Strain Fitness in Pantoea sp. MT58 around IAI47_13230

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,797,367	+		IAI47_13225	0.51	+0.1
2,797,367	+		IAI47_13225	0.51	+2.4
2,797,367	+		IAI47_13225	0.51	+0.6
2,797,367	+		IAI47_13225	0.51	+0.5
2,797,367	+		IAI47_13225	0.51	+0.2
2,797,368	-		IAI47_13225	0.51	+1.2
2,797,368	-		IAI47_13225	0.51	-0.9
2,797,368	-		IAI47_13225	0.51	+0.9
2,797,574	+		IAI47_13225	0.64	-0.6
2,797,669	+		IAI47_13225	0.71	-0.2
2,797,669	+		IAI47_13225	0.71	+0.2
2,797,669	+		IAI47_13225	0.71	+1.2
2,797,680	+		IAI47_13225	0.71	+1.1
2,797,785	+		IAI47_13225	0.78	-0.1
2,797,785	+		IAI47_13225	0.78	-0.5
2,797,785	+		IAI47_13225	0.78	-0.9
2,797,785	+		IAI47_13225	0.78	+2.1
2,797,785	+		IAI47_13225	0.78	+0.2
2,797,785	+		IAI47_13225	0.78	+0.6
2,797,785	+		IAI47_13225	0.78	-0.3
2,797,785	+		IAI47_13225	0.78	-0.0
2,797,785	+		IAI47_13225	0.78	+0.0
2,797,785	+		IAI47_13225	0.78	-0.8
2,797,785	+		IAI47_13225	0.78	+0.1
2,797,785	+		IAI47_13225	0.78	+1.0
2,797,785	+		IAI47_13225	0.78	-0.8
2,797,785	+		IAI47_13225	0.78	-0.8
2,797,786	-		IAI47_13225	0.78	+1.1
2,797,786	-		IAI47_13225	0.78	+1.2
2,797,786	-		IAI47_13225	0.78	-0.9
2,797,786	-		IAI47_13225	0.78	-0.2
2,797,832	-		IAI47_13225	0.81	+0.1
2,797,866	-		IAI47_13225	0.84	-0.2
2,797,866	-		IAI47_13225	0.84	+1.7
2,797,870	+		IAI47_13225	0.84	+1.2
2,797,870	+		IAI47_13225	0.84	+0.5
2,797,870	+		IAI47_13225	0.84	+0.3
2,797,871	-		IAI47_13225	0.84	+0.8
2,797,871	-		IAI47_13225	0.84	-1.0
2,797,871	-		IAI47_13225	0.84	-1.3
2,797,910	-		IAI47_13225	0.87	+1.7
2,797,910	-		IAI47_13225	0.87	-1.0
2,797,910	-		IAI47_13225	0.87	+0.0
2,797,910	-		IAI47_13225	0.87	+0.2
2,797,928	+		IAI47_13225	0.88	-0.8
2,797,937	-		IAI47_13225	0.88	-0.2
2,797,939	+		IAI47_13225	0.89	+1.5
2,797,939	+		IAI47_13225	0.89	+0.4
2,797,939	+		IAI47_13225	0.89	+1.2
2,797,939	+		IAI47_13225	0.89	+0.2
2,797,939	+		IAI47_13225	0.89	+0.7
2,797,939	+		IAI47_13225	0.89	+0.9
2,797,940	-		IAI47_13225	0.89	-0.1
2,797,947	+		IAI47_13225	0.89	-0.3
2,797,948	-		IAI47_13225	0.89	+0.4
2,797,948	-		IAI47_13225	0.89	-0.3
2,797,948	-		IAI47_13225	0.89	-1.1
2,797,953	-		IAI47_13225	0.90	-0.3
2,797,953	-		IAI47_13225	0.90	-0.8
2,798,074	+				-0.1
2,798,074	+				-1.6
2,798,075	-				+0.8
2,798,075	-				+0.6
2,798,075	-				-2.1
2,798,122	+				-0.0
2,798,122	+				+2.1
2,798,123	-				+0.2
2,798,123	-				-0.5
2,798,123	-				-0.8
2,798,123	-				-0.4
2,798,154	+				+0.0
2,798,155	-				+0.9
2,798,155	-				+1.2
2,798,155	-				-0.8
2,798,155	-				+1.2
2,798,155	-				-0.6
2,798,164	-				+0.2
2,798,235	+		IAI47_13230	0.15	+0.1
2,798,235	+		IAI47_13230	0.15	-0.4
2,798,235	+		IAI47_13230	0.15	+0.7
2,798,236	-		IAI47_13230	0.15	+1.2
2,798,236	-		IAI47_13230	0.15	+0.9
2,798,236	-		IAI47_13230	0.15	+1.0
2,798,236	-		IAI47_13230	0.15	+0.5
2,798,462	+		IAI47_13230	0.43	+2.0
2,798,532	+		IAI47_13230	0.52	+2.4
2,798,549	+		IAI47_13230	0.54	+1.2
2,798,549	+		IAI47_13230	0.54	+0.8
2,798,549	+		IAI47_13230	0.54	-0.3
2,798,549	+		IAI47_13230	0.54	+0.0
2,798,549	+		IAI47_13230	0.54	+0.4
2,798,549	+		IAI47_13230	0.54	+0.6
2,798,549	+		IAI47_13230	0.54	+1.2
2,798,549	+		IAI47_13230	0.54	+0.2
2,798,550	-		IAI47_13230	0.54	+1.8
2,798,550	-		IAI47_13230	0.54	-0.3
2,798,566	-		IAI47_13230	0.56	+1.0
2,798,578	+		IAI47_13230	0.58	+0.5
2,798,579	-		IAI47_13230	0.58	+0.2
2,798,579	-		IAI47_13230	0.58	-0.0
2,798,754	+		IAI47_13230	0.80	+0.5
2,798,754	+		IAI47_13230	0.80	+0.4
2,798,755	-		IAI47_13230	0.80	+0.9
2,798,755	-		IAI47_13230	0.80	+0.5
2,798,755	-		IAI47_13230	0.80	-0.3
2,798,769	+		IAI47_13230	0.82	-0.1
2,798,770	-		IAI47_13230	0.82	+0.1
2,798,770	-		IAI47_13230	0.82	-0.3
2,798,799	+		IAI47_13230	0.86	+1.2
2,798,799	+		IAI47_13230	0.86	+1.6
2,798,799	+		IAI47_13230	0.86	-0.5
2,798,799	+		IAI47_13230	0.86	+1.1
2,798,800	-		IAI47_13230	0.86	-0.4
2,798,800	-		IAI47_13230	0.86	+0.7
2,798,800	-		IAI47_13230	0.86	+0.2
2,798,868	+				+0.3
2,798,868	+				+1.4
2,798,868	+				-0.6
2,798,868	+				+0.1
2,798,868	+				-0.8
2,798,868	+				+0.3
2,798,868	+				+0.6
2,798,868	+				-0.3
2,798,869	-				+2.6
2,798,869	-				+0.1
2,798,869	-				-0.1
2,798,869	-				-0.2
2,798,869	-				-1.8
2,798,873	-				-0.7
2,798,938	+				+0.0
2,798,968	+				+0.5
2,798,969	-				+1.6
2,799,003	+		IAI47_13235	0.13	+0.1
2,799,003	+		IAI47_13235	0.13	-1.6
2,799,003	+		IAI47_13235	0.13	+0.2
2,799,003	+		IAI47_13235	0.13	+0.2
2,799,003	+		IAI47_13235	0.13	+0.2
2,799,004	-		IAI47_13235	0.13	+0.1
2,799,004	-		IAI47_13235	0.13	-0.5
2,799,004	-		IAI47_13235	0.13	+2.2
2,799,004	-		IAI47_13235	0.13	-0.2
2,799,004	-		IAI47_13235	0.13	-0.4
2,799,004	-		IAI47_13235	0.13	+0.7
2,799,004	-		IAI47_13235	0.13	+0.8
2,799,036	+		IAI47_13235	0.18	-0.7
2,799,036	+		IAI47_13235	0.18	-0.8
2,799,036	+		IAI47_13235	0.18	+0.7
2,799,036	+		IAI47_13235	0.18	-0.5
2,799,037	-		IAI47_13235	0.18	-0.8
2,799,037	-		IAI47_13235	0.18	+0.2
2,799,037	-		IAI47_13235	0.18	+0.0
2,799,037	-		IAI47_13235	0.18	-0.8
2,799,037	-		IAI47_13235	0.18	-0.5
2,799,037	-		IAI47_13235	0.18	+0.2
2,799,037	-		IAI47_13235	0.18	+1.1
2,799,037	-		IAI47_13235	0.18	-0.8
2,799,075	+		IAI47_13235	0.23	-0.5
2,799,075	+		IAI47_13235	0.23	-1.3
2,799,075	+		IAI47_13235	0.23	-0.0
2,799,075	+		IAI47_13235	0.23	+1.2
2,799,076	-		IAI47_13235	0.23	+0.2
2,799,079	+		IAI47_13235	0.23	+0.5
2,799,079	+		IAI47_13235	0.23	-0.8
2,799,079	+		IAI47_13235	0.23	-0.8
2,799,079	+		IAI47_13235	0.23	-0.2
2,799,080	-		IAI47_13235	0.23	-0.0
2,799,080	-		IAI47_13235	0.23	-0.8
2,799,178	-		IAI47_13235	0.37	-0.3
2,799,192	+		IAI47_13235	0.39	-1.0
2,799,318	+		IAI47_13235	0.56	+1.4
2,799,319	-		IAI47_13235	0.56	+0.3
2,799,359	-		IAI47_13235	0.61	+0.5
2,799,359	-		IAI47_13235	0.61	-0.3
2,799,423	+		IAI47_13235	0.70	-0.0
2,799,424	-		IAI47_13235	0.70	+0.2
2,799,426	+		IAI47_13235	0.70	-0.5
2,799,426	+		IAI47_13235	0.70	+0.4
2,799,427	-		IAI47_13235	0.70	+2.4
2,799,427	-		IAI47_13235	0.70	-1.8
2,799,477	+		IAI47_13235	0.77	-0.2
2,799,477	+		IAI47_13235	0.77	-0.9
2,799,478	-		IAI47_13235	0.77	-0.0
2,799,572	-		IAI47_13235	0.90	+0.7
2,799,626	-				+0.9
2,799,646	+				-0.2
2,799,646	+				+0.6
2,799,646	+				-0.4
2,799,647	-				+0.2
2,799,647	-				-0.1
2,799,657	-				-1.1
2,799,657	-				+0.2
2,799,657	-				-0.9
2,799,657	-				+0.8
2,799,657	-				+0.2
2,799,657	-				-1.1
2,799,749	+		IAI47_13240	0.13	+0.4
2,799,749	+		IAI47_13240	0.13	+0.1
2,799,750	-		IAI47_13240	0.13	+0.8
2,799,750	-		IAI47_13240	0.13	-0.3
2,799,750	-		IAI47_13240	0.13	-1.1
2,799,770	+		IAI47_13240	0.16	-0.9
2,799,771	-		IAI47_13240	0.16	-0.2
2,799,782	+		IAI47_13240	0.18	+0.2
2,799,782	+		IAI47_13240	0.18	+0.7
2,799,782	+		IAI47_13240	0.18	+0.7
2,799,783	-		IAI47_13240	0.18	+0.1
2,799,783	-		IAI47_13240	0.18	+0.2
2,799,783	-		IAI47_13240	0.18	-0.5
2,799,783	-		IAI47_13240	0.18	-2.1
2,799,792	+		IAI47_13240	0.19	+0.6
2,799,792	+		IAI47_13240	0.19	-1.8
2,799,885	+		IAI47_13240	0.32	-0.4
2,799,886	-		IAI47_13240	0.32	+0.8