Strain Fitness in Pantoea sp. MT58 around IAI47_08935

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,888,732	-				-0.4
1,888,732	-				-1.4
1,888,732	-				-0.7
1,888,746	-				-0.5
1,888,746	-				+0.2
1,888,746	-				+0.4
1,888,767	+				-0.5
1,888,790	+				+1.1
1,888,790	+				-0.6
1,888,790	+				+0.6
1,888,790	+				+1.2
1,888,791	-				+0.2
1,888,791	-				+1.2
1,888,796	-				-0.4
1,888,809	-				-2.1
1,888,810	+				-1.1
1,888,810	+				+1.0
1,888,810	+				+0.2
1,888,810	+				+0.1
1,888,810	+				+0.2
1,888,810	+				-0.4
1,888,810	+				+0.3
1,888,811	-				+0.8
1,888,811	-				+0.2
1,888,811	-				+1.0
1,888,811	-				-3.5
1,888,815	+				-0.2
1,888,857	+				+0.2
1,888,859	+				+0.3
1,888,859	+				-0.3
1,888,860	-				-0.5
1,888,860	-				-0.4
1,888,863	+				-0.8
1,888,864	-				-0.6
1,888,925	+				+0.3
1,888,926	-				-0.8
1,888,926	-				+2.5
1,888,929	+				-0.4
1,888,930	-				+0.8
1,888,982	+		IAI47_08930	0.14	+0.2
1,888,982	+		IAI47_08930	0.14	+0.6
1,888,983	-		IAI47_08930	0.14	-0.4
1,888,983	-		IAI47_08930	0.14	+0.2
1,888,983	-		IAI47_08930	0.14	-0.3
1,889,018	+		IAI47_08930	0.18	+0.9
1,889,018	+		IAI47_08930	0.18	-0.2
1,889,018	+		IAI47_08930	0.18	+1.5
1,889,042	+		IAI47_08930	0.22	-0.1
1,889,042	+		IAI47_08930	0.22	-0.8
1,889,042	+		IAI47_08930	0.22	+0.1
1,889,043	-		IAI47_08930	0.22	-0.8
1,889,043	-		IAI47_08930	0.22	-1.1
1,889,043	-		IAI47_08930	0.22	-0.0
1,889,043	-		IAI47_08930	0.22	-0.5
1,889,043	-		IAI47_08930	0.22	-0.8
1,889,043	-		IAI47_08930	0.22	-0.7
1,889,043	-		IAI47_08930	0.22	-1.6
1,889,043	-		IAI47_08930	0.22	+0.7
1,889,084	+		IAI47_08930	0.27	+0.8
1,889,085	-		IAI47_08930	0.27	+2.5
1,889,085	-		IAI47_08930	0.27	-1.8
1,889,085	-		IAI47_08930	0.27	-0.0
1,889,085	-		IAI47_08930	0.27	+1.2
1,889,087	+		IAI47_08930	0.28	-2.1
1,889,087	+		IAI47_08930	0.28	-0.8
1,889,087	+		IAI47_08930	0.28	+0.6
1,889,087	+		IAI47_08930	0.28	-0.8
1,889,088	-		IAI47_08930	0.28	+0.4
1,889,088	-		IAI47_08930	0.28	-0.7
1,889,088	-		IAI47_08930	0.28	+0.5
1,889,088	-		IAI47_08930	0.28	+0.7
1,889,088	-		IAI47_08930	0.28	-2.1
1,889,147	+		IAI47_08930	0.36	-0.1
1,889,200	+		IAI47_08930	0.43	-1.1
1,889,225	+		IAI47_08930	0.46	-0.9
1,889,226	-		IAI47_08930	0.46	-0.0
1,889,226	-		IAI47_08930	0.46	+1.0
1,889,226	-		IAI47_08930	0.46	+0.6
1,889,257	+		IAI47_08930	0.50	+0.4
1,889,257	+		IAI47_08930	0.50	+0.7
1,889,257	+		IAI47_08930	0.50	+0.2
1,889,265	+		IAI47_08930	0.51	-0.5
1,889,266	-		IAI47_08930	0.51	-1.0
1,889,266	-		IAI47_08930	0.51	-0.5
1,889,266	-		IAI47_08930	0.51	+1.0
1,889,310	+		IAI47_08930	0.57	+1.2
1,889,310	+		IAI47_08930	0.57	+0.2
1,889,311	-		IAI47_08930	0.57	+1.1
1,889,311	-		IAI47_08930	0.57	-0.0
1,889,311	-		IAI47_08930	0.57	+0.6
1,889,311	-		IAI47_08930	0.57	-2.6
1,889,315	+		IAI47_08930	0.58	+0.2
1,889,315	+		IAI47_08930	0.58	+0.7
1,889,315	+		IAI47_08930	0.58	+0.2
1,889,316	-		IAI47_08930	0.58	+2.0
1,889,316	-		IAI47_08930	0.58	-1.8
1,889,316	-		IAI47_08930	0.58	+0.4
1,889,316	-		IAI47_08930	0.58	+0.6
1,889,316	-		IAI47_08930	0.58	-0.0
1,889,319	+		IAI47_08930	0.59	+0.3
1,889,319	+		IAI47_08930	0.59	-0.2
1,889,319	+		IAI47_08930	0.59	+0.1
1,889,319	+		IAI47_08930	0.59	-0.3
1,889,319	+		IAI47_08930	0.59	+0.6
1,889,319	+		IAI47_08930	0.59	-1.4
1,889,319	+		IAI47_08930	0.59	-0.0
1,889,320	-		IAI47_08930	0.59	+0.4
1,889,320	-		IAI47_08930	0.59	-0.9
1,889,320	-		IAI47_08930	0.59	-0.3
1,889,320	-		IAI47_08930	0.59	+0.8
1,889,320	-		IAI47_08930	0.59	-1.0
1,889,320	-		IAI47_08930	0.59	-1.2
1,889,320	-		IAI47_08930	0.59	+0.4
1,889,320	-		IAI47_08930	0.59	-1.0
1,889,320	-		IAI47_08930	0.59	-0.8
1,889,321	+		IAI47_08930	0.59	+0.3
1,889,350	+		IAI47_08930	0.63	+0.2
1,889,368	+		IAI47_08930	0.65	+0.2
1,889,368	+		IAI47_08930	0.65	+1.2
1,889,368	+		IAI47_08930	0.65	-0.4
1,889,369	-		IAI47_08930	0.65	-1.1
1,889,397	-		IAI47_08930	0.69	-0.9
1,889,399	+		IAI47_08930	0.69	-0.4
1,889,399	+		IAI47_08930	0.69	+0.9
1,889,399	+		IAI47_08930	0.69	-0.6
1,889,399	+		IAI47_08930	0.69	+0.7
1,889,399	+		IAI47_08930	0.69	+1.2
1,889,399	+		IAI47_08930	0.69	-0.6
1,889,400	-		IAI47_08930	0.69	-0.6
1,889,400	-		IAI47_08930	0.69	-0.7
1,889,402	+		IAI47_08930	0.70	+0.7
1,889,402	+		IAI47_08930	0.70	-1.9
1,889,402	+		IAI47_08930	0.70	-0.8
1,889,403	-		IAI47_08930	0.70	-0.8
1,889,403	-		IAI47_08930	0.70	-0.5
1,889,403	-		IAI47_08930	0.70	-0.2
1,889,403	-		IAI47_08930	0.70	+0.2
1,889,409	+		IAI47_08930	0.71	+1.0
1,889,410	-		IAI47_08930	0.71	-1.1
1,889,410	-		IAI47_08930	0.71	+0.4
1,889,448	-		IAI47_08930	0.76	-0.4
1,889,448	-		IAI47_08930	0.76	-0.1
1,889,448	-		IAI47_08930	0.76	+0.2
1,889,449	+		IAI47_08930	0.76	+0.6
1,889,449	+		IAI47_08930	0.76	+0.2
1,889,450	-		IAI47_08930	0.76	+0.7
1,889,474	+		IAI47_08930	0.79	-1.0
1,889,474	+		IAI47_08930	0.79	-0.6
1,889,474	+		IAI47_08930	0.79	-0.5
1,889,475	-		IAI47_08930	0.79	+0.7
1,889,475	-		IAI47_08930	0.79	+0.6
1,889,475	-		IAI47_08930	0.79	+0.1
1,889,475	-		IAI47_08930	0.79	+0.2
1,889,495	+		IAI47_08930	0.82	+0.2
1,889,537	+		IAI47_08930	0.88	+0.4
1,889,538	-		IAI47_08930	0.88	+1.2
1,889,538	-		IAI47_08930	0.88	+1.2
1,889,538	-		IAI47_08930	0.88	+0.8
1,889,582	-				+0.5
1,889,599	-				+0.6
1,889,618	+				+1.2
1,889,618	+				-1.0
1,889,618	+				+0.0
1,889,618	+				+1.2
1,889,619	-				-0.9
1,889,619	-				-0.2
1,889,619	-				-1.5
1,889,619	-				-1.6
1,889,631	-				+1.1
1,889,661	+				-0.8
1,889,661	+				+0.7
1,889,661	+				-1.0
1,889,661	+				+1.0
1,889,661	+				+0.2
1,889,661	+				-0.0
1,889,662	-				+0.7
1,889,662	-				-0.7
1,889,662	-				-1.4
1,889,662	-				+0.0
1,889,662	-				+0.7
1,889,679	+				-0.4
1,889,725	+				+0.5
1,889,725	+				+0.2
1,889,774	+				-0.3
1,889,774	+				+0.5
1,889,774	+				+0.2
1,889,774	+				+0.2
1,889,774	+				-0.1
1,889,775	-				+1.0
1,889,775	-				-1.4
1,889,775	-				-0.7
1,889,940	+		IAI47_08935	0.27	-1.5
1,889,940	+		IAI47_08935	0.27	+0.5
1,889,941	-		IAI47_08935	0.27	-0.2
1,889,951	+		IAI47_08935	0.28	-0.1
1,889,951	+		IAI47_08935	0.28	+0.6
1,889,980	+		IAI47_08935	0.32	-1.6
1,889,980	+		IAI47_08935	0.32	+0.0
1,889,980	+		IAI47_08935	0.32	+0.1
1,889,980	+		IAI47_08935	0.32	+0.2
1,889,981	-		IAI47_08935	0.32	+0.5
1,889,981	-		IAI47_08935	0.32	+0.4
1,889,981	-		IAI47_08935	0.32	-1.4
1,889,981	-		IAI47_08935	0.32	+1.7
1,890,023	+		IAI47_08935	0.37	-0.6
1,890,023	+		IAI47_08935	0.37	-0.5
1,890,035	+		IAI47_08935	0.38	+0.8
1,890,035	+		IAI47_08935	0.38	+0.6
1,890,036	-		IAI47_08935	0.38	+0.4
1,890,036	-		IAI47_08935	0.38	+1.8
1,890,036	-		IAI47_08935	0.38	+0.0
1,890,036	-		IAI47_08935	0.38	+0.2
1,890,056	-		IAI47_08935	0.40	+0.7
1,890,151	+		IAI47_08935	0.52	-1.5
1,890,152	-		IAI47_08935	0.52	-0.1
1,890,190	+		IAI47_08935	0.56	-0.9
1,890,209	+		IAI47_08935	0.58	-0.1
1,890,209	+		IAI47_08935	0.58	-2.1
1,890,209	+		IAI47_08935	0.58	+0.2
1,890,284	+		IAI47_08935	0.67	+0.2
1,890,284	+		IAI47_08935	0.67	+1.0
1,890,284	+		IAI47_08935	0.67	+0.6
1,890,284	+		IAI47_08935	0.67	-1.2
1,890,284	+		IAI47_08935	0.67	-0.1
1,890,285	-		IAI47_08935	0.67	-0.0
1,890,285	-		IAI47_08935	0.67	-0.7
1,890,328	+		IAI47_08935	0.72	+0.7
1,890,538	+				-0.4
1,890,538	+				-0.2
1,890,538	+				-0.8
1,890,538	+				-0.1
1,890,538	+				+0.1
1,890,538	+				+0.8
1,890,538	+				-0.8
1,890,538	+				-0.2
1,890,539	-				+0.6
1,890,539	-				-1.2
1,890,539	-				-1.0
1,890,539	-				-0.8
1,890,539	-				-0.0
1,890,539	-				-0.6
1,890,539	-				-0.3
1,890,539	-				-0.2
1,890,539	-				+0.2
1,890,539	-				+1.5
1,890,539	-				-0.1
1,890,654	+		IAI47_08940	0.11	-0.6
1,890,655	-		IAI47_08940	0.11	-0.3
1,890,690	+		IAI47_08940	0.15	-0.6
1,890,690	+		IAI47_08940	0.15	-0.1
1,890,690	+		IAI47_08940	0.15	+0.5
1,890,691	-		IAI47_08940	0.15	-0.8
1,890,691	-		IAI47_08940	0.15	-0.4
1,890,691	-		IAI47_08940	0.15	+0.4
1,890,691	-		IAI47_08940	0.15	-0.4
1,890,691	-		IAI47_08940	0.15	+0.5
1,890,691	-		IAI47_08940	0.15	-0.2
1,890,692	+		IAI47_08940	0.15	-0.2
1,890,776	+		IAI47_08940	0.24	+0.5
1,890,804	+		IAI47_08940	0.27	+1.6
1,890,805	-		IAI47_08940	0.27	-1.4
1,890,805	-		IAI47_08940	0.27	+0.2
1,890,805	-		IAI47_08940	0.27	-1.1
1,890,843	+		IAI47_08940	0.32	-1.8
1,890,843	+		IAI47_08940	0.32	-1.6
1,890,844	-		IAI47_08940	0.32	-0.2
1,890,844	-		IAI47_08940	0.32	+0.2
1,890,915	+		IAI47_08940	0.40	-0.2
1,890,915	+		IAI47_08940	0.40	-0.2
1,890,921	+		IAI47_08940	0.40	-0.0
1,890,921	+		IAI47_08940	0.40	-0.3
1,890,922	-		IAI47_08940	0.40	-1.0
1,890,922	-		IAI47_08940	0.40	-0.3
1,890,971	+		IAI47_08940	0.46	-0.1
1,890,971	+		IAI47_08940	0.46	+0.2
1,890,971	+		IAI47_08940	0.46	-0.1
1,890,971	+		IAI47_08940	0.46	-0.2
1,890,971	+		IAI47_08940	0.46	-0.2
1,890,972	-		IAI47_08940	0.46	+1.1
1,890,972	-		IAI47_08940	0.46	-0.2
1,890,972	-		IAI47_08940	0.46	-0.1
1,890,972	-		IAI47_08940	0.46	+0.2
1,891,007	+		IAI47_08940	0.50	-0.2
1,891,007	+		IAI47_08940	0.50	+1.0
1,891,008	-		IAI47_08940	0.50	-0.3
1,891,063	-		IAI47_08940	0.56	-0.8
1,891,356	+		IAI47_08940	0.89	+1.2
1,891,357	-		IAI47_08940	0.89	-0.1
1,891,390	+				-0.2
1,891,390	+				+1.2
1,891,391	-				+0.2
1,891,409	+				+0.4
1,891,410	-				-0.3
1,891,425	+				+0.6
1,891,426	-				+1.8
1,891,440	+				+0.5
1,891,441	-				+1.9
1,891,441	-				+0.5
1,891,449	+				+0.8
1,891,449	+				+0.8
1,891,449	+				-0.6
1,891,449	+				-0.0
1,891,449	+				+0.0
1,891,449	+				-1.5
1,891,449	+				-1.2
1,891,449	+				-1.0
1,891,449	+				-0.0
1,891,450	-				+1.4
1,891,450	-				+0.5
1,891,450	-				+0.1
1,891,450	-				-0.7
1,891,450	-				-1.4
1,891,508	+				-1.1
1,891,533	+				-2.6
1,891,534	-				+0.6
1,891,534	-				-0.0
1,891,534	-				-0.6
1,891,534	-				-0.8
1,891,534	-				-1.0
1,891,534	-				-0.4
1,891,534	-				-0.6
1,891,534	-				-0.6