Strain Fitness in Pantoea sp. MT58 around IAI47_09600

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,029,362	+		IAI47_09595	0.31	-0.6
2,029,362	+		IAI47_09595	0.31	+0.2
2,029,363	-		IAI47_09595	0.31	+0.7
2,029,363	-		IAI47_09595	0.31	+0.6
2,029,391	+		IAI47_09595	0.33	-1.8
2,029,391	+		IAI47_09595	0.33	+0.4
2,029,392	-		IAI47_09595	0.33	+0.7
2,029,392	-		IAI47_09595	0.33	-0.0
2,029,470	-		IAI47_09595	0.39	+0.2
2,029,470	-		IAI47_09595	0.39	-0.0
2,029,489	+		IAI47_09595	0.41	+0.3
2,029,490	-		IAI47_09595	0.41	+0.8
2,029,501	+		IAI47_09595	0.42	+0.7
2,029,501	+		IAI47_09595	0.42	+0.5
2,029,501	+		IAI47_09595	0.42	-0.1
2,029,502	-		IAI47_09595	0.42	-0.0
2,029,502	-		IAI47_09595	0.42	+0.2
2,029,525	+		IAI47_09595	0.43	-1.8
2,029,525	+		IAI47_09595	0.43	-0.6
2,029,525	+		IAI47_09595	0.43	-0.1
2,029,525	+		IAI47_09595	0.43	-0.3
2,029,707	+		IAI47_09595	0.57	+0.2
2,029,708	-		IAI47_09595	0.57	+0.2
2,029,708	-		IAI47_09595	0.57	-1.3
2,029,740	+		IAI47_09595	0.60	+0.4
2,029,740	+		IAI47_09595	0.60	+1.1
2,029,740	+		IAI47_09595	0.60	-0.1
2,029,741	-		IAI47_09595	0.60	+0.7
2,029,745	+		IAI47_09595	0.60	-0.8
2,029,745	+		IAI47_09595	0.60	-0.4
2,029,746	-		IAI47_09595	0.60	-0.1
2,029,764	+		IAI47_09595	0.61	+0.8
2,029,764	+		IAI47_09595	0.61	-0.6
2,029,764	+		IAI47_09595	0.61	-0.1
2,029,765	-		IAI47_09595	0.61	+0.3
2,029,765	-		IAI47_09595	0.61	+1.0
2,029,765	-		IAI47_09595	0.61	-0.7
2,029,833	-		IAI47_09595	0.67	-0.5
2,029,845	+		IAI47_09595	0.67	-0.2
2,029,845	+		IAI47_09595	0.67	+0.7
2,029,845	+		IAI47_09595	0.67	+0.5
2,029,845	+		IAI47_09595	0.67	+0.2
2,029,846	-		IAI47_09595	0.67	-1.0
2,029,846	-		IAI47_09595	0.67	+0.2
2,029,902	-		IAI47_09595	0.72	-1.1
2,029,929	+		IAI47_09595	0.74	+1.4
2,029,930	-		IAI47_09595	0.74	+0.6
2,029,930	-		IAI47_09595	0.74	+0.2
2,029,930	-		IAI47_09595	0.74	+2.2
2,030,064	+		IAI47_09595	0.84	-0.7
2,030,064	+		IAI47_09595	0.84	-1.8
2,030,064	+		IAI47_09595	0.84	-1.0
2,030,064	+		IAI47_09595	0.84	-0.6
2,030,064	+		IAI47_09595	0.84	+0.4
2,030,064	+		IAI47_09595	0.84	+2.5
2,030,064	+		IAI47_09595	0.84	-0.3
2,030,064	+		IAI47_09595	0.84	+2.8
2,030,065	-		IAI47_09595	0.84	-0.1
2,030,065	-		IAI47_09595	0.84	+0.4
2,030,065	-		IAI47_09595	0.84	-0.4
2,030,065	-		IAI47_09595	0.84	-0.8
2,030,067	+		IAI47_09595	0.84	-0.1
2,030,067	+		IAI47_09595	0.84	-1.4
2,030,067	+		IAI47_09595	0.84	+0.3
2,030,067	+		IAI47_09595	0.84	-0.2
2,030,068	-		IAI47_09595	0.84	+0.9
2,030,068	-		IAI47_09595	0.84	-2.8
2,030,068	-		IAI47_09595	0.84	+0.7
2,030,068	-		IAI47_09595	0.84	+0.9
2,030,186	+				-0.5
2,030,222	+				+0.6
2,030,258	+				-0.6
2,030,258	+				+0.8
2,030,309	+				+1.2
2,030,309	+				-0.2
2,030,309	+				+0.6
2,030,310	-				-1.1
2,030,310	-				-0.6
2,030,310	-				-0.1
2,030,314	+				+0.4
2,030,315	-				-1.3
2,030,315	-				-0.8
2,030,343	+				-0.8
2,030,344	-				-1.1
2,030,344	-				+0.2
2,030,358	+				+0.2
2,030,410	+				+0.2
2,030,410	+				-1.5
2,030,410	+				+2.0
2,030,410	+				-0.8
2,030,410	+				+0.5
2,030,410	+				+0.2
2,030,410	+				+0.4
2,030,410	+				+0.2
2,030,410	+				-0.8
2,030,410	+				-0.6
2,030,410	+				+0.8
2,030,410	+				-0.8
2,030,410	+				+2.2
2,030,411	-				+2.2
2,030,411	-				+0.8
2,030,411	-				-0.4
2,030,411	-				-0.0
2,030,411	-				+0.2
2,030,411	-				-1.0
2,030,411	-				+0.2
2,030,411	-				-0.7
2,030,411	-				-1.0
2,030,431	+				-1.4
2,030,432	-				+0.8
2,030,457	+				-0.4
2,030,457	+				-1.6
2,030,474	+				-2.1
2,030,474	+				-0.4
2,030,475	-				+0.4
2,030,508	+		IAI47_09600	0.12	-0.4
2,030,535	+		IAI47_09600	0.14	+0.2
2,030,536	-		IAI47_09600	0.14	-0.8
2,030,536	-		IAI47_09600	0.14	+0.2
2,030,536	-		IAI47_09600	0.14	-0.2
2,030,632	+		IAI47_09600	0.21	-0.6
2,030,632	+		IAI47_09600	0.21	+1.2
2,030,632	+		IAI47_09600	0.21	-2.0
2,030,633	-		IAI47_09600	0.21	+0.9
2,030,635	+		IAI47_09600	0.21	-1.4
2,030,636	-		IAI47_09600	0.22	-0.1
2,030,687	+		IAI47_09600	0.25	-1.6
2,030,687	+		IAI47_09600	0.25	-0.3
2,030,727	+		IAI47_09600	0.28	-1.3
2,030,727	+		IAI47_09600	0.28	-0.3
2,030,727	+		IAI47_09600	0.28	+0.4
2,030,728	-		IAI47_09600	0.28	-1.7
2,030,728	-		IAI47_09600	0.28	-0.8
2,030,728	-		IAI47_09600	0.28	-1.4
2,030,728	-		IAI47_09600	0.28	-1.8
2,030,739	-		IAI47_09600	0.29	+1.2
2,030,739	-		IAI47_09600	0.29	-0.8
2,030,832	-		IAI47_09600	0.36	-1.0
2,030,934	-		IAI47_09600	0.44	-0.6
2,030,948	-		IAI47_09600	0.45	+0.2
2,030,987	+		IAI47_09600	0.48	+1.8
2,030,987	+		IAI47_09600	0.48	-1.4
2,030,987	+		IAI47_09600	0.48	+0.2
2,030,987	+		IAI47_09600	0.48	-0.1
2,030,988	-		IAI47_09600	0.48	+1.6
2,030,988	-		IAI47_09600	0.48	-0.0
2,030,988	-		IAI47_09600	0.48	+0.2
2,030,988	-		IAI47_09600	0.48	-0.2
2,030,988	-		IAI47_09600	0.48	-1.2
2,030,988	-		IAI47_09600	0.48	-0.3
2,030,988	-		IAI47_09600	0.48	-0.6
2,030,988	-		IAI47_09600	0.48	-1.1
2,031,021	+		IAI47_09600	0.50	+1.2
2,031,021	+		IAI47_09600	0.50	-1.3
2,031,021	+		IAI47_09600	0.50	-0.6
2,031,022	-		IAI47_09600	0.50	-1.6
2,031,022	-		IAI47_09600	0.50	-0.4
2,031,022	-		IAI47_09600	0.50	-0.3
2,031,131	+		IAI47_09600	0.58	-1.3
2,031,131	+		IAI47_09600	0.58	-0.8
2,031,132	-		IAI47_09600	0.58	+0.2
2,031,147	+		IAI47_09600	0.60	-1.2
2,031,148	-		IAI47_09600	0.60	-0.3
2,031,174	+		IAI47_09600	0.62	-0.2
2,031,174	+		IAI47_09600	0.62	+0.9
2,031,174	+		IAI47_09600	0.62	-0.7
2,031,175	-		IAI47_09600	0.62	-1.8
2,031,175	-		IAI47_09600	0.62	-0.6
2,031,199	-		IAI47_09600	0.63	-0.3
2,031,262	+		IAI47_09600	0.68	-1.0
2,031,263	-		IAI47_09600	0.68	+0.0
2,031,301	-		IAI47_09600	0.71	+0.8
2,031,301	-		IAI47_09600	0.71	-0.2
2,031,301	-		IAI47_09600	0.71	-2.4
2,031,394	+		IAI47_09600	0.78	-2.8
2,031,414	+		IAI47_09600	0.79	-0.8
2,031,414	+		IAI47_09600	0.79	-0.6
2,031,415	-		IAI47_09600	0.79	+0.2
2,031,420	+		IAI47_09600	0.80	-0.4
2,031,420	+		IAI47_09600	0.80	-0.4
2,031,420	+		IAI47_09600	0.80	-1.0
2,031,420	+		IAI47_09600	0.80	+0.5
2,031,420	+		IAI47_09600	0.80	-1.7
2,031,421	-		IAI47_09600	0.80	-1.7
2,031,421	-		IAI47_09600	0.80	-0.8
2,031,457	-		IAI47_09600	0.83	+0.2
2,031,457	-		IAI47_09600	0.83	-0.1
2,031,457	-		IAI47_09600	0.83	-0.8
2,031,474	-		IAI47_09600	0.84	+1.2
2,031,493	+		IAI47_09600	0.85	-0.1
2,031,493	+		IAI47_09600	0.85	-0.2
2,031,493	+		IAI47_09600	0.85	+0.2
2,031,494	-		IAI47_09600	0.85	+0.0
2,031,494	-		IAI47_09600	0.85	-1.4
2,031,494	-		IAI47_09600	0.85	-1.6
2,031,537	+		IAI47_09600	0.89	-1.0
2,031,537	+		IAI47_09600	0.89	-0.2
2,031,537	+		IAI47_09600	0.89	-0.8
2,031,635	+				+0.4
2,031,635	+				-0.3
2,031,635	+				+1.2
2,031,635	+				+1.6
2,031,636	-				-1.7
2,031,637	+				+0.2
2,031,637	+				-1.7
2,031,637	+				+0.2
2,031,637	+				-0.6
2,031,637	+				-1.2
2,031,637	+				+0.2
2,031,637	+				-1.4
2,031,638	-				-1.4
2,031,638	-				-0.0
2,031,638	-				+1.2
2,031,699	-				+0.2
2,031,699	-				+1.0
2,031,711	+				+0.2
2,031,711	+				-0.4
2,031,711	+				-1.6
2,031,712	-				+0.5
2,031,712	-				-0.3
2,031,748	+				+0.1
2,031,749	-				-0.2
2,031,772	+				+0.4
2,031,875	+				-0.1
2,031,876	-				-2.1
2,031,876	-				+0.2
2,031,876	-				+0.2
2,031,885	-				+0.7
2,031,957	+				+0.2
2,031,957	+				+0.2
2,031,958	-				+0.4
2,031,968	-				+0.0
2,032,013	+				-0.8
2,032,014	-				-0.8
2,032,014	-				+1.2
2,032,039	+				-1.2
2,032,059	+				-0.5
2,032,060	-				+2.2
2,032,070	+				-1.2
2,032,070	+				+0.3
2,032,070	+				-0.4
2,032,071	-				+0.6
2,032,071	-				-0.8
2,032,071	-				-0.2
2,032,088	+				-0.8
2,032,089	-				+0.8
2,032,089	-				+0.5
2,032,104	-				+0.2
2,032,166	+				+0.7
2,032,167	-				+0.4
2,032,167	-				-0.8
2,032,167	-				+0.9
2,032,196	+				-0.1
2,032,197	-				+0.2
2,032,200	+				+0.7
2,032,200	+				-0.3
2,032,200	+				-0.0
2,032,200	+				-0.6
2,032,200	+				-0.4
2,032,208	+				-0.8
2,032,208	+				-2.6
2,032,208	+				+0.7
2,032,208	+				+0.7
2,032,208	+				+0.6
2,032,209	-				+0.6
2,032,209	-				-0.9
2,032,209	-				+1.2
2,032,209	-				-0.4
2,032,209	-				-0.1
2,032,209	-				-0.8
2,032,213	+				-0.4
2,032,213	+				-0.1
2,032,239	-				+2.8
2,032,265	+				+0.4
2,032,265	+				-0.8
2,032,265	+				-0.2
2,032,265	+				+0.2
2,032,327	+		IAI47_09605	0.14	-0.7
2,032,327	+		IAI47_09605	0.14	+0.3
2,032,328	-		IAI47_09605	0.14	+0.2
2,032,328	-		IAI47_09605	0.14	+0.6
2,032,328	-		IAI47_09605	0.14	-1.8
2,032,366	-		IAI47_09605	0.16	-0.3
2,032,381	+		IAI47_09605	0.17	-0.3
2,032,382	-		IAI47_09605	0.17	-0.5
2,032,456	+		IAI47_09605	0.22	-0.3
2,032,456	+		IAI47_09605	0.22	+0.6
2,032,457	-		IAI47_09605	0.22	-0.5
2,032,457	-		IAI47_09605	0.22	+0.4
2,032,486	+		IAI47_09605	0.24	+0.8
2,032,486	+		IAI47_09605	0.24	+0.5
2,032,486	+		IAI47_09605	0.24	+0.4
2,032,533	+		IAI47_09605	0.27	-0.7
2,032,533	+		IAI47_09605	0.27	+0.3
2,032,534	-		IAI47_09605	0.27	+2.5
2,032,538	-		IAI47_09605	0.27	+0.2
2,032,607	+		IAI47_09605	0.32	+1.2