Strain Fitness in Pantoea sp. MT58 around IAI47_10790

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,277,842	+				+1.2
2,277,842	+				-0.8
2,277,845	+				-1.4
2,277,846	-				+1.4
2,277,846	-				-0.1
2,277,859	-				-0.2
2,277,859	-				-0.6
2,277,867	+				-0.4
2,277,881	+				-0.1
2,277,881	+				-1.1
2,277,882	-				+0.5
2,277,938	+				-0.6
2,277,955	+				-0.1
2,277,955	+				+0.4
2,277,955	+				+0.1
2,277,955	+				+0.5
2,277,955	+				+0.6
2,277,955	+				+1.3
2,277,956	-				+0.2
2,277,956	-				+1.0
2,277,956	-				+0.8
2,277,956	-				+2.2
2,277,956	-				+1.2
2,277,956	-				+0.6
2,277,956	-				+1.1
2,277,959	+				-0.2
2,277,960	-				+0.2
2,277,960	-				-0.0
2,277,960	-				-0.4
2,277,960	-				+0.2
2,277,960	-				+0.4
2,277,971	+				+0.8
2,277,971	+				+1.5
2,277,972	-				+0.0
2,277,972	-				+0.5
2,277,979	+				+0.5
2,277,979	+				-0.1
2,277,986	+				+0.2
2,277,986	+				-1.4
2,277,986	+				+0.2
2,278,064	+				+2.2
2,278,064	+				+1.9
2,278,065	-				+1.5
2,278,070	+				+0.4
2,278,070	+				+0.8
2,278,070	+				+0.3
2,278,070	+				-0.8
2,278,071	-				-0.3
2,278,220	+		IAI47_10785	0.28	+1.1
2,278,220	+		IAI47_10785	0.28	-0.7
2,278,220	+		IAI47_10785	0.28	+0.2
2,278,221	-		IAI47_10785	0.29	+0.8
2,278,221	-		IAI47_10785	0.29	+1.2
2,278,221	-		IAI47_10785	0.29	+0.2
2,278,235	+		IAI47_10785	0.30	-0.0
2,278,236	-		IAI47_10785	0.31	-2.1
2,278,236	-		IAI47_10785	0.31	+0.2
2,278,247	+		IAI47_10785	0.32	+1.8
2,278,248	-		IAI47_10785	0.32	-0.3
2,278,249	+		IAI47_10785	0.32	+0.2
2,278,249	+		IAI47_10785	0.32	-0.1
2,278,249	+		IAI47_10785	0.32	+1.3
2,278,249	+		IAI47_10785	0.32	+0.8
2,278,249	+		IAI47_10785	0.32	+1.1
2,278,250	-		IAI47_10785	0.32	+0.2
2,278,250	-		IAI47_10785	0.32	+0.2
2,278,250	-		IAI47_10785	0.32	-0.4
2,278,287	+		IAI47_10785	0.37	+0.2
2,278,347	-		IAI47_10785	0.45	-0.7
2,278,488	+		IAI47_10785	0.63	+0.7
2,278,488	+		IAI47_10785	0.63	+0.7
2,278,489	-		IAI47_10785	0.63	+0.4
2,278,489	-		IAI47_10785	0.63	+0.5
2,278,494	+		IAI47_10785	0.63	-0.0
2,278,494	+		IAI47_10785	0.63	+1.6
2,278,494	+		IAI47_10785	0.63	+1.0
2,278,495	-		IAI47_10785	0.63	+1.2
2,278,496	+		IAI47_10785	0.64	+0.5
2,278,496	+		IAI47_10785	0.64	+0.8
2,278,497	-		IAI47_10785	0.64	+1.6
2,278,497	-		IAI47_10785	0.64	+0.7
2,278,515	-		IAI47_10785	0.66	+1.3
2,278,515	-		IAI47_10785	0.66	+0.4
2,278,542	+		IAI47_10785	0.69	+0.9
2,278,542	+		IAI47_10785	0.69	+0.2
2,278,542	+		IAI47_10785	0.69	+1.4
2,278,542	+		IAI47_10785	0.69	+0.6
2,278,542	+		IAI47_10785	0.69	+0.8
2,278,542	+		IAI47_10785	0.69	-0.2
2,278,542	+		IAI47_10785	0.69	+0.1
2,278,542	+		IAI47_10785	0.69	+0.8
2,278,542	+		IAI47_10785	0.69	+0.9
2,278,543	-		IAI47_10785	0.70	-0.2
2,278,543	-		IAI47_10785	0.70	+0.2
2,278,543	-		IAI47_10785	0.70	+0.4
2,278,543	-		IAI47_10785	0.70	+0.2
2,278,611	-		IAI47_10785	0.78	+1.5
2,278,613	+		IAI47_10785	0.78	+0.7
2,278,614	-		IAI47_10785	0.79	+0.8
2,278,614	-		IAI47_10785	0.79	+0.8
2,278,648	-		IAI47_10785	0.83	-1.4
2,278,667	+		IAI47_10785	0.85	+0.2
2,278,722	+				+1.5
2,278,722	+				+0.4
2,278,723	-				+1.4
2,278,723	-				+0.4
2,278,737	+				+0.2
2,278,737	+				+1.0
2,278,737	+				+1.4
2,278,737	+				+1.5
2,278,737	+				+0.5
2,278,737	+				-0.4
2,278,738	-				+0.9
2,278,738	-				-0.1
2,278,774	+				+1.0
2,278,796	+				+0.8
2,278,797	-				-2.3
2,278,842	+		IAI47_10790	0.19	-0.7
2,278,848	+		IAI47_10790	0.26	-0.8
2,278,848	+		IAI47_10790	0.26	-0.5
2,278,855	+		IAI47_10790	0.33	+0.9
2,278,855	+		IAI47_10790	0.33	+0.2
2,278,856	-		IAI47_10790	0.34	+0.2
2,278,856	-		IAI47_10790	0.34	-1.1
2,278,856	-		IAI47_10790	0.34	-0.4
2,278,856	-		IAI47_10790	0.34	-0.1
2,278,888	+		IAI47_10790	0.70	-1.2
2,278,889	-		IAI47_10790	0.71	+0.9
2,278,889	-		IAI47_10790	0.71	-0.6
2,278,899	+		IAI47_10790	0.82	-0.3
2,278,900	-		IAI47_10790	0.83	+0.2
2,278,908	+				-1.4
2,278,926	+				+1.2
2,279,003	+				-1.1
2,279,003	+				+0.9
2,279,003	+				+1.8
2,279,003	+				+1.0
2,279,003	+				+0.2
2,279,003	+				+1.3
2,279,004	-				+0.8
2,279,159	+				+0.9
2,279,164	+				-0.1
2,279,170	+				+0.4
2,279,171	-				-1.4
2,279,174	+				-0.0
2,279,207	+				-1.0
2,279,207	+				-0.6
2,279,208	-				-0.4
2,279,265	-				-1.4
2,279,265	-				-1.4
2,279,265	-				-1.7
2,279,329	-		IAI47_10795	0.13	-1.8
2,279,329	-		IAI47_10795	0.13	-1.4
2,279,412	+		IAI47_10795	0.21	-1.4
2,279,426	+		IAI47_10795	0.22	-1.3
2,279,463	+		IAI47_10795	0.26	-0.8
2,279,464	-		IAI47_10795	0.26	-2.0
2,279,465	+		IAI47_10795	0.26	-0.8
2,279,465	+		IAI47_10795	0.26	-1.0
2,279,514	+		IAI47_10795	0.31	-0.1
2,279,515	-		IAI47_10795	0.31	-2.3
2,279,609	+		IAI47_10795	0.40	+1.2
2,279,612	+		IAI47_10795	0.41	-3.1
2,279,694	+		IAI47_10795	0.49	-0.4
2,279,694	+		IAI47_10795	0.49	-1.8
2,279,694	+		IAI47_10795	0.49	-1.1
2,279,744	+		IAI47_10795	0.53	-1.1
2,279,744	+		IAI47_10795	0.53	-2.1
2,279,744	+		IAI47_10795	0.53	-0.8
2,279,819	+		IAI47_10795	0.61	-1.1
2,279,820	-		IAI47_10795	0.61	-1.4
2,279,820	-		IAI47_10795	0.61	-1.6