Strain Fitness in Pantoea sp. MT58 around IAI47_08225

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,738,563	+		IAI47_08220	0.69	-1.3
1,738,564	-		IAI47_08220	0.69	+0.2
1,738,630	+		IAI47_08220	0.74	-0.0
1,738,631	-		IAI47_08220	0.74	-0.6
1,738,713	+		IAI47_08220	0.81	-0.3
1,738,736	-		IAI47_08220	0.82	+1.1
1,738,741	+		IAI47_08220	0.83	+0.8
1,738,741	+		IAI47_08220	0.83	+0.2
1,738,741	+		IAI47_08220	0.83	-0.4
1,738,741	+		IAI47_08220	0.83	-0.5
1,738,742	-		IAI47_08220	0.83	-0.8
1,738,752	+		IAI47_08220	0.84	-0.7
1,738,752	+		IAI47_08220	0.84	+0.2
1,738,752	+		IAI47_08220	0.84	+0.3
1,738,753	-		IAI47_08220	0.84	+0.2
1,738,753	-		IAI47_08220	0.84	+0.2
1,738,784	+		IAI47_08220	0.86	-0.6
1,738,784	+		IAI47_08220	0.86	-0.4
1,738,784	+		IAI47_08220	0.86	+0.5
1,738,785	-		IAI47_08220	0.86	-0.6
1,738,799	-		IAI47_08220	0.87	+0.5
1,738,867	+				+0.1
1,738,867	+				-0.6
1,738,867	+				+0.6
1,738,867	+				+0.9
1,738,868	-				+0.4
1,738,869	+				-1.1
1,738,869	+				+0.2
1,738,869	+				+0.2
1,738,869	+				-0.8
1,738,870	-				+0.4
1,738,870	-				+0.2
1,738,870	-				+0.8
1,738,891	+				-0.2
1,738,930	+				-0.4
1,738,931	-				+0.7
1,738,931	-				+0.8
1,738,934	+				+0.1
1,738,934	+				-0.3
1,738,934	+				+0.5
1,738,934	+				+0.2
1,738,934	+				-0.7
1,739,021	+				-0.6
1,739,021	+				-0.6
1,739,022	-				+0.2
1,739,024	+				+1.0
1,739,068	-				-0.8
1,739,079	+				-0.6
1,739,079	+				+1.2
1,739,079	+				+0.6
1,739,115	+				+1.6
1,739,124	+				+0.2
1,739,125	-				+0.9
1,739,160	+				+0.9
1,739,167	-				+0.4
1,739,201	-				-0.6
1,739,203	+				+0.6
1,739,204	-				+0.6
1,739,219	+				+1.4
1,739,219	+				+0.8
1,739,220	-				-0.6
1,739,220	-				+0.4
1,739,220	-				-0.6
1,739,220	-				-0.7
1,739,231	+				-0.0
1,739,232	-				-1.4
1,739,232	-				+0.8
1,739,232	-				-0.4
1,739,232	-				-0.5
1,739,232	-				+0.5
1,739,266	-				+0.2
1,739,285	+				+0.8
1,739,286	-				-1.2
1,739,289	+				-0.3
1,739,289	+				+0.8
1,739,290	-				-0.3
1,739,360	+				+0.2
1,739,360	+				-0.3
1,739,361	-				-2.1
1,739,411	-				-0.1
1,739,411	-				-1.4
1,739,411	-				-0.1
1,739,417	+				+0.8
1,739,418	-				+0.8
1,739,438	+				+1.2
1,739,439	-				+0.6
1,739,439	-				+0.6
1,739,461	+				-0.6
1,739,475	-				-0.8
1,739,531	+				-0.2
1,739,532	-				+0.5
1,739,645	+		IAI47_08225	0.14	-0.4
1,739,645	+		IAI47_08225	0.14	-0.6
1,739,645	+		IAI47_08225	0.14	+1.0
1,739,645	+		IAI47_08225	0.14	-1.1
1,739,645	+		IAI47_08225	0.14	-0.4
1,739,645	+		IAI47_08225	0.14	+0.6
1,739,645	+		IAI47_08225	0.14	-0.3
1,739,645	+		IAI47_08225	0.14	+0.6
1,739,646	-		IAI47_08225	0.14	+0.7
1,739,646	-		IAI47_08225	0.14	+0.4
1,739,646	-		IAI47_08225	0.14	+0.2
1,739,681	+		IAI47_08225	0.19	+1.8
1,739,711	+		IAI47_08225	0.23	+0.8
1,739,711	+		IAI47_08225	0.23	+0.7
1,739,712	-		IAI47_08225	0.23	-1.6
1,739,730	+		IAI47_08225	0.25	+1.2
1,739,731	-		IAI47_08225	0.25	+0.1
1,739,735	+		IAI47_08225	0.26	+0.8
1,739,735	+		IAI47_08225	0.26	+0.8
1,739,735	+		IAI47_08225	0.26	-0.1
1,739,736	-		IAI47_08225	0.26	-1.0
1,739,736	-		IAI47_08225	0.26	+0.3
1,739,743	+		IAI47_08225	0.27	-0.4
1,739,744	-		IAI47_08225	0.27	-2.1
1,739,744	-		IAI47_08225	0.27	-0.8
1,739,744	-		IAI47_08225	0.27	-0.7
1,739,789	+		IAI47_08225	0.33	+1.0
1,739,831	+		IAI47_08225	0.38	-0.8
1,739,834	+		IAI47_08225	0.38	+0.6
1,739,835	-		IAI47_08225	0.38	-2.1
1,739,835	-		IAI47_08225	0.38	+0.3
1,739,853	-		IAI47_08225	0.41	+1.2
1,739,869	+		IAI47_08225	0.43	-0.5
1,739,869	+		IAI47_08225	0.43	-0.7
1,739,870	-		IAI47_08225	0.43	+0.2
1,739,870	-		IAI47_08225	0.43	-0.8
1,739,910	-		IAI47_08225	0.48	+2.0
1,739,931	+		IAI47_08225	0.51	-1.4
1,739,931	+		IAI47_08225	0.51	-1.1
1,739,946	+		IAI47_08225	0.52	-0.4
1,739,946	+		IAI47_08225	0.52	-1.4
1,739,981	+		IAI47_08225	0.57	-2.4
1,739,981	+		IAI47_08225	0.57	-0.8
1,739,981	+		IAI47_08225	0.57	+1.0
1,739,982	-		IAI47_08225	0.57	-1.8
1,739,982	-		IAI47_08225	0.57	+1.3
1,739,988	+		IAI47_08225	0.58	+1.0
1,739,988	+		IAI47_08225	0.58	-1.0
1,739,988	+		IAI47_08225	0.58	+0.4
1,739,989	-		IAI47_08225	0.58	-0.0
1,740,016	+		IAI47_08225	0.61	-1.2
1,740,036	+		IAI47_08225	0.64	-0.4
1,740,164	+		IAI47_08225	0.80	+0.2
1,740,165	-		IAI47_08225	0.80	-0.0
1,740,167	+		IAI47_08225	0.80	-1.2
1,740,168	-		IAI47_08225	0.81	-1.4
1,740,168	-		IAI47_08225	0.81	-0.6
1,740,168	-		IAI47_08225	0.81	-0.2
1,740,168	-		IAI47_08225	0.81	+0.6
1,740,312	+				-1.4
1,740,312	+				-1.8
1,740,312	+				-0.4
1,740,313	-				+0.7
1,740,313	-				-0.2
1,740,313	-				+0.8
1,740,314	+				-0.8
1,740,314	+				+0.2
1,740,314	+				-0.1
1,740,314	+				+0.1
1,740,314	+				-0.4
1,740,314	+				-0.8
1,740,314	+				+0.3
1,740,314	+				-2.0
1,740,315	-				+2.3
1,740,315	-				-0.6
1,740,315	-				-1.4
1,740,315	-				+0.5
1,740,318	+				+0.2
1,740,318	+				+0.8
1,740,319	-				+0.4
1,740,319	-				+1.2
1,740,333	+				-1.6
1,740,333	+				-2.1
1,740,334	-				+0.8
1,740,334	-				-0.8
1,740,334	-				-0.6
1,740,410	-				+1.0
1,740,413	-				+3.2
1,740,457	+				+0.1
1,740,470	-				-0.2
1,740,516	-				-0.7
1,740,539	-				+1.2
1,740,585	-				-2.1
1,740,589	+				+0.9
1,740,590	-				+0.8
1,740,590	-				+0.8
1,740,590	-				-0.1
1,740,595	-				-1.0
1,740,646	+				+0.3
1,740,647	-				+0.2
1,740,666	+				-0.4
1,740,667	-				-0.2
1,740,682	+				-1.1
1,740,682	+				+0.2
1,740,706	+				-0.5
1,740,738	+				-0.4
1,740,738	+				+0.8
1,740,796	+		IAI47_08230	0.12	-0.0
1,740,892	-		IAI47_08230	0.17	-0.1
1,740,901	+		IAI47_08230	0.18	+1.1
1,740,902	-		IAI47_08230	0.18	-0.8
1,740,902	-		IAI47_08230	0.18	-0.2
1,740,908	+		IAI47_08230	0.18	+0.2
1,740,909	-		IAI47_08230	0.18	+0.4
1,740,910	+		IAI47_08230	0.18	+0.7
1,740,911	-		IAI47_08230	0.18	-0.2
1,740,911	-		IAI47_08230	0.18	-0.6
1,740,928	+		IAI47_08230	0.19	-0.2
1,740,928	+		IAI47_08230	0.19	+1.5
1,740,964	+		IAI47_08230	0.21	+0.7
1,740,965	-		IAI47_08230	0.21	+0.8
1,740,974	-		IAI47_08230	0.21	-0.1
1,740,988	+		IAI47_08230	0.22	+1.3
1,740,989	-		IAI47_08230	0.22	+1.2
1,740,999	+		IAI47_08230	0.23	-0.2
1,741,000	-		IAI47_08230	0.23	+1.2
1,741,000	-		IAI47_08230	0.23	+1.8
1,741,041	+		IAI47_08230	0.25	-0.1
1,741,042	-		IAI47_08230	0.25	-0.6
1,741,042	-		IAI47_08230	0.25	-0.8
1,741,042	-		IAI47_08230	0.25	+0.8
1,741,045	+		IAI47_08230	0.25	-1.6
1,741,073	-		IAI47_08230	0.26	-0.9
1,741,078	+		IAI47_08230	0.27	+0.2
1,741,088	-		IAI47_08230	0.27	-0.4
1,741,088	-		IAI47_08230	0.27	-0.6
1,741,088	-		IAI47_08230	0.27	+0.5
1,741,114	-		IAI47_08230	0.29	-1.0
1,741,117	+		IAI47_08230	0.29	+2.0
1,741,117	+		IAI47_08230	0.29	+0.4
1,741,117	+		IAI47_08230	0.29	+1.7
1,741,117	+		IAI47_08230	0.29	-1.4
1,741,118	-		IAI47_08230	0.29	-0.2
1,741,118	-		IAI47_08230	0.29	+0.2
1,741,118	-		IAI47_08230	0.29	-1.6
1,741,202	+		IAI47_08230	0.33	-0.5
1,741,202	+		IAI47_08230	0.33	-0.8
1,741,202	+		IAI47_08230	0.33	+2.2
1,741,202	+		IAI47_08230	0.33	+1.8
1,741,203	-		IAI47_08230	0.33	-0.2
1,741,203	-		IAI47_08230	0.33	-0.4
1,741,203	-		IAI47_08230	0.33	-1.0
1,741,204	+		IAI47_08230	0.33	+0.4
1,741,204	+		IAI47_08230	0.33	-0.8
1,741,204	+		IAI47_08230	0.33	-0.3
1,741,204	+		IAI47_08230	0.33	+0.1
1,741,205	-		IAI47_08230	0.33	-0.1
1,741,219	-		IAI47_08230	0.34	+0.8
1,741,266	+		IAI47_08230	0.37	-0.2
1,741,266	+		IAI47_08230	0.37	+0.3
1,741,304	-		IAI47_08230	0.39	-0.5
1,741,312	-		IAI47_08230	0.39	-1.8
1,741,312	-		IAI47_08230	0.39	-0.4