-1.2
116,596	+				+0.4
116,596	+		IAI47_19435	0.66	-0.4
116,596	+		IAI47_19435	0.66	+1.5
116,597	-		IAI47_19435	0.66	+1.6
116,706	+		IAI47_19435	0.78	-0.0
116,706	+		IAI47_19435	0.78	+1.2
116,707	-		IAI47_19435	0.78	-1.4
116,707	-		IAI47_19435	0.78	-0.4
116,707	-		IAI47_19435	0.78	+0.6
116,716	+		IAI47_19435	0.79	+0.2
116,717	-		IAI47_19435	0.80	+0.2
116,795	-		IAI47_19435	0.88	+0.7
116,878	+				-0.2
116,878	+				+0.8
116,878	+				-0.2
116,879	-				-0.3
116,879	-				-1.4