Strain Fitness in Pantoea sp. MT58 around IAI47_12665

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,662,458	-		IAI47_12655	0.84	-1.1
2,662,458	-		IAI47_12655	0.84	+0.2
2,662,499	+		IAI47_12655	0.86	-0.8
2,662,500	-		IAI47_12655	0.86	+1.2
2,662,526	+		IAI47_12655	0.87	-1.8
2,662,527	-		IAI47_12655	0.88	+0.8
2,662,527	-		IAI47_12655	0.88	-1.8
2,662,527	-		IAI47_12655	0.88	-1.8
2,662,667	+				-0.8
2,662,667	+				-0.4
2,662,668	-				+1.2
2,662,685	+				+0.2
2,662,685	+				-1.2
2,662,686	-				-1.4
2,662,740	-				-1.8
2,662,749	-				-1.0
2,662,749	-				-2.1
2,662,777	+				+0.6
2,662,777	+				+1.1
2,662,777	+				-0.5
2,662,777	+				-2.4
2,662,793	+				-0.1
2,662,793	+				+0.2
2,663,332	+				-0.4
2,663,332	+				-2.9
2,663,390	+				+0.2
2,663,390	+				-0.5
2,663,390	+				+0.6
2,663,390	+				+0.5
2,663,391	-				+0.3
2,663,392	+				+0.8
2,663,392	+				+0.5
2,663,392	+				+0.4
2,663,392	+				-0.0
2,663,392	+				-0.0
2,663,393	-				+0.8
2,663,393	-				+0.4
2,663,418	-				-2.1
2,663,425	+				+0.4
2,663,425	+				+0.5
2,663,426	-				-0.3
2,663,475	+		IAI47_12665	0.35	-0.8
2,663,475	+		IAI47_12665	0.35	-1.1
2,663,475	+		IAI47_12665	0.35	+0.2
2,663,476	-		IAI47_12665	0.36	-0.5
2,663,476	-		IAI47_12665	0.36	+0.1
2,663,492	+		IAI47_12665	0.45	-0.4
2,663,492	+		IAI47_12665	0.45	-0.7
2,663,521	-		IAI47_12665	0.62	+0.2
2,663,521	-		IAI47_12665	0.62	-1.2
2,663,535	-		IAI47_12665	0.71	-0.2
2,663,583	+				+0.2
2,663,583	+				+0.8
2,663,583	+				-0.1
2,663,584	-				+0.8
2,663,601	+				+0.2
2,663,601	+				+0.6
2,663,601	+				-1.0
2,663,601	+				-0.1
2,663,601	+				-0.0
2,663,601	+				-1.0
2,663,602	-				-0.0
2,663,602	-				+0.4
2,663,602	-				-0.2
2,663,602	-				-1.4
2,663,602	-				-0.6
2,663,640	+				-1.8
2,663,640	+				+0.6
2,663,640	+				+0.2
2,663,657	+				-0.6
2,663,657	+				+0.8
2,663,657	+				-1.4
2,663,657	+				+0.2
2,663,658	-				-1.0
2,663,658	-				+0.2
2,663,658	-				-1.9
2,663,658	-				+1.6
2,663,665	-				-0.2
2,663,713	+				-0.8
2,663,726	-				-0.9
2,663,782	-				-0.3
2,663,845	+				+1.2
2,663,846	-				-0.0
2,663,846	-				+0.2
2,663,846	-				-0.6
2,663,846	-				+0.4
2,663,849	+				-0.8
2,663,850	-				+0.2
2,663,850	-				-0.8
2,663,858	+				+0.0
2,663,859	-				-0.6
2,663,864	+				+1.0
2,663,929	-		IAI47_12670	0.12	+0.0
2,663,929	-		IAI47_12670	0.12	+1.8
2,663,937	+		IAI47_12670	0.13	-0.4
2,663,937	+		IAI47_12670	0.13	+0.2
2,663,937	+		IAI47_12670	0.13	+1.5
2,663,938	-		IAI47_12670	0.13	-0.8
2,663,938	-		IAI47_12670	0.13	-0.1
2,663,938	-		IAI47_12670	0.13	-0.4
2,663,938	-		IAI47_12670	0.13	-0.8
2,663,938	-		IAI47_12670	0.13	-1.2
2,663,945	+		IAI47_12670	0.14	+0.9
2,663,945	+		IAI47_12670	0.14	-0.1
2,663,945	+		IAI47_12670	0.14	+0.1
2,663,945	+		IAI47_12670	0.14	+2.2
2,663,946	-		IAI47_12670	0.15	-0.2
2,663,946	-		IAI47_12670	0.15	+1.0
2,663,946	-		IAI47_12670	0.15	+0.5
2,663,946	-		IAI47_12670	0.15	-0.1
2,663,976	+		IAI47_12670	0.20	-0.8
2,663,976	+		IAI47_12670	0.20	+0.2
2,663,989	-		IAI47_12670	0.22	-1.8
2,663,989	-		IAI47_12670	0.22	+0.8
2,664,047	+		IAI47_12670	0.32	-0.5
2,664,047	+		IAI47_12670	0.32	-0.5
2,664,047	+		IAI47_12670	0.32	+0.8
2,664,047	+		IAI47_12670	0.32	+0.9
2,664,047	+		IAI47_12670	0.32	-0.6
2,664,078	+		IAI47_12670	0.38	+0.8
2,664,079	-		IAI47_12670	0.38	+0.2
2,664,084	+		IAI47_12670	0.39	+0.4
2,664,084	+		IAI47_12670	0.39	-0.1
2,664,085	-		IAI47_12670	0.39	+0.8
2,664,085	-		IAI47_12670	0.39	+0.6
2,664,085	-		IAI47_12670	0.39	+0.8
2,664,148	-		IAI47_12670	0.50	+0.7
2,664,198	+		IAI47_12670	0.59	-0.2
2,664,199	-		IAI47_12670	0.59	-0.5
2,664,199	-		IAI47_12670	0.59	+1.0
2,664,215	+		IAI47_12670	0.62	-0.6
2,664,215	+		IAI47_12670	0.62	+1.1
2,664,215	+		IAI47_12670	0.62	-0.4
2,664,215	+		IAI47_12670	0.62	+0.8
2,664,215	+		IAI47_12670	0.62	+0.5
2,664,215	+		IAI47_12670	0.62	+3.2
2,664,216	-		IAI47_12670	0.62	+0.4
2,664,216	-		IAI47_12670	0.62	-0.4
2,664,216	-		IAI47_12670	0.62	-1.1
2,664,216	-		IAI47_12670	0.62	+1.6
2,664,216	-		IAI47_12670	0.62	-0.6
2,664,216	-		IAI47_12670	0.62	+0.3
2,664,216	-		IAI47_12670	0.62	-0.1
2,664,216	-		IAI47_12670	0.62	-0.1
2,664,216	-		IAI47_12670	0.62	+0.1
2,664,216	-		IAI47_12670	0.62	-1.4
2,664,216	-		IAI47_12670	0.62	+0.7
2,664,216	-		IAI47_12670	0.62	-0.4
2,664,216	-		IAI47_12670	0.62	+0.1
2,664,236	+		IAI47_12670	0.65	+0.1
2,664,237	-		IAI47_12670	0.66	+0.7
2,664,261	-		IAI47_12670	0.70	+0.1
2,664,261	-		IAI47_12670	0.70	-0.1
2,664,359	+		IAI47_12670	0.87	+3.0
2,664,366	+		IAI47_12670	0.88	-0.1
2,664,367	-		IAI47_12670	0.88	+1.2
2,664,367	-		IAI47_12670	0.88	+0.2
2,664,381	+				-0.2
2,664,381	+				+0.9
2,664,381	+				-0.2
2,664,382	-				+0.9
2,664,394	+				-1.3
2,664,395	-				-0.6
2,664,395	-				+1.2
2,664,395	-				-0.1
2,664,415	+				-0.4
2,664,415	+				+0.8
2,664,415	+				-0.4
2,664,416	-				+1.2
2,664,416	-				+0.3
2,664,416	-				-0.3
2,664,480	+				-0.3
2,664,480	+				+0.3
2,664,481	-				-1.8
2,664,481	-				-0.8
2,664,497	+				-0.8
2,664,497	+				-0.4
2,664,497	+				+0.0
2,664,497	+				-0.8
2,664,498	-				-0.8
2,664,498	-				-0.5
2,664,498	-				+3.2
2,664,498	-				-0.4
2,664,498	-				+1.0
2,664,498	-				-1.2
2,664,498	-				-0.1
2,664,538	-				+1.2
2,664,538	-				+1.8
2,664,538	-				+0.1
2,664,558	-				-2.1
2,664,565	-				+0.0
2,664,577	+				+0.2
2,664,578	-				-0.3
2,664,578	-				-0.5