Strain Fitness in Pantoea sp. MT58 around IAI47_13185

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,788,776	-		IAI47_13180	0.53	-3.6
2,788,776	-		IAI47_13180	0.53	-3.8
2,788,870	+		IAI47_13180	0.73	-2.8
2,788,871	-		IAI47_13180	0.74	-2.1
2,788,871	-		IAI47_13180	0.74	-2.6
2,788,881	+		IAI47_13180	0.76	-1.6
2,788,882	-		IAI47_13180	0.76	-3.1
2,788,937	+		IAI47_13180	0.88	-3.2
2,788,937	+		IAI47_13180	0.88	-2.3
2,788,937	+		IAI47_13180	0.88	-2.3
2,788,937	+		IAI47_13180	0.88	-3.8
2,788,938	-		IAI47_13180	0.88	-3.5
2,788,938	-		IAI47_13180	0.88	-2.3
2,788,938	-		IAI47_13180	0.88	-2.3
2,788,938	-		IAI47_13180	0.88	-2.1
2,788,938	-		IAI47_13180	0.88	-3.1
2,788,976	+				-0.8
2,788,977	-				-4.6
2,789,005	+				-2.1
2,789,005	+				-1.3
2,789,005	+				-3.1
2,789,006	-				-1.3
2,789,008	+				-3.8
2,789,008	+				-2.8
2,789,009	-				-0.4
2,789,009	-				-0.5
2,789,039	+				-2.3
2,789,039	+				-2.8
2,789,039	+				-2.1
2,789,054	+				-0.8
2,789,054	+				-1.1
2,789,054	+				-2.8
2,789,055	-				-0.6
2,789,055	-				-0.1
2,789,091	-				+0.7
2,789,107	+				-0.8
2,789,109	+				+0.8
2,789,110	-				+0.7
2,789,110	-				+0.4
2,789,110	-				+2.1
2,789,119	+				+0.2
2,789,119	+				-1.6
2,789,119	+				+0.4
2,789,120	-				-0.8
2,789,131	+				-0.1
2,789,136	+				+0.5
2,789,136	+				+0.6
2,789,136	+				-1.8
2,789,237	+				+1.6
2,789,237	+				+1.1
2,789,238	-				+0.4
2,789,243	+				-0.1
2,789,243	+				+0.4
2,789,243	+				-0.5
2,789,244	-				-0.3
2,789,266	+				-0.8
2,789,266	+				+1.2
2,789,390	+				+0.6
2,789,391	-				-0.4
2,789,420	+				-0.5
2,789,420	+				-0.3
2,789,420	+				-0.2
2,789,421	-				+0.1
2,789,421	-				+1.2
2,789,433	+				-1.0
2,789,512	+				-0.8
2,789,513	-				+0.4
2,789,513	-				-0.1
2,789,513	-				+1.0
2,789,590	+				+0.2
2,789,590	+				-0.3
2,789,590	+				+0.2
2,789,590	+				+0.9
2,789,590	+				-1.1
2,789,591	-				+0.6
2,789,591	-				+0.1
2,789,591	-				+0.2
2,789,662	+				+0.2
2,789,663	-				-0.3
2,789,663	-				+0.5
2,789,668	-				-2.1
2,789,668	-				-0.2
2,789,668	-				-3.3
2,789,674	-				+0.0
2,789,687	+				+0.1
2,789,688	-				-0.4
2,789,688	-				-0.8
2,789,720	-				-0.2
2,789,739	+		IAI47_13185	0.13	-0.4
2,789,740	-		IAI47_13185	0.13	-0.1
2,789,774	-		IAI47_13185	0.20	+1.2
2,789,853	+		IAI47_13185	0.35	-1.0
2,789,854	-		IAI47_13185	0.35	-1.1
2,789,854	-		IAI47_13185	0.35	+1.1
2,789,854	-		IAI47_13185	0.35	-0.9
2,789,854	-		IAI47_13185	0.35	-0.5
2,789,854	-		IAI47_13185	0.35	-1.1
2,789,854	-		IAI47_13185	0.35	-0.2
2,789,857	+		IAI47_13185	0.36	-1.1
2,789,857	+		IAI47_13185	0.36	-1.8
2,789,857	+		IAI47_13185	0.36	+1.8
2,789,857	+		IAI47_13185	0.36	-2.1
2,789,857	+		IAI47_13185	0.36	+1.0
2,789,857	+		IAI47_13185	0.36	-1.2
2,789,858	-		IAI47_13185	0.36	+0.4
2,789,858	-		IAI47_13185	0.36	+0.2
2,789,858	-		IAI47_13185	0.36	-2.1
2,789,858	-		IAI47_13185	0.36	-2.6
2,789,858	-		IAI47_13185	0.36	-0.9
2,789,858	-		IAI47_13185	0.36	-2.1
2,789,863	-		IAI47_13185	0.37	+0.0
2,789,883	+		IAI47_13185	0.41	+0.0
2,789,883	+		IAI47_13185	0.41	+0.2
2,789,883	+		IAI47_13185	0.41	-2.2
2,789,883	+		IAI47_13185	0.41	+0.6
2,789,883	+		IAI47_13185	0.41	+1.1
2,789,883	+		IAI47_13185	0.41	+1.8
2,789,884	-		IAI47_13185	0.41	-0.0
2,789,884	-		IAI47_13185	0.41	+0.0
2,789,884	-		IAI47_13185	0.41	-0.9
2,789,884	-		IAI47_13185	0.41	+0.2
2,789,884	-		IAI47_13185	0.41	-0.1
2,789,884	-		IAI47_13185	0.41	-0.5
2,789,884	-		IAI47_13185	0.41	-1.3
2,789,884	-		IAI47_13185	0.41	-0.4
2,789,884	-		IAI47_13185	0.41	-0.6
2,789,884	-		IAI47_13185	0.41	-3.1
2,789,884	-		IAI47_13185	0.41	+0.2
2,789,884	-		IAI47_13185	0.41	-1.3
2,789,884	-		IAI47_13185	0.41	-0.8
2,789,884	-		IAI47_13185	0.41	-0.3
2,789,884	-		IAI47_13185	0.41	+0.2
2,789,884	-		IAI47_13185	0.41	-1.1
2,789,890	+		IAI47_13185	0.42	-0.8
2,789,891	-		IAI47_13185	0.43	-0.3
2,789,934	+		IAI47_13185	0.51	-0.3
2,789,935	-		IAI47_13185	0.51	-0.6
2,789,935	-		IAI47_13185	0.51	-2.7
2,789,935	-		IAI47_13185	0.51	-2.1
2,789,935	-		IAI47_13185	0.51	+0.1
2,789,935	-		IAI47_13185	0.51	-0.3
2,789,935	-		IAI47_13185	0.51	-0.7
2,789,935	-		IAI47_13185	0.51	-0.2
2,789,938	-		IAI47_13185	0.52	-1.2
2,789,953	-		IAI47_13185	0.55	-0.4
2,789,968	+		IAI47_13185	0.58	-1.8
2,789,968	+		IAI47_13185	0.58	+0.1
2,789,969	-		IAI47_13185	0.58	+0.2
2,789,985	+		IAI47_13185	0.61	+3.1
2,789,985	+		IAI47_13185	0.61	-0.8
2,789,985	+		IAI47_13185	0.61	-1.6
2,789,985	+		IAI47_13185	0.61	-0.3
2,789,986	-		IAI47_13185	0.61	+0.4
2,789,986	-		IAI47_13185	0.61	-1.1
2,789,986	-		IAI47_13185	0.61	-0.6
2,789,986	-		IAI47_13185	0.61	-0.5
2,789,986	-		IAI47_13185	0.61	-0.4
2,789,986	-		IAI47_13185	0.61	+1.8
2,789,986	-		IAI47_13185	0.61	+0.1
2,790,016	+		IAI47_13185	0.67	-0.8
2,790,016	+		IAI47_13185	0.67	-1.6
2,790,017	-		IAI47_13185	0.67	+0.4
2,790,036	+		IAI47_13185	0.71	-1.2
2,790,037	-		IAI47_13185	0.71	-0.8
2,790,055	+		IAI47_13185	0.75	-1.3
2,790,094	-		IAI47_13185	0.82	-0.6
2,790,094	-		IAI47_13185	0.82	+0.2
2,790,105	-		IAI47_13185	0.84	-0.8
2,790,105	-		IAI47_13185	0.84	-1.0
2,790,137	+				-0.9
2,790,138	-				-0.3
2,790,138	-				-1.0
2,790,138	-				-0.5
2,790,147	-				-0.2
2,790,147	-				-0.3
2,790,156	-				-0.1
2,790,156	-				+1.4
2,790,184	+				+0.2
2,790,205	+				+1.2
2,790,205	+				+0.8
2,790,205	+				-1.8
2,790,206	-				-0.4
2,790,231	+				-1.3
2,790,231	+				-0.4
2,790,232	-				-0.2
2,790,233	+				+0.7
2,790,291	+				-0.6
2,790,312	+				-0.6
2,790,312	+				+0.2
2,790,312	+				+0.8
2,790,312	+				+0.2
2,790,312	+				-2.3
2,790,312	+				+0.1
2,790,312	+				-1.1
2,790,313	-				+0.2
2,790,313	-				+0.2
2,790,313	-				-1.8
2,790,313	-				+0.8
2,790,313	-				+0.2
2,790,315	+				+0.2
2,790,315	+				+0.9
2,790,315	+				-0.6
2,790,316	-				+0.4
2,790,316	-				+0.2
2,790,316	-				-2.1
2,790,316	-				-0.1
2,790,335	+				+0.2
2,790,358	+				-0.1
2,790,358	+				+0.8
2,790,359	-				+0.2
2,790,457	+				+0.7
2,790,457	+				+0.8
2,790,458	-				+1.2
2,790,467	+				+0.5
2,790,467	+				+0.4
2,790,468	-				+0.7
2,790,507	+				-0.4
2,790,507	+				-0.2
2,790,508	-				-0.3
2,790,508	-				+1.1
2,790,524	+				+0.3
2,790,524	+				-0.8
2,790,545	+				-0.8
2,790,722	+		IAI47_13190	0.18	+0.2
2,790,722	+		IAI47_13190	0.18	-0.0
2,790,722	+		IAI47_13190	0.18	-0.5
2,790,722	+		IAI47_13190	0.18	+1.2
2,790,723	-		IAI47_13190	0.19	-0.8
2,790,723	-		IAI47_13190	0.19	-0.5
2,790,723	-		IAI47_13190	0.19	-0.1
2,790,723	-		IAI47_13190	0.19	-0.9
2,790,723	-		IAI47_13190	0.19	-0.8
2,790,738	+		IAI47_13190	0.20	-1.8
2,790,738	+		IAI47_13190	0.20	+0.2
2,790,738	+		IAI47_13190	0.20	+1.6
2,790,738	+		IAI47_13190	0.20	+1.8
2,790,753	-		IAI47_13190	0.22	-0.2
2,790,790	+		IAI47_13190	0.26	+0.9
2,790,790	+		IAI47_13190	0.26	-1.1
2,790,790	+		IAI47_13190	0.26	-0.8
2,790,790	+		IAI47_13190	0.26	+0.2
2,790,790	+		IAI47_13190	0.26	-1.8
2,790,790	+		IAI47_13190	0.26	+0.5
2,790,790	+		IAI47_13190	0.26	-0.8
2,790,790	+		IAI47_13190	0.26	-0.5
2,790,790	+		IAI47_13190	0.26	-0.8
2,790,791	-		IAI47_13190	0.26	-0.8
2,790,791	-		IAI47_13190	0.26	+0.3
2,790,791	-		IAI47_13190	0.26	-0.6
2,790,791	-		IAI47_13190	0.26	+0.2
2,790,791	-		IAI47_13190	0.26	+1.3
2,790,791	-		IAI47_13190	0.26	-0.9
2,790,791	-		IAI47_13190	0.26	+0.6
2,790,791	-		IAI47_13190	0.26	+0.2
2,790,791	-		IAI47_13190	0.26	-0.4
2,790,791	-		IAI47_13190	0.26	+0.6
2,790,791	-		IAI47_13190	0.26	-0.9
2,790,791	-		IAI47_13190	0.26	-2.1
2,790,791	-		IAI47_13190	0.26	-0.1
2,790,791	-		IAI47_13190	0.26	-0.4
2,790,791	-		IAI47_13190	0.26	-0.3
2,790,826	+		IAI47_13190	0.30	-0.3
2,790,826	+		IAI47_13190	0.30	+0.8
2,790,826	+		IAI47_13190	0.30	+3.1
2,790,827	-		IAI47_13190	0.30	+0.7
2,790,827	-		IAI47_13190	0.30	-1.2
2,791,048	+		IAI47_13190	0.54	+1.0
2,791,048	+		IAI47_13190	0.54	-0.1
2,791,048	+		IAI47_13190	0.54	+0.2
2,791,048	+		IAI47_13190	0.54	-0.3
2,791,048	+		IAI47_13190	0.54	+0.2
2,791,048	+		IAI47_13190	0.54	-1.3
2,791,048	+		IAI47_13190	0.54	-0.3
2,791,048	+		IAI47_13190	0.54	-0.1
2,791,048	+		IAI47_13190	0.54	-0.6
2,791,048	+		IAI47_13190	0.54	+1.1
2,791,048	+		IAI47_13190	0.54	+0.9
2,791,048	+		IAI47_13190	0.54	+0.5
2,791,048	+		IAI47_13190	0.54	-0.8
2,791,048	+		IAI47_13190	0.54	+2.1
2,791,048	+		IAI47_13190	0.54	+1.1
2,791,048	+		IAI47_13190	0.54	+0.4
2,791,049	-		IAI47_13190	0.54	+0.1
2,791,049	-		IAI47_13190	0.54	-0.1
2,791,049	-		IAI47_13190	0.54	-0.5
2,791,049	-		IAI47_13190	0.54	-0.2
2,791,049	-		IAI47_13190	0.54	-0.1
2,791,049	-		IAI47_13190	0.54	-0.1
2,791,049	-		IAI47_13190	0.54	+0.2
2,791,049	-		IAI47_13190	0.54	+1.1
2,791,050	+		IAI47_13190	0.54	-0.6
2,791,051	-		IAI47_13190	0.54	-0.6
2,791,051	-		IAI47_13190	0.54	+0.2