Strain Fitness in Pantoea sp. MT58 around IAI47_08455

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,788,643	+				-2.6
1,788,662	-				-1.4
1,788,662	-				-2.8
1,788,808	+		IAI47_08450	0.20	+0.2
1,788,981	+		IAI47_08450	0.37	-2.1
1,788,982	-		IAI47_08450	0.37	-0.8
1,788,987	-		IAI47_08450	0.38	-1.8
1,789,073	-		IAI47_08450	0.46	-2.6
1,789,158	-		IAI47_08450	0.55	-1.8
1,789,166	-		IAI47_08450	0.56	-0.8
1,789,180	+		IAI47_08450	0.57	-1.4
1,789,236	+		IAI47_08450	0.62	-2.8
1,789,236	+		IAI47_08450	0.62	-2.4
1,789,369	+		IAI47_08450	0.76	-2.1
1,789,394	+		IAI47_08450	0.78	-1.4
1,789,394	+		IAI47_08450	0.78	-1.1
1,789,394	+		IAI47_08450	0.78	-1.4
1,789,396	+		IAI47_08450	0.78	-2.1
1,789,405	+		IAI47_08450	0.79	-1.8
1,789,594	+				+0.6
1,789,595	-				-1.8
1,789,610	+				-0.8
1,789,611	-				+0.2
1,789,614	+				+1.3
1,789,614	+				-2.6
1,789,614	+				-0.1
1,789,614	+				-0.8
1,789,614	+				-0.2
1,789,614	+				+2.0
1,789,614	+				+1.0
1,789,615	-				+0.2
1,789,615	-				-0.0
1,789,615	-				+0.2
1,789,615	-				+0.8
1,789,615	-				-0.2
1,789,615	-				-0.5
1,789,615	-				+0.9
1,789,615	-				+0.8
1,789,615	-				-0.0
1,789,615	-				+0.4
1,789,615	-				+0.2
1,789,615	-				-1.3
1,789,632	-				+1.2
1,789,645	+				+1.5
1,789,645	+				+0.5
1,789,646	-				-0.0
1,789,646	-				+0.8
1,789,646	-				-0.7
1,789,646	-				-1.1
1,789,646	-				+0.1
1,789,695	+		IAI47_08455	0.10	-1.0
1,789,695	+		IAI47_08455	0.10	+0.6
1,789,695	+		IAI47_08455	0.10	-1.7
1,789,695	+		IAI47_08455	0.10	+0.5
1,789,696	-		IAI47_08455	0.11	+0.9
1,789,696	-		IAI47_08455	0.11	-0.7
1,789,696	-		IAI47_08455	0.11	+0.2
1,789,854	-		IAI47_08455	0.31	+0.3
1,789,907	-		IAI47_08455	0.37	+0.2
1,790,058	+		IAI47_08455	0.57	+1.2
1,790,058	+		IAI47_08455	0.57	+0.4
1,790,058	+		IAI47_08455	0.57	+0.4
1,790,059	-		IAI47_08455	0.57	+0.6
1,790,059	-		IAI47_08455	0.57	+0.5
1,790,059	-		IAI47_08455	0.57	-0.1
1,790,149	+		IAI47_08455	0.68	+0.2
1,790,155	+		IAI47_08455	0.69	+2.5
1,790,226	+		IAI47_08455	0.78	+0.8
1,790,227	-		IAI47_08455	0.78	-0.8
1,790,227	-		IAI47_08455	0.78	-0.4
1,790,227	-		IAI47_08455	0.78	+0.5
1,790,229	+		IAI47_08455	0.78	-2.1
1,790,229	+		IAI47_08455	0.78	-1.0
1,790,229	+		IAI47_08455	0.78	-2.1
1,790,229	+		IAI47_08455	0.78	+0.2
1,790,230	-		IAI47_08455	0.78	+0.0
1,790,230	-		IAI47_08455	0.78	+0.2
1,790,244	-		IAI47_08455	0.80	-0.7
1,790,244	-		IAI47_08455	0.80	-0.0
1,790,302	-		IAI47_08455	0.88	-0.1
1,790,302	-		IAI47_08455	0.88	-0.4
1,790,355	-				-0.3
1,790,369	+				+1.8
1,790,382	-				-0.4
1,790,384	+				-0.1
1,790,385	-				+1.3
1,790,385	-				+0.3
1,790,385	-				+1.2
1,790,427	+				-1.8
1,790,427	+				-0.4
1,790,427	+				-0.2
1,790,428	-				-0.6
1,790,454	+				-0.3
1,790,454	+				-0.6
1,790,568	+		IAI47_08460	0.23	+0.2
1,790,569	-		IAI47_08460	0.23	+0.5
1,790,661	+		IAI47_08460	0.35	-1.2
1,790,662	-		IAI47_08460	0.35	+3.4
1,790,662	-		IAI47_08460	0.35	+0.2
1,790,662	-		IAI47_08460	0.35	+1.4
1,790,662	-		IAI47_08460	0.35	+0.4
1,790,664	+		IAI47_08460	0.36	-0.3
1,790,664	+		IAI47_08460	0.36	+1.1
1,790,664	+		IAI47_08460	0.36	+1.8
1,790,665	-		IAI47_08460	0.36	-1.0
1,790,665	-		IAI47_08460	0.36	-0.0
1,790,665	-		IAI47_08460	0.36	-0.2
1,790,665	-		IAI47_08460	0.36	-0.1
1,790,665	-		IAI47_08460	0.36	+0.2
1,790,665	-		IAI47_08460	0.36	-0.5
1,790,672	+		IAI47_08460	0.37	-0.8
1,790,672	+		IAI47_08460	0.37	-0.2
1,790,672	+		IAI47_08460	0.37	+0.0
1,790,672	+		IAI47_08460	0.37	+2.0
1,790,672	+		IAI47_08460	0.37	-0.3
1,790,673	-		IAI47_08460	0.37	-1.1
1,790,673	-		IAI47_08460	0.37	+0.7
1,790,863	-		IAI47_08460	0.62	+0.2
1,790,863	-		IAI47_08460	0.62	+1.4
1,790,883	+		IAI47_08460	0.65	-0.3
1,790,884	-		IAI47_08460	0.65	-0.3
1,790,893	+		IAI47_08460	0.66	+0.8
1,790,893	+		IAI47_08460	0.66	+0.2
1,790,893	+		IAI47_08460	0.66	-0.1
1,790,893	+		IAI47_08460	0.66	+1.0
1,790,894	-		IAI47_08460	0.66	+2.2
1,790,894	-		IAI47_08460	0.66	-0.1
1,790,894	-		IAI47_08460	0.66	-0.3
1,790,910	+		IAI47_08460	0.68	+0.8
1,790,911	-		IAI47_08460	0.68	-0.3
1,790,911	-		IAI47_08460	0.68	+1.1
1,790,939	+		IAI47_08460	0.72	+0.8
1,790,939	+		IAI47_08460	0.72	+1.8
1,790,939	+		IAI47_08460	0.72	+0.2
1,790,939	+		IAI47_08460	0.72	+0.4
1,790,940	-		IAI47_08460	0.72	-0.3
1,790,940	-		IAI47_08460	0.72	-0.2
1,790,946	+		IAI47_08460	0.73	-1.4
1,790,947	-		IAI47_08460	0.73	+0.7
1,791,109	-				-2.0
1,791,150	+				-1.2
1,791,151	-				+0.2
1,791,151	-				+0.2
1,791,151	-				+0.5
1,791,153	+				-0.4
1,791,154	-				-0.5
1,791,154	-				+1.0
1,791,154	-				-0.9
1,791,154	-				+1.3
1,791,154	-				-0.8
1,791,157	+				-0.8
1,791,157	+				-0.1
1,791,158	-				-0.1
1,791,184	-				+0.4
1,791,185	+				+2.1
1,791,185	+				+0.4
1,791,186	-				+0.7
1,791,227	+				-0.3
1,791,227	+				+0.2
1,791,227	+				+0.7
1,791,228	-				+0.5
1,791,228	-				+1.2
1,791,228	-				+0.2
1,791,228	-				+0.3
1,791,232	+				-0.1
1,791,232	+				-0.2
1,791,232	+				-0.2
1,791,232	+				-0.4
1,791,233	-				-0.2
1,791,239	+				-0.1
1,791,240	-				-0.2
1,791,271	+				-0.5
1,791,271	+				-0.6
1,791,271	+				+1.2
1,791,272	-				+0.5
1,791,286	+				+2.8
1,791,286	+				+0.0
1,791,286	+				+0.8
1,791,341	+		IAI47_08465	0.12	+1.0
1,791,341	+		IAI47_08465	0.12	-0.8
1,791,342	-		IAI47_08465	0.12	-0.8