Strain Fitness in Pantoea sp. MT58 around IAI47_08870

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,872,016	+				-0.1
1,872,017	-				+0.1
1,872,019	+				+1.2
1,872,019	+				+0.6
1,872,019	+				-1.5
1,872,020	-				+0.6
1,872,020	-				-0.1
1,872,055	+				-1.0
1,872,055	+				+1.2
1,872,107	+				-1.4
1,872,113	+				+1.7
1,872,114	-				-0.5
1,872,172	+				+1.1
1,872,183	+				-0.8
1,872,183	+				+2.3
1,872,184	-				-0.3
1,872,186	+				+1.5
1,872,186	+				-0.4
1,872,186	+				-0.4
1,872,186	+				+0.2
1,872,186	+				-0.3
1,872,187	-				-2.0
1,872,261	+				+0.0
1,872,285	+				-0.0
1,872,285	+				-0.1
1,872,285	+				-0.2
1,872,285	+				-0.4
1,872,285	+				+1.3
1,872,286	-				+1.1
1,872,286	-				+0.2
1,872,286	-				-0.2
1,872,286	-				-1.8
1,872,286	-				+0.4
1,872,296	+				-1.1
1,872,297	-				-0.0
1,872,297	-				+1.0
1,872,316	+				-1.3
1,872,317	-				-1.4
1,872,332	+				+0.7
1,872,353	+		IAI47_08865	0.11	-0.4
1,872,353	+		IAI47_08865	0.11	+0.9
1,872,353	+		IAI47_08865	0.11	+0.5
1,872,354	-		IAI47_08865	0.11	+0.8
1,872,357	+		IAI47_08865	0.11	+1.4
1,872,357	+		IAI47_08865	0.11	+0.8
1,872,371	+		IAI47_08865	0.13	+0.2
1,872,414	-		IAI47_08865	0.20	+0.1
1,872,442	+		IAI47_08865	0.24	-0.2
1,872,459	-		IAI47_08865	0.27	+0.8
1,872,459	-		IAI47_08865	0.27	-0.3
1,872,459	-		IAI47_08865	0.27	-0.1
1,872,551	+		IAI47_08865	0.41	-0.4
1,872,773	+		IAI47_08865	0.74	-0.2
1,872,773	+		IAI47_08865	0.74	-0.2
1,872,773	+		IAI47_08865	0.74	+1.2
1,872,773	+		IAI47_08865	0.74	-0.9
1,872,774	-		IAI47_08865	0.75	+3.0
1,872,774	-		IAI47_08865	0.75	+0.8
1,872,782	+		IAI47_08865	0.76	+0.9
1,872,782	+		IAI47_08865	0.76	-0.1
1,872,783	-		IAI47_08865	0.76	+1.3
1,872,816	+		IAI47_08865	0.81	-0.1
1,872,816	+		IAI47_08865	0.81	-0.1
1,872,816	+		IAI47_08865	0.81	+0.6
1,872,816	+		IAI47_08865	0.81	-0.1
1,872,821	+		IAI47_08865	0.82	-0.2
1,872,822	-		IAI47_08865	0.82	+0.2
1,872,822	-		IAI47_08865	0.82	-0.0
1,872,940	-				+1.9
1,872,962	+				-0.3
1,872,963	-				+1.2
1,872,963	-				-0.3
1,872,963	-				+1.8
1,872,969	+				+0.2
1,872,969	+				-1.8
1,872,969	+				-0.3
1,872,970	-				+0.2
1,872,970	-				-0.0
1,872,970	-				-0.8
1,872,970	-				+1.1
1,872,970	-				+1.6
1,872,970	-				-0.0
1,872,970	-				+1.8
1,872,970	-				+0.4
1,872,971	+				-0.3
1,872,971	+				+1.3
1,872,971	+				+0.1
1,872,971	+				+0.5
1,872,971	+				+0.1
1,872,972	-				+1.5
1,872,972	-				+0.5
1,872,972	-				+1.1
1,872,983	+				-1.4
1,872,983	+				-0.1
1,872,984	-				-1.4
1,873,110	+		IAI47_08870	0.23	-0.3
1,873,110	+		IAI47_08870	0.23	+0.2
1,873,136	+		IAI47_08870	0.29	-0.8
1,873,136	+		IAI47_08870	0.29	+1.2
1,873,136	+		IAI47_08870	0.29	-1.4
1,873,137	-		IAI47_08870	0.29	-0.1
1,873,137	-		IAI47_08870	0.29	+0.5
1,873,156	+		IAI47_08870	0.33	+0.9
1,873,157	-		IAI47_08870	0.34	+2.1
1,873,168	+		IAI47_08870	0.36	+1.9
1,873,168	+		IAI47_08870	0.36	+0.4
1,873,171	+		IAI47_08870	0.37	+0.4
1,873,193	+		IAI47_08870	0.42	-1.4
1,873,193	+		IAI47_08870	0.42	-0.5
1,873,193	+		IAI47_08870	0.42	-1.0
1,873,193	+		IAI47_08870	0.42	-0.2
1,873,194	-		IAI47_08870	0.42	+0.0
1,873,194	-		IAI47_08870	0.42	+0.4
1,873,194	-		IAI47_08870	0.42	-1.4
1,873,194	-		IAI47_08870	0.42	+0.2
1,873,258	+		IAI47_08870	0.56	+2.5
1,873,259	-		IAI47_08870	0.56	+0.3
1,873,274	-		IAI47_08870	0.60	-0.4
1,873,274	-		IAI47_08870	0.60	+0.2
1,873,304	-		IAI47_08870	0.66	+2.0
1,873,367	-		IAI47_08870	0.81	-0.8
1,873,374	+		IAI47_08870	0.82	+0.1
1,873,379	+		IAI47_08870	0.83	+0.8
1,873,379	+		IAI47_08870	0.83	+0.8
1,873,379	+		IAI47_08870	0.83	-0.4
1,873,379	+		IAI47_08870	0.83	+2.2
1,873,379	+		IAI47_08870	0.83	+0.1
1,873,379	+		IAI47_08870	0.83	-0.5
1,873,379	+		IAI47_08870	0.83	-1.8
1,873,379	+		IAI47_08870	0.83	+0.4
1,873,379	+		IAI47_08870	0.83	+0.6
1,873,379	+		IAI47_08870	0.83	+1.6
1,873,380	-		IAI47_08870	0.83	-0.5
1,873,380	-		IAI47_08870	0.83	+1.2
1,873,380	-		IAI47_08870	0.83	+0.9
1,873,380	-		IAI47_08870	0.83	+0.2
1,873,381	+		IAI47_08870	0.84	-1.8
1,873,381	+		IAI47_08870	0.84	+1.0
1,873,381	+		IAI47_08870	0.84	-0.6
1,873,381	+		IAI47_08870	0.84	-1.0
1,873,381	+		IAI47_08870	0.84	-0.3
1,873,382	-		IAI47_08870	0.84	+0.2
1,873,382	-		IAI47_08870	0.84	-0.7
1,873,451	+				-0.4
1,873,521	-				-1.5
1,873,521	-				+0.1
1,873,564	-				+0.5
1,873,564	-				-1.4
1,873,564	-				-0.1
1,874,042	+				-0.8
1,874,043	-				+0.8
1,874,043	-				-1.1
1,874,043	-				+0.2
1,874,043	-				-0.6
1,874,043	-				-0.5
1,874,043	-				+0.5
1,874,078	+				-0.0
1,874,079	-				+0.2
1,874,159	+				+0.8
1,874,159	+				-0.5
1,874,160	-				-0.1
1,874,160	-				+0.5
1,874,275	+				+0.1
1,874,275	+				+0.2
1,874,275	+				-0.4
1,874,276	-				+0.8
1,874,276	-				-0.3
1,874,276	-				+0.9
1,874,312	+				+0.2
1,874,312	+				+0.9
1,874,312	+				-1.4
1,874,312	+				-1.8
1,874,312	+				-0.6
1,874,312	+				-0.9
1,874,313	-				+0.7
1,874,313	-				-1.0
1,874,313	-				+2.5
1,874,313	-				+1.3
1,874,313	-				+0.9
1,874,313	-				-0.1
1,874,346	+				+0.9
1,874,347	-				-0.3
1,874,347	-				-1.2
1,874,385	+				-0.3
1,874,385	+				-1.5
1,874,385	+				-1.8
1,874,407	+				+1.2
1,874,408	-				-0.5
1,874,408	-				+0.9
1,874,408	-				-0.5
1,874,408	-				+2.3
1,874,416	-				+0.6
1,874,416	-				-0.8
1,874,416	-				-0.3
1,874,427	-				-0.5
1,874,433	+				-0.3
1,874,433	+				+1.0
1,874,433	+				+0.6
1,874,433	+				+0.7
1,874,434	-				+0.2
1,874,442	+				-1.1
1,874,442	+				+0.7
1,874,442	+				-1.4
1,874,442	+				+0.8
1,874,442	+				-0.7
1,874,442	+				+0.6
1,874,453	+				-1.1
1,874,453	+				-0.5