Strain Fitness in Pantoea sp. MT58 around IAI47_09460

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,995,793	+		IAI47_09450	0.86	-1.4
1,995,793	+		IAI47_09450	0.86	-0.8
1,995,794	-		IAI47_09450	0.86	-0.2
1,995,905	+				-0.3
1,995,905	+				+0.5
1,995,927	+				+0.5
1,995,927	+				+1.1
1,995,927	+				+0.2
1,995,927	+				+0.6
1,995,927	+				+0.3
1,995,927	+				-0.6
1,995,928	-				+1.2
1,995,928	-				-0.3
1,995,928	-				+0.4
1,995,928	-				+0.2
1,995,944	+				+1.5
1,995,945	-				-0.0
1,996,013	+		IAI47_09455	0.15	-0.2
1,996,013	+		IAI47_09455	0.15	+0.8
1,996,013	+		IAI47_09455	0.15	-1.1
1,996,013	+		IAI47_09455	0.15	+0.5
1,996,125	+		IAI47_09455	0.31	+0.5
1,996,125	+		IAI47_09455	0.31	+0.3
1,996,126	-		IAI47_09455	0.31	+0.5
1,996,126	-		IAI47_09455	0.31	+0.5
1,996,168	-		IAI47_09455	0.37	-1.4
1,996,177	+		IAI47_09455	0.39	+0.1
1,996,177	+		IAI47_09455	0.39	+0.7
1,996,178	-		IAI47_09455	0.39	-0.4
1,996,178	-		IAI47_09455	0.39	+0.1
1,996,178	-		IAI47_09455	0.39	+0.8
1,996,178	-		IAI47_09455	0.39	-0.7
1,996,178	-		IAI47_09455	0.39	-0.8
1,996,553	+				+1.2
1,996,554	-				-0.8
1,996,612	-				-0.0
1,996,612	-				-0.8
1,996,612	-				-0.1
1,996,612	-				-0.2
1,996,634	-				+0.6
1,996,634	-				-0.3
1,996,668	-				-0.0
1,996,668	-				-0.7
1,996,671	+				+0.0
1,996,671	+				-0.2
1,996,671	+				-0.8
1,996,671	+				-0.7
1,996,672	-				+0.2
1,996,672	-				+0.1
1,996,672	-				-1.0
1,996,672	-				-0.0
1,996,672	-				-0.1
1,996,672	-				-2.8
1,996,672	-				-0.0
1,996,672	-				+0.7
1,996,675	+				+0.1
1,996,675	+				+0.2
1,996,675	+				-0.3
1,996,675	+				+0.8
1,996,675	+				+0.2
1,996,676	-				-0.3
1,996,696	-				-0.4
1,996,714	+				+0.2
1,996,714	+				+1.1
1,996,726	-				+0.7
1,996,752	-				-0.0
1,996,763	-				+0.4
1,996,770	-				-0.9
1,996,781	+				+0.0
1,996,840	+				-0.9
1,996,886	+				-0.4
1,996,887	-				+0.8
1,996,887	-				-0.5
1,996,889	+				+1.0
1,996,889	+				-0.4
1,996,889	+				+0.8
1,996,889	+				+0.6
1,996,890	-				-0.8
1,996,928	-		IAI47_09460	0.10	-0.8
1,997,115	+		IAI47_09460	0.22	+0.5
1,997,116	-		IAI47_09460	0.22	+1.2
1,997,403	+		IAI47_09460	0.39	-0.2
1,997,404	-		IAI47_09460	0.40	-0.0
1,997,404	-		IAI47_09460	0.40	-1.0
1,997,404	-		IAI47_09460	0.40	+0.3
1,997,451	-		IAI47_09460	0.42	+0.4
1,997,460	+		IAI47_09460	0.43	+0.0
1,997,460	+		IAI47_09460	0.43	-0.8
1,997,531	+		IAI47_09460	0.47	-0.1
1,997,558	+		IAI47_09460	0.49	-0.4
1,997,558	+		IAI47_09460	0.49	-0.1
1,997,586	+		IAI47_09460	0.51	+2.2
1,997,586	+		IAI47_09460	0.51	+0.2
1,997,586	+		IAI47_09460	0.51	+0.2
1,997,586	+		IAI47_09460	0.51	-0.4
1,997,586	+		IAI47_09460	0.51	-0.8
1,997,586	+		IAI47_09460	0.51	-1.1
1,997,586	+		IAI47_09460	0.51	-0.1
1,997,586	+		IAI47_09460	0.51	-0.8
1,997,586	+		IAI47_09460	0.51	+0.8
1,997,586	+		IAI47_09460	0.51	-2.1
1,997,586	+		IAI47_09460	0.51	+1.8
1,997,586	+		IAI47_09460	0.51	+0.6
1,997,586	+		IAI47_09460	0.51	-0.6
1,997,587	-		IAI47_09460	0.51	+0.0
1,997,587	-		IAI47_09460	0.51	-0.3
1,997,587	-		IAI47_09460	0.51	-1.1
1,997,587	-		IAI47_09460	0.51	+0.7
1,997,587	-		IAI47_09460	0.51	+0.0
1,997,587	-		IAI47_09460	0.51	-0.3
1,997,587	-		IAI47_09460	0.51	-0.5
1,997,587	-		IAI47_09460	0.51	-0.1
1,997,587	-		IAI47_09460	0.51	-0.0
1,997,587	-		IAI47_09460	0.51	-0.1
1,997,587	-		IAI47_09460	0.51	+0.2
1,997,587	-		IAI47_09460	0.51	+1.2
1,997,587	-		IAI47_09460	0.51	+0.9
1,997,587	-		IAI47_09460	0.51	-1.5
1,997,587	-		IAI47_09460	0.51	-0.5
1,997,587	-		IAI47_09460	0.51	-0.4
1,997,596	+		IAI47_09460	0.51	+0.8
1,997,622	+		IAI47_09460	0.53	+1.7
1,997,622	+		IAI47_09460	0.53	-2.0
1,997,623	-		IAI47_09460	0.53	+0.6
1,997,623	-		IAI47_09460	0.53	+1.9
1,997,623	-		IAI47_09460	0.53	-0.4
1,997,638	+		IAI47_09460	0.54	-1.4
1,997,639	-		IAI47_09460	0.54	+1.0
1,997,646	+		IAI47_09460	0.54	+0.6
1,997,646	+		IAI47_09460	0.54	-2.0
1,997,646	+		IAI47_09460	0.54	-0.5
1,997,646	+		IAI47_09460	0.54	-0.0
1,997,646	+		IAI47_09460	0.54	+0.2
1,997,646	+		IAI47_09460	0.54	+0.9
1,997,646	+		IAI47_09460	0.54	-0.8
1,997,646	+		IAI47_09460	0.54	-1.1
1,997,646	+		IAI47_09460	0.54	+1.6
1,997,646	+		IAI47_09460	0.54	+0.9
1,997,646	+		IAI47_09460	0.54	+1.2
1,997,646	+		IAI47_09460	0.54	-1.1
1,997,646	+		IAI47_09460	0.54	-2.1
1,997,646	+		IAI47_09460	0.54	+0.5
1,997,646	+		IAI47_09460	0.54	+0.6
1,997,646	+		IAI47_09460	0.54	-1.3
1,997,646	+		IAI47_09460	0.54	+0.8
1,997,646	+		IAI47_09460	0.54	-0.8
1,997,646	+		IAI47_09460	0.54	-1.8
1,997,646	+		IAI47_09460	0.54	-0.7
1,997,646	+		IAI47_09460	0.54	-0.3
1,997,646	+		IAI47_09460	0.54	+1.4
1,997,647	-		IAI47_09460	0.55	-0.1
1,997,647	-		IAI47_09460	0.55	-0.8
1,997,647	-		IAI47_09460	0.55	-0.7
1,997,647	-		IAI47_09460	0.55	+1.8
1,997,647	-		IAI47_09460	0.55	-0.8
1,997,647	-		IAI47_09460	0.55	+0.6
1,997,647	-		IAI47_09460	0.55	-0.9
1,997,647	-		IAI47_09460	0.55	-0.3
1,997,647	-		IAI47_09460	0.55	-0.3
1,997,647	-		IAI47_09460	0.55	+1.5
1,997,647	-		IAI47_09460	0.55	-1.0
1,997,647	-		IAI47_09460	0.55	-0.1
1,997,647	-		IAI47_09460	0.55	+0.2
1,997,647	-		IAI47_09460	0.55	-0.3
1,997,647	-		IAI47_09460	0.55	+0.8
1,997,649	+		IAI47_09460	0.55	-0.2
1,997,649	+		IAI47_09460	0.55	-0.1
1,997,649	+		IAI47_09460	0.55	-0.2
1,997,649	+		IAI47_09460	0.55	-0.6
1,997,649	+		IAI47_09460	0.55	-0.0
1,997,649	+		IAI47_09460	0.55	-1.3
1,997,649	+		IAI47_09460	0.55	-2.4
1,997,649	+		IAI47_09460	0.55	-0.0
1,997,650	-		IAI47_09460	0.55	-0.4
1,997,650	-		IAI47_09460	0.55	-0.5
1,997,650	-		IAI47_09460	0.55	+0.6
1,997,650	-		IAI47_09460	0.55	-0.3
1,997,650	-		IAI47_09460	0.55	-0.3
1,997,652	+		IAI47_09460	0.55	-0.3
1,997,652	+		IAI47_09460	0.55	+0.2
1,997,652	+		IAI47_09460	0.55	-0.1
1,997,653	-		IAI47_09460	0.55	-1.4
1,997,653	-		IAI47_09460	0.55	+0.2
1,997,660	+		IAI47_09460	0.55	+0.8
1,997,718	-		IAI47_09460	0.59	-0.8
1,997,781	-		IAI47_09460	0.63	-0.3
1,997,781	-		IAI47_09460	0.63	-0.4
1,997,804	+		IAI47_09460	0.64	+2.4
1,997,922	+		IAI47_09460	0.71	+0.2
1,997,922	+		IAI47_09460	0.71	-0.6
1,997,923	-		IAI47_09460	0.72	-0.5
1,997,923	-		IAI47_09460	0.72	-0.7
1,997,923	-		IAI47_09460	0.72	+0.5
1,997,923	-		IAI47_09460	0.72	+2.8
1,997,923	-		IAI47_09460	0.72	+0.8
1,997,923	-		IAI47_09460	0.72	-1.0
1,997,923	-		IAI47_09460	0.72	-0.5
1,997,969	+		IAI47_09460	0.74	+0.2
1,997,969	+		IAI47_09460	0.74	-0.3
1,997,969	+		IAI47_09460	0.74	-0.1
1,997,970	-		IAI47_09460	0.74	+0.7
1,998,027	+		IAI47_09460	0.78	-0.8
1,998,028	-		IAI47_09460	0.78	-0.5
1,998,041	+		IAI47_09460	0.79	-1.1
1,998,041	+		IAI47_09460	0.79	+0.6
1,998,087	+		IAI47_09460	0.82	+0.1
1,998,087	+		IAI47_09460	0.82	-0.7
1,998,087	+		IAI47_09460	0.82	-1.9
1,998,088	-		IAI47_09460	0.82	-0.1
1,998,088	-		IAI47_09460	0.82	+0.0
1,998,140	+		IAI47_09460	0.85	-0.1
1,998,141	-		IAI47_09460	0.85	-1.2
1,998,153	-		IAI47_09460	0.86	-0.9
1,998,165	+		IAI47_09460	0.86	+0.5
1,998,165	+		IAI47_09460	0.86	+0.8
1,998,165	+		IAI47_09460	0.86	-0.1
1,998,165	+		IAI47_09460	0.86	-0.5
1,998,182	+		IAI47_09460	0.88	-1.5
1,998,215	+		IAI47_09460	0.90	-2.6
1,998,216	-		IAI47_09460	0.90	-1.4
1,998,216	-		IAI47_09460	0.90	+0.8
1,998,216	-		IAI47_09460	0.90	-0.2
1,998,225	+				-0.8
1,998,225	+				+0.9
1,998,225	+				-0.5
1,998,226	-				-1.0
1,998,276	+				-2.1
1,998,276	+				+1.5
1,998,276	+				+0.2
1,998,276	+				+0.6
1,998,276	+				-0.5
1,998,276	+				+1.8
1,998,277	-				+0.8
1,998,277	-				-0.1
1,998,277	-				-1.8
1,998,277	-				-0.7
1,998,282	+				-1.4
1,998,282	+				-0.2
1,998,283	-				+0.1
1,998,321	+				+0.5
1,998,322	-				-0.0
1,998,351	+				+0.0
1,998,351	+				-2.0
1,998,351	+				-0.4
1,998,381	+				-0.0
1,998,381	+				-0.1
1,998,381	+				+0.4
1,998,463	+				+0.1
1,998,464	-				+0.2
1,998,470	+				-0.1
1,998,475	+				+1.0
1,998,476	-				+0.6
1,998,481	+				-1.0
1,998,482	-				+0.5
1,998,484	+				-1.0
1,998,485	-				-0.4
1,998,485	-				-2.3
1,998,485	-				+1.0
1,998,485	-				+0.9
1,998,527	+				+0.5
1,998,527	+				+1.8
1,998,528	-				+1.0
1,998,528	-				+0.9
1,998,640	+		IAI47_09465	0.14	-0.1
1,998,640	+		IAI47_09465	0.14	-1.5
1,998,640	+		IAI47_09465	0.14	+0.1
1,998,640	+		IAI47_09465	0.14	-0.2
1,998,640	+		IAI47_09465	0.14	+0.2
1,998,641	-		IAI47_09465	0.14	+0.0
1,998,641	-		IAI47_09465	0.14	+0.9
1,998,641	-		IAI47_09465	0.14	-0.3
1,998,641	-		IAI47_09465	0.14	-0.3
1,998,641	-		IAI47_09465	0.14	+0.2
1,998,641	-		IAI47_09465	0.14	+0.3
1,998,642	+		IAI47_09465	0.14	+0.6
1,998,642	+		IAI47_09465	0.14	+1.6
1,998,710	+		IAI47_09465	0.21	+1.1
1,998,760	-		IAI47_09465	0.26	-0.5
1,998,840	+		IAI47_09465	0.34	+0.6
1,998,841	-		IAI47_09465	0.34	-0.2
1,998,841	-		IAI47_09465	0.34	-0.2
1,998,841	-		IAI47_09465	0.34	+1.4
1,998,867	+		IAI47_09465	0.37	+0.9
1,998,867	+		IAI47_09465	0.37	-0.2
1,998,995	+		IAI47_09465	0.50	+0.8
1,998,995	+		IAI47_09465	0.50	-0.9
1,998,995	+		IAI47_09465	0.50	+1.8
1,998,995	+		IAI47_09465	0.50	-1.4
1,998,995	+		IAI47_09465	0.50	-0.3
1,998,996	-		IAI47_09465	0.50	-0.2
1,998,996	-		IAI47_09465	0.50	-0.0
1,998,996	-		IAI47_09465	0.50	+0.6
1,999,099	+		IAI47_09465	0.61	+0.2
1,999,099	+		IAI47_09465	0.61	-0.8
1,999,100	-		IAI47_09465	0.61	+1.0
1,999,100	-		IAI47_09465	0.61	+1.4
1,999,100	-		IAI47_09465	0.61	+0.6
1,999,100	-		IAI47_09465	0.61	-2.8
1,999,123	+		IAI47_09465	0.63	+0.2
1,999,123	+		IAI47_09465	0.63	-0.3
1,999,123	+		IAI47_09465	0.63	-0.3
1,999,124	-		IAI47_09465	0.63	+1.2
1,999,124	-		IAI47_09465	0.63	-0.5
1,999,124	-		IAI47_09465	0.63	-0.4
1,999,124	-		IAI47_09465	0.63	-0.2
1,999,303	+		IAI47_09465	0.81	+0.2
1,999,303	+		IAI47_09465	0.81	+0.6
1,999,303	+		IAI47_09465	0.81	-1.4
1,999,303	+		IAI47_09465	0.81	-0.6
1,999,303	+		IAI47_09465	0.81	-0.0
1,999,303	+		IAI47_09465	0.81	+0.7
1,999,303	+		IAI47_09465	0.81	+0.2
1,999,303	+		IAI47_09465	0.81	-0.0
1,999,303	+		IAI47_09465	0.81	-0.4
1,999,303	+		IAI47_09465	0.81	-0.4
1,999,303	+		IAI47_09465	0.81	-0.7
1,999,303	+		IAI47_09465	0.81	+0.5
1,999,303	+		IAI47_09465	0.81	-0.1
1,999,303	+		IAI47_09465	0.81	-0.0
1,999,304	-		IAI47_09465	0.82	+0.0
1,999,304	-		IAI47_09465	0.82	+0.5
1,999,304	-		IAI47_09465	0.82	-0.8
1,999,304	-		IAI47_09465	0.82	-0.5
1,999,304	-		IAI47_09465	0.82	+1.2
1,999,304	-		IAI47_09465	0.82	-1.1
1,999,304	-		IAI47_09465	0.82	+0.0
1,999,304	-		IAI47_09465	0.82	+0.6
1,999,304	-		IAI47_09465	0.82	-0.4
1,999,304	-		IAI47_09465	0.82	+0.1
1,999,304	-		IAI47_09465	0.82	-0.1
1,999,305	+		IAI47_09465	0.82	-0.2
1,999,305	+		IAI47_09465	0.82	-1.4
1,999,305	+		IAI47_09465	0.82	-1.4
1,999,305	+		IAI47_09465	0.82	+0.5
1,999,305	+		IAI47_09465	0.82	+0.2
1,999,305	+		IAI47_09465	0.82	+0.2
1,999,305	+		IAI47_09465	0.82	+0.8
1,999,306	-		IAI47_09465	0.82	+0.2
1,999,306	-		IAI47_09465	0.82	-0.7
1,999,306	-		IAI47_09465	0.82	+0.6
1,999,306	-		IAI47_09465	0.82	+0.4
1,999,306	-		IAI47_09465	0.82	+0.1
1,999,306	-		IAI47_09465	0.82	-0.4
1,999,308	+		IAI47_09465	0.82	+0.3
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.1
1,999,308	+		IAI47_09465	0.82	+1.0
1,999,308	+		IAI47_09465	0.82	-0.0
1,999,308	+		IAI47_09465	0.82	-0.0
1,999,308	+		IAI47_09465	0.82	+0.0
1,999,308	+		IAI47_09465	0.82	-0.6
1,999,308	+		IAI47_09465	0.82	-0.3
1,999,308	+		IAI47_09465	0.82	-0.1
1,999,308	+		IAI47_09465	0.82	-0.2
1,999,308	+		IAI47_09465	0.82	-0.5
1,999,308	+		IAI47_09465	0.82	-1.3
1,999,308	+		IAI47_09465	0.82	+1.2
1,999,308	+		IAI47_09465	0.82	-0.4
1,999,309	-		IAI47_09465	0.82	+0.2
1,999,309	-		IAI47_09465	0.82	+0.5
1,999,309	-		IAI47_09465	0.82	+0.7
1,999,309	-		IAI47_09465	0.82	+0.3
1,999,309	-		IAI47_09465	0.82	-0.2
1,999,309	-		IAI47_09465	0.82	-0.3
1,999,309	-		IAI47_09465	0.82	+0.8
1,999,309	-		IAI47_09465	0.82	-1.0
1,999,309	-		IAI47_09465	0.82	+0.9
1,999,309	-		IAI47_09465	0.82	+1.6
1,999,309	-		IAI47_09465	0.82	-0.1
1,999,368	+		IAI47_09465	0.88	-0.2
1,999,369	-		IAI47_09465	0.88	+1.8