Strain Fitness in Pantoea sp. MT58 around IAI47_08005

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,689,874	+		IAI47_07995	0.63	+2.8
1,689,874	+		IAI47_07995	0.63	+2.4
1,689,910	+		IAI47_07995	0.67	+2.5
1,689,910	+		IAI47_07995	0.67	+1.8
1,689,911	-		IAI47_07995	0.67	+1.2
1,689,911	-		IAI47_07995	0.67	+0.7
1,690,078	+		IAI47_07995	0.83	+1.9
1,690,078	+		IAI47_07995	0.83	+1.2
1,690,079	-		IAI47_07995	0.83	+1.8
1,690,123	+		IAI47_07995	0.88	+3.0
1,690,124	-		IAI47_07995	0.88	+1.1
1,690,134	+		IAI47_07995	0.89	+2.1
1,690,135	-		IAI47_07995	0.89	+2.3
1,690,237	+				+2.2
1,690,238	-				+2.4
1,690,271	+				+2.2
1,690,271	+				+2.0
1,690,271	+				+2.8
1,690,272	-				+0.2
1,690,287	+				+1.2
1,690,287	+				+1.1
1,690,288	-				-0.6
1,690,288	-				+0.1
1,690,288	-				+0.9
1,690,311	+		IAI47_08000	0.12	+1.2
1,690,312	-		IAI47_08000	0.13	+0.9
1,690,438	+		IAI47_08000	0.38	+2.1
1,690,438	+		IAI47_08000	0.38	+1.1
1,690,439	-		IAI47_08000	0.39	+1.4
1,690,439	-		IAI47_08000	0.39	+1.2
1,690,439	-		IAI47_08000	0.39	+0.7
1,690,485	-		IAI47_08000	0.48	+1.6
1,690,491	+		IAI47_08000	0.49	+0.6
1,690,492	-		IAI47_08000	0.50	+1.1
1,690,492	-		IAI47_08000	0.50	+1.9
1,690,492	-		IAI47_08000	0.50	+1.3
1,690,495	+		IAI47_08000	0.50	+1.6
1,690,495	+		IAI47_08000	0.50	+2.6
1,690,495	+		IAI47_08000	0.50	+1.8
1,690,495	+		IAI47_08000	0.50	+2.3
1,690,495	+		IAI47_08000	0.50	+2.4
1,690,496	-		IAI47_08000	0.50	+1.1
1,690,496	-		IAI47_08000	0.50	+0.8
1,690,496	-		IAI47_08000	0.50	+1.4
1,690,541	+		IAI47_08000	0.60	+2.1
1,690,541	+		IAI47_08000	0.60	+1.9
1,690,541	+		IAI47_08000	0.60	+1.5
1,690,542	-		IAI47_08000	0.60	+0.9
1,690,542	-		IAI47_08000	0.60	+2.2
1,690,542	-		IAI47_08000	0.60	-0.3
1,690,542	-		IAI47_08000	0.60	+1.9
1,690,542	-		IAI47_08000	0.60	+0.9
1,690,542	-		IAI47_08000	0.60	+1.1
1,690,547	+		IAI47_08000	0.61	+2.7
1,690,547	+		IAI47_08000	0.61	+1.9
1,690,548	-		IAI47_08000	0.61	+0.7
1,690,548	-		IAI47_08000	0.61	-0.2
1,690,619	+		IAI47_08000	0.76	+2.1
1,690,620	-		IAI47_08000	0.76	-0.4
1,690,620	-		IAI47_08000	0.76	+0.6
1,690,620	-		IAI47_08000	0.76	+1.4
1,690,642	+		IAI47_08000	0.80	+1.4
1,690,643	-		IAI47_08000	0.81	+1.8
1,690,643	-		IAI47_08000	0.81	+1.9
1,690,643	-		IAI47_08000	0.81	+2.2
1,690,643	-		IAI47_08000	0.81	+0.9
1,690,689	+				-2.1
1,690,690	-				+0.7
1,690,692	+				+2.7
1,690,692	+				+1.1
1,690,693	-				+3.1
1,690,693	-				+1.8
1,690,693	-				+4.4
1,690,693	-				-0.0
1,690,693	-				+1.9
1,690,693	-				+0.2
1,690,700	+				+0.9
1,690,701	-				+1.6
1,690,701	-				-0.6
1,690,746	+				+0.6
1,690,747	-				-0.1
1,690,747	-				+0.5
1,690,747	-				+0.7
1,690,747	-				-0.2
1,690,747	-				+1.9
1,690,761	-				+0.7
1,690,761	-				-0.5
1,690,761	-				+0.7
1,690,761	-				+0.7
1,690,761	-				+0.6
1,690,761	-				+1.0
1,690,792	+				+3.2
1,690,804	-				+0.4
1,690,804	-				+1.0
1,690,838	+				+2.2
1,690,844	+				+2.2
1,690,845	-				-0.5
1,690,845	-				+0.7
1,690,845	-				-0.1
1,690,936	+				+1.1
1,690,936	+				+1.6
1,690,937	-				+0.6
1,690,946	-				+2.3
1,691,065	+		IAI47_08005	0.16	+1.0
1,691,065	+		IAI47_08005	0.16	+1.2
1,691,068	+		IAI47_08005	0.16	+2.3
1,691,135	-		IAI47_08005	0.21	+1.0
1,691,135	-		IAI47_08005	0.21	+1.2
1,691,152	+		IAI47_08005	0.23	+2.0
1,691,153	-		IAI47_08005	0.23	+0.2
1,691,179	+		IAI47_08005	0.25	+1.7
1,691,179	+		IAI47_08005	0.25	+1.5
1,691,180	-		IAI47_08005	0.25	+1.4
1,691,180	-		IAI47_08005	0.25	+0.5
1,691,407	+		IAI47_08005	0.43	+2.7
1,691,407	+		IAI47_08005	0.43	+1.3
1,691,446	+		IAI47_08005	0.46	+0.4
1,691,447	-		IAI47_08005	0.46	+1.3
1,691,447	-		IAI47_08005	0.46	+0.9
1,691,452	+		IAI47_08005	0.46	+1.2
1,691,452	+		IAI47_08005	0.46	+2.3
1,691,452	+		IAI47_08005	0.46	+1.7
1,691,452	+		IAI47_08005	0.46	+1.3
1,691,452	+		IAI47_08005	0.46	+1.9
1,691,453	-		IAI47_08005	0.46	+1.5
1,691,453	-		IAI47_08005	0.46	-0.6
1,691,453	-		IAI47_08005	0.46	+1.6
1,691,453	-		IAI47_08005	0.46	+0.6
1,691,453	-		IAI47_08005	0.46	+1.9
1,691,479	+		IAI47_08005	0.48	+2.0
1,691,479	+		IAI47_08005	0.48	+1.2
1,691,479	+		IAI47_08005	0.48	+3.9
1,691,480	-		IAI47_08005	0.49	-0.2
1,691,480	-		IAI47_08005	0.49	+0.8
1,691,790	-		IAI47_08005	0.73	+1.1
1,691,816	-		IAI47_08005	0.75	+0.9
1,691,842	+		IAI47_08005	0.77	+1.2
1,691,842	+		IAI47_08005	0.77	+1.4
1,691,845	+		IAI47_08005	0.77	+2.2
1,691,846	-		IAI47_08005	0.77	+1.2
1,691,857	+		IAI47_08005	0.78	+0.5
1,692,091	+				+0.7
1,692,092	-				+0.6
1,692,112	+				+1.2
1,692,112	+				+1.3
1,692,112	+				+1.9
1,692,112	+				+1.4
1,692,113	-				+2.2
1,692,113	-				+1.2
1,692,113	-				+1.9
1,692,124	+				+1.4
1,692,125	-				+1.0
1,692,125	-				+0.4
1,692,203	-		IAI47_08010	0.17	+1.4
1,692,240	-		IAI47_08010	0.25	+2.6
1,692,240	-		IAI47_08010	0.25	+2.5
1,692,240	-		IAI47_08010	0.25	+0.5
1,692,306	+		IAI47_08010	0.40	+1.5
1,692,306	+		IAI47_08010	0.40	+1.3
1,692,307	-		IAI47_08010	0.41	+1.5
1,692,318	+		IAI47_08010	0.43	+1.5
1,692,319	-		IAI47_08010	0.43	+1.3
1,692,354	+		IAI47_08010	0.51	+1.3
1,692,354	+		IAI47_08010	0.51	+1.4
1,692,365	+		IAI47_08010	0.54	+1.2
1,692,366	-		IAI47_08010	0.54	+1.2
1,692,366	-		IAI47_08010	0.54	+2.0
1,692,366	-		IAI47_08010	0.54	+1.4
1,692,366	-		IAI47_08010	0.54	+1.5
1,692,402	+		IAI47_08010	0.62	+2.1
1,692,402	+		IAI47_08010	0.62	+1.7
1,692,402	+		IAI47_08010	0.62	+2.5
1,692,402	+		IAI47_08010	0.62	+1.0
1,692,403	-		IAI47_08010	0.62	+1.9
1,692,403	-		IAI47_08010	0.62	+1.7
1,692,403	-		IAI47_08010	0.62	+0.7
1,692,403	-		IAI47_08010	0.62	+1.7
1,692,425	+		IAI47_08010	0.67	+1.9
1,692,437	+		IAI47_08010	0.70	+2.0
1,692,500	+		IAI47_08010	0.84	+2.3
1,692,500	+		IAI47_08010	0.84	+1.2
1,692,500	+		IAI47_08010	0.84	+2.1
1,692,500	+		IAI47_08010	0.84	+1.9
1,692,501	-		IAI47_08010	0.84	+1.5
1,692,501	-		IAI47_08010	0.84	+1.6
1,692,501	-		IAI47_08010	0.84	+1.3
1,692,501	-		IAI47_08010	0.84	+2.3
1,692,501	-		IAI47_08010	0.84	+2.6
1,692,501	-		IAI47_08010	0.84	-0.1
1,692,546	+				+2.2
1,692,546	+				+2.2
1,692,547	-				+1.3
1,692,547	-				+1.5
1,692,547	-				+0.4
1,692,577	+				+1.3
1,692,578	-				-0.3
1,692,587	+				+1.3
1,692,587	+				-0.8
1,692,588	-				-0.7
1,692,588	-				+0.4
1,692,588	-				-0.4
1,692,639	+				+1.2
1,692,706	+				+2.2
1,692,735	+		IAI47_08015	0.11	+3.0
1,692,736	-		IAI47_08015	0.11	+1.6
1,692,736	-		IAI47_08015	0.11	+1.2
1,692,736	-		IAI47_08015	0.11	+1.1
1,692,736	-		IAI47_08015	0.11	+1.0
1,692,790	+		IAI47_08015	0.15	+2.5
1,692,811	-		IAI47_08015	0.16	+1.8
1,692,811	-		IAI47_08015	0.16	+1.4
1,692,811	-		IAI47_08015	0.16	+1.3
1,692,985	+		IAI47_08015	0.29	+1.9
1,692,986	-		IAI47_08015	0.29	+1.2
1,692,986	-		IAI47_08015	0.29	+1.2
1,692,986	-		IAI47_08015	0.29	+2.0
1,692,986	-		IAI47_08015	0.29	+1.8
1,692,988	-		IAI47_08015	0.29	+2.0
1,692,988	-		IAI47_08015	0.29	+1.5
1,692,988	-		IAI47_08015	0.29	+1.2
1,692,988	-		IAI47_08015	0.29	+1.6
1,692,988	-		IAI47_08015	0.29	+1.2