Strain Fitness in Pantoea sp. MT58 around IAI47_08290

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,752,923	+		IAI47_08280	0.20	+1.2
1,752,923	+		IAI47_08280	0.20	+3.3
1,752,923	+		IAI47_08280	0.20	+1.8
1,752,923	+		IAI47_08280	0.20	+2.6
1,752,923	+		IAI47_08280	0.20	+1.6
1,752,928	-		IAI47_08280	0.21	+3.2
1,752,936	+		IAI47_08280	0.23	+2.8
1,752,989	+		IAI47_08280	0.38	+1.7
1,752,989	+		IAI47_08280	0.38	+3.6
1,752,989	+		IAI47_08280	0.38	+2.5
1,752,989	+		IAI47_08280	0.38	+2.6
1,752,989	+		IAI47_08280	0.38	+2.3
1,752,990	-		IAI47_08280	0.39	+2.0
1,752,998	+		IAI47_08280	0.41	+2.6
1,752,998	+		IAI47_08280	0.41	+1.6
1,752,998	+		IAI47_08280	0.41	+3.1
1,752,998	+		IAI47_08280	0.41	+2.9
1,752,999	-		IAI47_08280	0.41	+2.4
1,753,017	-		IAI47_08280	0.46	+1.4
1,753,059	+		IAI47_08280	0.58	+2.3
1,753,077	+		IAI47_08280	0.63	+1.2
1,753,077	+		IAI47_08280	0.63	+2.3
1,753,077	+		IAI47_08280	0.63	+1.8
1,753,078	-		IAI47_08280	0.64	+1.8
1,753,078	-		IAI47_08280	0.64	+2.0
1,753,078	-		IAI47_08280	0.64	+2.5
1,753,112	+		IAI47_08280	0.73	+2.5
1,753,112	+		IAI47_08280	0.73	+1.6
1,753,112	+		IAI47_08280	0.73	+4.9
1,753,112	+		IAI47_08280	0.73	+2.5
1,753,125	+		IAI47_08280	0.77	+1.1
1,753,140	-		IAI47_08280	0.81	+2.2
1,753,158	+		IAI47_08280	0.86	-0.6
1,753,158	+		IAI47_08280	0.86	-0.3
1,753,158	+		IAI47_08280	0.86	+1.9
1,753,159	-		IAI47_08280	0.86	+1.4
1,753,167	+		IAI47_08280	0.89	+1.5
1,753,167	+		IAI47_08280	0.89	+2.4
1,753,217	+				+1.7
1,753,238	+				+1.9
1,753,279	+		IAI47_08285	0.13	+1.8
1,753,280	-		IAI47_08285	0.13	+2.4
1,753,280	-		IAI47_08285	0.13	+1.3
1,753,288	+		IAI47_08285	0.15	+1.8
1,753,288	+		IAI47_08285	0.15	+2.3
1,753,288	+		IAI47_08285	0.15	+2.0
1,753,288	+		IAI47_08285	0.15	+1.2
1,753,289	-		IAI47_08285	0.15	+2.2
1,753,333	-		IAI47_08285	0.22	+1.9
1,753,335	-		IAI47_08285	0.23	+3.0
1,753,335	-		IAI47_08285	0.23	+2.2
1,753,335	-		IAI47_08285	0.23	+4.5
1,753,342	+		IAI47_08285	0.24	+2.6
1,753,342	+		IAI47_08285	0.24	+2.4
1,753,343	-		IAI47_08285	0.24	+2.1
1,753,433	+		IAI47_08285	0.40	+4.1
1,753,433	+		IAI47_08285	0.40	+2.9
1,753,433	+		IAI47_08285	0.40	+2.9
1,753,434	-		IAI47_08285	0.40	+2.7
1,753,434	-		IAI47_08285	0.40	+2.7
1,753,477	+		IAI47_08285	0.47	+2.1
1,753,477	+		IAI47_08285	0.47	+2.7
1,753,477	+		IAI47_08285	0.47	+2.2
1,753,478	-		IAI47_08285	0.47	+2.0
1,753,478	-		IAI47_08285	0.47	+2.0
1,753,478	-		IAI47_08285	0.47	+2.1
1,753,478	-		IAI47_08285	0.47	+2.1
1,753,490	+		IAI47_08285	0.50	+2.6
1,753,491	-		IAI47_08285	0.50	+1.6
1,753,491	-		IAI47_08285	0.50	+2.2
1,753,506	+		IAI47_08285	0.52	+3.2
1,753,592	+		IAI47_08285	0.67	+1.4
1,753,593	-		IAI47_08285	0.67	+2.1
1,753,613	+		IAI47_08285	0.71	+2.4
1,753,613	+		IAI47_08285	0.71	+1.9
1,753,613	+		IAI47_08285	0.71	+2.6
1,753,613	+		IAI47_08285	0.71	+3.8
1,753,614	-		IAI47_08285	0.71	+3.2
1,753,614	-		IAI47_08285	0.71	+2.4
1,753,634	+		IAI47_08285	0.74	+3.1
1,753,635	-		IAI47_08285	0.75	+2.3
1,753,635	-		IAI47_08285	0.75	+2.9
1,753,635	-		IAI47_08285	0.75	+1.5
1,753,637	+		IAI47_08285	0.75	+2.5
1,753,637	+		IAI47_08285	0.75	+2.6
1,753,637	+		IAI47_08285	0.75	+2.5
1,753,638	-		IAI47_08285	0.75	+2.8
1,753,638	-		IAI47_08285	0.75	+2.5
1,753,638	-		IAI47_08285	0.75	+1.7
1,753,667	+		IAI47_08285	0.80	+2.5
1,753,667	+		IAI47_08285	0.80	+5.2
1,753,713	-		IAI47_08285	0.88	-1.8
1,753,736	+				-1.4
1,753,736	+				-0.8
1,753,736	+				+1.2
1,753,737	-				+1.0
1,753,737	-				-0.0
1,753,766	+				+1.5
1,753,766	+				-1.2
1,753,766	+				+1.2
1,753,817	+				+1.2
1,753,817	+				-0.2
1,753,854	+				+0.9
1,753,854	+				+0.6
1,753,855	-				+1.6
1,753,855	-				+1.1
1,753,876	+				+1.2
1,753,877	-				+0.4
1,753,902	+				+0.4
1,753,902	+				+2.0
1,753,921	+				+1.8
1,753,921	+				+1.4
1,753,921	+				+1.7
1,753,921	+				+1.3
1,753,925	+				+1.3
1,753,925	+				+1.5
1,753,926	-				+0.7
1,753,926	-				+0.6
1,753,927	+				+1.2
1,753,927	+				+1.1
1,753,927	+				+0.8
1,753,928	-				+1.7
1,753,928	-				+2.0
1,753,928	-				+1.4
1,753,928	-				+1.5
1,753,933	-				+1.4
1,753,965	+				+4.1
1,753,965	+				+0.9
1,753,975	+				+0.8
1,753,975	+				-0.3
1,753,975	+				+1.5
1,753,975	+				+1.2
1,753,975	+				+0.2
1,753,998	+				+2.0
1,753,999	-				+3.3
1,754,014	+		IAI47_08290	0.11	+1.5
1,754,015	-		IAI47_08290	0.11	+0.8
1,754,015	-		IAI47_08290	0.11	+1.3
1,754,015	-		IAI47_08290	0.11	+0.7
1,754,018	-		IAI47_08290	0.12	+1.7
1,754,100	-		IAI47_08290	0.21	+0.4
1,754,122	-		IAI47_08290	0.23	+1.2
1,754,127	-		IAI47_08290	0.24	+0.5
1,754,136	+		IAI47_08290	0.25	+1.9
1,754,136	+		IAI47_08290	0.25	+2.3
1,754,137	-		IAI47_08290	0.25	-0.0
1,754,137	-		IAI47_08290	0.25	+2.7
1,754,137	-		IAI47_08290	0.25	+1.4
1,754,146	+		IAI47_08290	0.26	+2.3
1,754,161	-		IAI47_08290	0.28	+2.8
1,754,246	+		IAI47_08290	0.37	+0.5
1,754,250	+		IAI47_08290	0.38	+1.2
1,754,251	-		IAI47_08290	0.38	+1.6
1,754,258	+		IAI47_08290	0.39	+2.0
1,754,259	-		IAI47_08290	0.39	+1.8
1,754,259	-		IAI47_08290	0.39	+2.9
1,754,259	-		IAI47_08290	0.39	+3.8
1,754,278	+		IAI47_08290	0.41	+0.7
1,754,279	-		IAI47_08290	0.41	+2.8
1,754,289	-		IAI47_08290	0.42	+1.5
1,754,299	-		IAI47_08290	0.43	+0.8
1,754,299	-		IAI47_08290	0.43	+2.8
1,754,302	+		IAI47_08290	0.44	+1.6
1,754,302	+		IAI47_08290	0.44	+1.6
1,754,302	+		IAI47_08290	0.44	+1.4
1,754,302	+		IAI47_08290	0.44	+0.8
1,754,302	+		IAI47_08290	0.44	+1.1
1,754,302	+		IAI47_08290	0.44	+0.5
1,754,303	-		IAI47_08290	0.44	+2.1
1,754,303	-		IAI47_08290	0.44	+1.4
1,754,303	-		IAI47_08290	0.44	+2.5
1,754,365	+		IAI47_08290	0.51	+1.9
1,754,365	+		IAI47_08290	0.51	+2.5
1,754,365	+		IAI47_08290	0.51	+1.5
1,754,365	+		IAI47_08290	0.51	+0.5
1,754,366	-		IAI47_08290	0.51	+1.4
1,754,366	-		IAI47_08290	0.51	+1.2
1,754,373	+		IAI47_08290	0.52	+0.3
1,754,373	+		IAI47_08290	0.52	+0.9
1,754,374	-		IAI47_08290	0.52	+1.3
1,754,392	+		IAI47_08290	0.54	+0.3
1,754,393	-		IAI47_08290	0.54	+0.6
1,754,405	+		IAI47_08290	0.55	+1.1
1,754,406	-		IAI47_08290	0.55	+2.0
1,754,406	-		IAI47_08290	0.55	+1.6
1,754,406	-		IAI47_08290	0.55	+1.4
1,754,406	-		IAI47_08290	0.55	+2.4
1,754,406	-		IAI47_08290	0.55	-0.4
1,754,416	+		IAI47_08290	0.57	+0.9
1,754,416	+		IAI47_08290	0.57	+2.6
1,754,416	+		IAI47_08290	0.57	-1.2
1,754,416	+		IAI47_08290	0.57	+0.4
1,754,417	-		IAI47_08290	0.57	+0.9
1,754,455	+		IAI47_08290	0.61	+1.7
1,754,519	-		IAI47_08290	0.68	+1.3
1,754,562	+		IAI47_08290	0.73	+1.6
1,754,562	+		IAI47_08290	0.73	+1.4
1,754,562	+		IAI47_08290	0.73	+1.3
1,754,590	+		IAI47_08290	0.76	+1.2
1,754,590	+		IAI47_08290	0.76	+0.2
1,754,591	-		IAI47_08290	0.76	+2.4
1,754,636	+		IAI47_08290	0.81	+1.8
1,754,646	+		IAI47_08290	0.82	+0.6
1,754,668	-		IAI47_08290	0.85	+2.2
1,754,756	+				+0.6
1,754,774	+				-1.4
1,754,845	+				+1.8
1,754,845	+				+0.4
1,754,845	+				+2.5
1,754,846	-				+1.2
1,754,846	-				+1.5
1,754,846	-				+2.5
1,754,885	+				+0.6
1,754,896	+		IAI47_08295	0.10	+2.1
1,754,896	+		IAI47_08295	0.10	+1.4
1,754,920	+		IAI47_08295	0.13	+2.1
1,754,941	+		IAI47_08295	0.15	+1.2
1,754,978	+		IAI47_08295	0.19	+2.8
1,754,978	+		IAI47_08295	0.19	+1.2
1,754,978	+		IAI47_08295	0.19	+1.9
1,754,978	+		IAI47_08295	0.19	+1.0
1,754,979	-		IAI47_08295	0.19	+0.5
1,754,983	+		IAI47_08295	0.20	+1.9
1,754,983	+		IAI47_08295	0.20	+2.0
1,755,035	-		IAI47_08295	0.25	+1.4
1,755,088	+		IAI47_08295	0.31	+1.8
1,755,089	-		IAI47_08295	0.31	+1.3
1,755,091	+		IAI47_08295	0.31	+2.0
1,755,091	+		IAI47_08295	0.31	+2.1
1,755,091	+		IAI47_08295	0.31	+4.0
1,755,091	+		IAI47_08295	0.31	+1.5
1,755,092	-		IAI47_08295	0.31	+0.7
1,755,104	-		IAI47_08295	0.32	+0.3
1,755,104	-		IAI47_08295	0.32	+1.3
1,755,150	+		IAI47_08295	0.37	+1.8
1,755,193	+		IAI47_08295	0.42	+1.6
1,755,193	+		IAI47_08295	0.42	+1.0
1,755,194	-		IAI47_08295	0.42	-0.2
1,755,244	+		IAI47_08295	0.47	+0.9
1,755,253	+		IAI47_08295	0.48	+1.0
1,755,281	-		IAI47_08295	0.51	+3.6
1,755,281	-		IAI47_08295	0.51	+0.8
1,755,308	+		IAI47_08295	0.54	+2.1
1,755,308	+		IAI47_08295	0.54	+1.5
1,755,308	+		IAI47_08295	0.54	+1.1
1,755,308	+		IAI47_08295	0.54	+0.4
1,755,308	+		IAI47_08295	0.54	+2.0
1,755,308	+		IAI47_08295	0.54	+1.1
1,755,308	+		IAI47_08295	0.54	-0.6
1,755,308	+		IAI47_08295	0.54	+1.1
1,755,308	+		IAI47_08295	0.54	+2.4
1,755,309	-		IAI47_08295	0.54	+1.8
1,755,309	-		IAI47_08295	0.54	+1.8
1,755,309	-		IAI47_08295	0.54	+1.9
1,755,309	-		IAI47_08295	0.54	+0.8
1,755,309	-		IAI47_08295	0.54	+0.8
1,755,309	-		IAI47_08295	0.54	+1.2
1,755,310	+		IAI47_08295	0.54	-0.0
1,755,310	+		IAI47_08295	0.54	+0.7
1,755,310	+		IAI47_08295	0.54	+1.0
1,755,310	+		IAI47_08295	0.54	+1.4
1,755,310	+		IAI47_08295	0.54	+1.4
1,755,310	+		IAI47_08295	0.54	+1.6
1,755,310	+		IAI47_08295	0.54	+0.7
1,755,310	+		IAI47_08295	0.54	+1.6
1,755,310	+		IAI47_08295	0.54	+0.8
1,755,311	-		IAI47_08295	0.54	+1.2
1,755,311	-		IAI47_08295	0.54	+1.5
1,755,311	-		IAI47_08295	0.54	+2.6
1,755,311	-		IAI47_08295	0.54	+1.4
1,755,311	-		IAI47_08295	0.54	+0.7
1,755,311	-		IAI47_08295	0.54	+1.2
1,755,311	-		IAI47_08295	0.54	+2.5
1,755,311	-		IAI47_08295	0.54	+1.8
1,755,311	-		IAI47_08295	0.54	+1.2
1,755,311	-		IAI47_08295	0.54	+0.7
1,755,333	+		IAI47_08295	0.57	+1.9
1,755,334	-		IAI47_08295	0.57	+1.4
1,755,334	-		IAI47_08295	0.57	+1.9
1,755,347	-		IAI47_08295	0.58	+1.2
1,755,382	+		IAI47_08295	0.62	+1.4
1,755,382	+		IAI47_08295	0.62	+1.7
1,755,383	-		IAI47_08295	0.62	+1.3
1,755,383	-		IAI47_08295	0.62	+1.8
1,755,383	-		IAI47_08295	0.62	+1.8
1,755,398	+		IAI47_08295	0.64	+2.4
1,755,412	+		IAI47_08295	0.65	+1.5
1,755,419	+		IAI47_08295	0.66	+1.6
1,755,420	-		IAI47_08295	0.66	+1.7
1,755,420	-		IAI47_08295	0.66	+0.7
1,755,420	-		IAI47_08295	0.66	+2.0
1,755,500	-		IAI47_08295	0.75	+0.5
1,755,505	-		IAI47_08295	0.75	+1.6
1,755,513	+		IAI47_08295	0.76	+1.4
1,755,577	+		IAI47_08295	0.83	+1.3
1,755,578	-		IAI47_08295	0.83	+0.4
1,755,712	+				+1.1
1,755,712	+				+0.5
1,755,712	+				-0.4
1,755,713	-				+0.4
1,755,713	-				+0.7
1,755,713	-				+0.7
1,755,750	+				+0.4
1,755,751	-				+0.8
1,755,751	-				+0.6
1,755,769	+				-0.6
1,755,800	+				+1.2
1,755,800	+				-0.4
1,755,800	+				-0.4
1,755,800	+				+2.9
1,755,800	+				-0.6
1,755,800	+				+1.5
1,755,800	+				+0.4
1,755,800	+				+0.4
1,755,800	+				+1.2
1,755,800	+				+0.2
1,755,801	-				+1.0
1,755,801	-				-1.1
1,755,801	-				+0.2