Strain Fitness in Pantoea sp. MT58 around IAI47_18485

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,931,560	+		IAI47_18480	0.35	-2.3
3,931,576	-		IAI47_18480	0.36	-0.7
3,931,582	+		IAI47_18480	0.36	+1.3
3,931,582	+		IAI47_18480	0.36	+0.3
3,931,582	+		IAI47_18480	0.36	-1.1
3,931,582	+		IAI47_18480	0.36	+0.6
3,931,583	-		IAI47_18480	0.37	-1.3
3,931,586	+		IAI47_18480	0.37	+0.7
3,931,586	+		IAI47_18480	0.37	+1.3
3,931,587	-		IAI47_18480	0.37	+0.9
3,931,587	-		IAI47_18480	0.37	+0.5
3,931,587	-		IAI47_18480	0.37	+0.5
3,931,599	+		IAI47_18480	0.38	+0.3
3,931,624	+		IAI47_18480	0.40	-0.0
3,931,625	-		IAI47_18480	0.40	+1.3
3,931,659	+		IAI47_18480	0.43	-0.7
3,931,716	+		IAI47_18480	0.47	+0.3
3,931,717	-		IAI47_18480	0.47	+0.1
3,931,717	-		IAI47_18480	0.47	+0.3
3,931,717	-		IAI47_18480	0.47	+0.3
3,931,718	+		IAI47_18480	0.47	-0.5
3,931,718	+		IAI47_18480	0.47	-0.7
3,931,718	+		IAI47_18480	0.47	-1.3
3,931,719	-		IAI47_18480	0.47	+0.6
3,931,719	-		IAI47_18480	0.47	+2.3
3,931,732	-		IAI47_18480	0.48	+0.3
3,931,862	+		IAI47_18480	0.59	-0.5
3,931,974	+		IAI47_18480	0.68	+0.3
3,931,974	+		IAI47_18480	0.68	-0.7
3,931,975	-		IAI47_18480	0.68	+1.1
3,932,033	+		IAI47_18480	0.73	+1.3
3,932,121	+		IAI47_18480	0.80	+0.3
3,932,122	-		IAI47_18480	0.80	+0.8
3,932,171	+		IAI47_18480	0.84	-0.4
3,932,171	+		IAI47_18480	0.84	-1.0
3,932,172	-		IAI47_18480	0.84	+0.7
3,932,172	-		IAI47_18480	0.84	+0.3
3,932,172	-		IAI47_18480	0.84	-0.5
3,932,183	+		IAI47_18480	0.84	-0.7
3,932,183	+		IAI47_18480	0.84	+0.7
3,932,183	+		IAI47_18480	0.84	-0.4
3,932,183	+		IAI47_18480	0.84	-1.4
3,932,183	+		IAI47_18480	0.84	-1.7
3,932,183	+		IAI47_18480	0.84	-0.3
3,932,183	+		IAI47_18480	0.84	-0.9
3,932,183	+		IAI47_18480	0.84	-1.1
3,932,183	+		IAI47_18480	0.84	-0.2
3,932,183	+		IAI47_18480	0.84	+0.5
3,932,183	+		IAI47_18480	0.84	+0.7
3,932,183	+		IAI47_18480	0.84	+1.3
3,932,183	+		IAI47_18480	0.84	-0.3
3,932,183	+		IAI47_18480	0.84	-0.6
3,932,183	+		IAI47_18480	0.84	-0.5
3,932,183	+		IAI47_18480	0.84	+0.8
3,932,183	+		IAI47_18480	0.84	+0.6
3,932,183	+		IAI47_18480	0.84	+0.3
3,932,184	-		IAI47_18480	0.85	+1.3
3,932,184	-		IAI47_18480	0.85	-1.2
3,932,184	-		IAI47_18480	0.85	+0.9
3,932,184	-		IAI47_18480	0.85	-0.3
3,932,184	-		IAI47_18480	0.85	+0.7
3,932,184	-		IAI47_18480	0.85	+1.0
3,932,184	-		IAI47_18480	0.85	-0.3
3,932,184	-		IAI47_18480	0.85	-0.4
3,932,184	-		IAI47_18480	0.85	-0.0
3,932,405	+				+0.8
3,932,420	+				-0.2
3,932,420	+				+0.3
3,932,420	+				-1.3
3,932,420	+				+0.3
3,932,420	+				-1.3
3,932,420	+				-2.5
3,932,420	+				-0.1
3,932,420	+				-3.0
3,932,421	-				-1.0
3,932,421	-				+1.8
3,932,423	+				-2.1
3,932,435	+				+0.3
3,932,437	+				-0.0
3,932,437	+				-1.3
3,932,437	+				+0.3
3,932,437	+				-1.3
3,932,437	+				+0.3
3,932,437	+				-0.7
3,932,438	-				-1.5
3,932,480	+				-1.7
3,932,480	+				+0.3
3,932,480	+				-0.1
3,932,481	-				-0.5
3,932,481	-				+1.3
3,932,481	-				-0.3
3,932,481	-				-0.3
3,932,481	-				-1.1
3,932,481	-				-0.2
3,932,482	+				-1.7
3,932,482	+				-2.4
3,932,482	+				-1.5
3,932,482	+				-1.2
3,932,543	+		IAI47_18485	0.15	+0.3
3,932,543	+		IAI47_18485	0.15	-1.5
3,932,544	-		IAI47_18485	0.15	-1.2
3,932,544	-		IAI47_18485	0.15	-1.5
3,932,545	+		IAI47_18485	0.15	-0.2
3,932,545	+		IAI47_18485	0.15	-0.7
3,932,545	+		IAI47_18485	0.15	-1.7
3,932,545	+		IAI47_18485	0.15	-1.1
3,932,545	+		IAI47_18485	0.15	-0.0
3,932,545	+		IAI47_18485	0.15	+0.3
3,932,546	-		IAI47_18485	0.15	-1.1
3,932,546	-		IAI47_18485	0.15	-2.1
3,932,546	-		IAI47_18485	0.15	-0.1
3,932,546	-		IAI47_18485	0.15	-0.3
3,932,562	+		IAI47_18485	0.16	-1.3
3,932,562	+		IAI47_18485	0.16	-2.3
3,932,563	-		IAI47_18485	0.17	-1.1
3,932,624	+		IAI47_18485	0.22	+0.3
3,932,625	-		IAI47_18485	0.22	-1.5
3,932,625	-		IAI47_18485	0.22	-2.1
3,932,626	+		IAI47_18485	0.22	-0.3
3,932,626	+		IAI47_18485	0.22	-2.2
3,932,626	+		IAI47_18485	0.22	-3.1
3,932,626	+		IAI47_18485	0.22	-0.9
3,932,626	+		IAI47_18485	0.22	+0.5
3,932,627	-		IAI47_18485	0.22	-0.5
3,932,627	-		IAI47_18485	0.22	-1.1
3,932,627	-		IAI47_18485	0.22	+0.3
3,932,627	-		IAI47_18485	0.22	-2.3
3,932,627	-		IAI47_18485	0.22	+0.3
3,932,678	+		IAI47_18485	0.27	-1.1
3,932,678	+		IAI47_18485	0.27	-1.1
3,932,678	+		IAI47_18485	0.27	-0.5
3,932,679	-		IAI47_18485	0.27	-0.3
3,932,679	-		IAI47_18485	0.27	-0.7
3,932,679	-		IAI47_18485	0.27	-1.3
3,932,713	+		IAI47_18485	0.30	+1.3
3,932,713	+		IAI47_18485	0.30	-0.5
3,932,714	-		IAI47_18485	0.30	-2.3
3,932,716	+		IAI47_18485	0.30	-1.7
3,932,716	+		IAI47_18485	0.30	-0.7
3,932,717	-		IAI47_18485	0.30	-1.1
3,932,782	+		IAI47_18485	0.36	-1.9
3,932,783	-		IAI47_18485	0.36	-1.3
3,932,783	-		IAI47_18485	0.36	-2.3
3,932,783	-		IAI47_18485	0.36	+0.3
3,932,783	-		IAI47_18485	0.36	-1.3
3,932,809	+		IAI47_18485	0.38	+0.5
3,932,810	-		IAI47_18485	0.38	-1.5
3,932,810	-		IAI47_18485	0.38	-2.9
3,932,834	+		IAI47_18485	0.40	+1.3
3,932,834	+		IAI47_18485	0.40	+0.3
3,932,834	+		IAI47_18485	0.40	+1.3
3,932,835	-		IAI47_18485	0.41	-1.7
3,932,836	+		IAI47_18485	0.41	-0.7
3,932,836	+		IAI47_18485	0.41	-1.3
3,932,836	+		IAI47_18485	0.41	-1.3
3,932,836	+		IAI47_18485	0.41	-0.7
3,932,836	+		IAI47_18485	0.41	-1.1
3,932,836	+		IAI47_18485	0.41	-2.3
3,932,837	-		IAI47_18485	0.41	+0.3
3,932,837	-		IAI47_18485	0.41	-1.7
3,932,837	-		IAI47_18485	0.41	-2.1
3,932,837	-		IAI47_18485	0.41	-0.7
3,932,837	-		IAI47_18485	0.41	-3.7
3,932,837	-		IAI47_18485	0.41	-2.3
3,932,837	-		IAI47_18485	0.41	-2.3
3,932,837	-		IAI47_18485	0.41	-1.7
3,932,837	-		IAI47_18485	0.41	-0.5
3,932,837	-		IAI47_18485	0.41	-1.3
3,932,837	-		IAI47_18485	0.41	-2.1
3,932,837	-		IAI47_18485	0.41	-0.5
3,932,837	-		IAI47_18485	0.41	-2.0
3,932,837	-		IAI47_18485	0.41	+0.3
3,932,837	-		IAI47_18485	0.41	-0.7
3,932,840	+		IAI47_18485	0.41	-0.3
3,932,840	+		IAI47_18485	0.41	+0.3
3,932,840	+		IAI47_18485	0.41	-2.1
3,932,841	-		IAI47_18485	0.41	-0.4
3,932,876	+		IAI47_18485	0.44	-1.5
3,932,877	-		IAI47_18485	0.44	-1.7
3,932,924	+		IAI47_18485	0.48	-0.7
3,932,925	-		IAI47_18485	0.49	-0.5
3,932,959	+		IAI47_18485	0.52	-1.5
3,932,960	-		IAI47_18485	0.52	+0.7
3,932,960	-		IAI47_18485	0.52	-1.2
3,932,960	-		IAI47_18485	0.52	-1.0
3,932,993	+		IAI47_18485	0.55	-2.7
3,932,993	+		IAI47_18485	0.55	-3.3
3,932,994	-		IAI47_18485	0.55	+1.3
3,932,994	-		IAI47_18485	0.55	+1.8
3,932,994	-		IAI47_18485	0.55	+1.0
3,932,994	-		IAI47_18485	0.55	-3.1
3,933,025	+		IAI47_18485	0.57	-1.3
3,933,025	+		IAI47_18485	0.57	-1.9
3,933,025	+		IAI47_18485	0.57	-1.3
3,933,025	+		IAI47_18485	0.57	-1.0
3,933,025	+		IAI47_18485	0.57	-1.7
3,933,026	-		IAI47_18485	0.57	-0.3
3,933,026	-		IAI47_18485	0.57	-1.9
3,933,026	-		IAI47_18485	0.57	-1.7
3,933,071	+		IAI47_18485	0.61	-1.7
3,933,071	+		IAI47_18485	0.61	-1.9
3,933,071	+		IAI47_18485	0.61	-0.7
3,933,071	+		IAI47_18485	0.61	-3.8
3,933,071	+		IAI47_18485	0.61	-1.1
3,933,072	-		IAI47_18485	0.62	-0.7
3,933,072	-		IAI47_18485	0.62	-1.3
3,933,072	-		IAI47_18485	0.62	-1.1
3,933,072	-		IAI47_18485	0.62	-1.7
3,933,072	-		IAI47_18485	0.62	-0.5
3,933,072	-		IAI47_18485	0.62	-1.7
3,933,072	-		IAI47_18485	0.62	-1.9
3,933,072	-		IAI47_18485	0.62	-1.7
3,933,072	-		IAI47_18485	0.62	-0.7
3,933,072	-		IAI47_18485	0.62	-0.3
3,933,072	-		IAI47_18485	0.62	-0.7
3,933,093	-		IAI47_18485	0.63	-0.5
3,933,093	-		IAI47_18485	0.63	-1.3
3,933,125	-		IAI47_18485	0.66	+1.1
3,933,125	-		IAI47_18485	0.66	-1.3
3,933,251	+		IAI47_18485	0.77	-1.2
3,933,271	+		IAI47_18485	0.79	-0.9
3,933,271	+		IAI47_18485	0.79	-1.4
3,933,271	+		IAI47_18485	0.79	-1.7
3,933,272	-		IAI47_18485	0.79	+0.8
3,933,312	+		IAI47_18485	0.83	+0.3
3,933,312	+		IAI47_18485	0.83	-1.7
3,933,313	-		IAI47_18485	0.83	-1.3
3,933,342	-		IAI47_18485	0.85	-0.7
3,933,372	-		IAI47_18485	0.88	+0.5
3,933,410	+				-0.3
3,933,411	-				-1.6
3,933,458	+				-1.3
3,933,458	+				-1.1
3,933,458	+				-2.0
3,933,458	+				-2.1
3,933,458	+				+0.3
3,933,458	+				+0.1
3,933,458	+				+0.1
3,933,459	-				+1.3
3,933,459	-				-2.2
3,933,460	+				-2.5
3,933,460	+				-0.2
3,933,460	+				-1.0
3,933,460	+				-1.5
3,933,461	-				-1.7
3,933,461	-				-1.7
3,933,461	-				-0.5
3,933,461	-				-1.7
3,933,461	-				-2.2
3,933,461	-				-2.5
3,933,494	+				-1.7
3,933,495	-				-1.5
3,933,495	-				-0.6
3,933,495	-				-2.1
3,933,559	+				-0.3
3,933,563	+				+0.3
3,933,563	+				-0.5
3,933,563	+				-0.7
3,933,586	-		IAI47_18490	0.13	-1.4
3,933,586	-		IAI47_18490	0.13	-0.9
3,933,625	+		IAI47_18490	0.19	-0.9
3,933,626	-		IAI47_18490	0.19	-1.9
3,933,626	-		IAI47_18490	0.19	-0.3
3,933,833	+		IAI47_18490	0.48	-2.1
3,933,833	+		IAI47_18490	0.48	-0.7
3,933,833	+		IAI47_18490	0.48	-1.3
3,933,833	+		IAI47_18490	0.48	-1.7
3,933,834	-		IAI47_18490	0.48	-0.7
3,933,834	-		IAI47_18490	0.48	+0.3
3,933,834	-		IAI47_18490	0.48	-2.6
3,934,032	+		IAI47_18490	0.76	-2.4
3,934,033	-		IAI47_18490	0.76	-1.3
3,934,033	-		IAI47_18490	0.76	-0.7
3,934,072	+		IAI47_18490	0.82	+1.3
3,934,073	-		IAI47_18490	0.82	-3.2
3,934,141	-				-1.9
3,934,141	-				-0.4
3,934,170	+				+0.3
3,934,170	+				-1.5
3,934,171	-				-2.7
3,934,171	-				-1.3
3,934,171	-				+0.3
3,934,171	-				-0.5
3,934,179	+				-1.3
3,934,180	-				-2.7
3,934,180	-				-2.5
3,934,180	-				-1.6
3,934,180	-				-2.9
3,934,180	-				+0.8
3,934,180	-				-1.5
3,934,180	-				-1.7
3,934,180	-				-0.7
3,934,180	-				-2.1
3,934,182	+				-1.6
3,934,182	+				-0.7
3,934,183	-				-1.5
3,934,183	-				-1.5
3,934,202	+				+0.7
3,934,202	+				-0.7
3,934,202	+				-0.2
3,934,202	+				-0.1
3,934,202	+				-2.7
3,934,203	-				+0.5
3,934,205	+				+0.7
3,934,205	+				-0.7
3,934,205	+				-1.9
3,934,206	-				-0.6
3,934,206	-				+0.4
3,934,218	+				-1.9
3,934,288	+		IAI47_18495	0.12	-1.1
3,934,321	+		IAI47_18495	0.16	-1.3
3,934,449	+		IAI47_18495	0.31	+0.1
3,934,449	+		IAI47_18495	0.31	-1.3
3,934,449	+		IAI47_18495	0.31	-0.5
3,934,449	+		IAI47_18495	0.31	+0.3
3,934,449	+		IAI47_18495	0.31	+0.8
3,934,498	+		IAI47_18495	0.36	+0.8