Strain Fitness in Pantoea sp. MT58 around IAI47_08000

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,689,309	+				+2.4
1,689,330	+				+1.8
1,689,330	+				+1.6
1,689,341	+		IAI47_07995	0.10	+2.2
1,689,342	-		IAI47_07995	0.10	+1.4
1,689,342	-		IAI47_07995	0.10	-0.3
1,689,517	+				+1.6
1,689,582	+		IAI47_07995	0.34	+0.7
1,689,598	+		IAI47_07995	0.36	+3.2
1,689,598	+		IAI47_07995	0.36	+2.3
1,689,598	+		IAI47_07995	0.36	+1.6
1,689,599	-		IAI47_07995	0.36	+1.9
1,689,599	-		IAI47_07995	0.36	+1.5
1,689,601	+		IAI47_07995	0.36	+0.9
1,689,601	+		IAI47_07995	0.36	+2.1
1,689,601	+		IAI47_07995	0.36	+1.3
1,689,601	+		IAI47_07995	0.36	+1.4
1,689,602	-		IAI47_07995	0.36	+1.5
1,689,602	-		IAI47_07995	0.36	+1.7
1,689,602	-		IAI47_07995	0.36	+1.5
1,689,619	+		IAI47_07995	0.38	+0.9
1,689,646	+		IAI47_07995	0.40	+0.8
1,689,646	+		IAI47_07995	0.40	+2.7
1,689,655	+		IAI47_07995	0.41	+0.8
1,689,655	+		IAI47_07995	0.41	+1.2
1,689,655	+		IAI47_07995	0.41	+2.7
1,689,658	-		IAI47_07995	0.42	+1.4
1,689,688	+		IAI47_07995	0.45	+2.0
1,689,689	-		IAI47_07995	0.45	+1.2
1,689,689	-		IAI47_07995	0.45	+1.1
1,689,707	+		IAI47_07995	0.46	+3.5
1,689,707	+		IAI47_07995	0.46	+2.3
1,689,707	+		IAI47_07995	0.46	+1.0
1,689,707	+		IAI47_07995	0.46	+2.6
1,689,707	+		IAI47_07995	0.46	+0.6
1,689,707	+		IAI47_07995	0.46	+1.2
1,689,708	-		IAI47_07995	0.47	+1.1
1,689,708	-		IAI47_07995	0.47	+1.5
1,689,708	-		IAI47_07995	0.47	+0.9
1,689,711	+				+2.0
1,689,711	+		IAI47_07995	0.47	+1.8
1,689,711	+		IAI47_07995	0.47	+1.7
1,689,711	+		IAI47_07995	0.47	+1.5
1,689,711	+		IAI47_07995	0.47	+2.2
1,689,711	+		IAI47_07995	0.47	+1.8
1,689,711	+		IAI47_07995	0.47	+1.3
1,689,712	-		IAI47_07995	0.47	+1.7
1,689,712	-		IAI47_07995	0.47	+1.6
1,689,712	-		IAI47_07995	0.47	+1.9
1,689,712	-		IAI47_07995	0.47	+2.1
1,689,712	-		IAI47_07995	0.47	+0.6
1,689,712	-		IAI47_07995	0.47	+1.0
1,689,712	-		IAI47_07995	0.47	+1.5
1,689,712	-		IAI47_07995	0.47	+1.8
1,689,712	-		IAI47_07995	0.47	+1.5
1,689,712	-		IAI47_07995	0.47	+3.0
1,689,712	-		IAI47_07995	0.47	+1.2
1,689,712	-		IAI47_07995	0.47	+0.9
1,689,729	+		IAI47_07995	0.49	-0.6
1,689,753	+		IAI47_07995	0.51	+3.7
1,689,753	+		IAI47_07995	0.51	+1.5
1,689,754	-		IAI47_07995	0.51	+1.8
1,689,754	-		IAI47_07995	0.51	+1.7
1,689,754	-		IAI47_07995	0.51	+1.5
1,689,808	+		IAI47_07995	0.56	+2.6
1,689,874	+		IAI47_07995	0.63	+2.8
1,689,874	+		IAI47_07995	0.63	+2.4
1,689,910	+		IAI47_07995	0.67	+2.5
1,689,910	+		IAI47_07995	0.67	+1.8
1,689,911	-		IAI47_07995	0.67	+1.2
1,689,911	-		IAI47_07995	0.67	+0.7
1,690,078	+		IAI47_07995	0.83	+1.9
1,690,078	+		IAI47_07995	0.83	+1.2
1,690,079	-		IAI47_07995	0.83	+1.8
1,690,123	+		IAI47_07995	0.88	+3.0
1,690,124	-		IAI47_07995	0.88	+1.1
1,690,134	+		IAI47_07995	0.89	+2.1
1,690,135	-		IAI47_07995	0.89	+2.3
1,690,237	+				+2.2
1,690,238	-				+2.4
1,690,271	+				+2.2
1,690,271	+				+2.0
1,690,271	+				+2.8
1,690,272	-				+0.2
1,690,287	+				+1.2
1,690,287	+				+1.1
1,690,288	-				-0.6
1,690,288	-				+0.1
1,690,288	-				+0.9
1,690,311	+		IAI47_08000	0.12	+1.2
1,690,312	-		IAI47_08000	0.13	+0.9
1,690,438	+		IAI47_08000	0.38	+2.1
1,690,438	+		IAI47_08000	0.38	+1.1
1,690,439	-		IAI47_08000	0.39	+1.4
1,690,439	-		IAI47_08000	0.39	+1.2
1,690,439	-		IAI47_08000	0.39	+0.7
1,690,485	-		IAI47_08000	0.48	+1.6
1,690,491	+		IAI47_08000	0.49	+0.6
1,690,492	-		IAI47_08000	0.50	+1.1
1,690,492	-		IAI47_08000	0.50	+1.9
1,690,492	-		IAI47_08000	0.50	+1.3
1,690,495	+		IAI47_08000	0.50	+1.6
1,690,495	+		IAI47_08000	0.50	+2.6
1,690,495	+		IAI47_08000	0.50	+1.8
1,690,495	+		IAI47_08000	0.50	+2.3
1,690,495	+		IAI47_08000	0.50	+2.4
1,690,496	-		IAI47_08000	0.50	+1.1
1,690,496	-		IAI47_08000	0.50	+0.8
1,690,496	-		IAI47_08000	0.50	+1.4
1,690,541	+		IAI47_08000	0.60	+2.1
1,690,541	+		IAI47_08000	0.60	+1.9
1,690,541	+		IAI47_08000	0.60	+1.5
1,690,542	-		IAI47_08000	0.60	+0.9
1,690,542	-		IAI47_08000	0.60	+2.2
1,690,542	-		IAI47_08000	0.60	-0.3
1,690,542	-		IAI47_08000	0.60	+1.9
1,690,542	-		IAI47_08000	0.60	+0.9
1,690,542	-		IAI47_08000	0.60	+1.1
1,690,547	+		IAI47_08000	0.61	+2.7
1,690,547	+		IAI47_08000	0.61	+1.9
1,690,548	-		IAI47_08000	0.61	+0.7
1,690,548	-		IAI47_08000	0.61	-0.2
1,690,619	+		IAI47_08000	0.76	+2.1
1,690,620	-		IAI47_08000	0.76	-0.4
1,690,620	-		IAI47_08000	0.76	+0.6
1,690,620	-		IAI47_08000	0.76	+1.4
1,690,642	+		IAI47_08000	0.80	+1.4
1,690,643	-		IAI47_08000	0.81	+1.8
1,690,643	-		IAI47_08000	0.81	+1.9
1,690,643	-		IAI47_08000	0.81	+2.2
1,690,643	-		IAI47_08000	0.81	+0.9
1,690,689	+				-2.1
1,690,690	-				+0.7
1,690,692	+				+2.7
1,690,692	+				+1.1
1,690,693	-				+3.1
1,690,693	-				+1.8
1,690,693	-				+4.4
1,690,693	-				-0.0
1,690,693	-				+1.9
1,690,693	-				+0.2
1,690,700	+				+0.9
1,690,701	-				+1.6
1,690,701	-				-0.6
1,690,746	+				+0.6
1,690,747	-				-0.1
1,690,747	-				+0.5
1,690,747	-				+0.7
1,690,747	-				-0.2
1,690,747	-				+1.9
1,690,761	-				+0.7
1,690,761	-				-0.5
1,690,761	-				+0.7
1,690,761	-				+0.7
1,690,761	-				+0.6
1,690,761	-				+1.0
1,690,792	+				+3.2
1,690,804	-				+0.4
1,690,804	-				+1.0
1,690,838	+				+2.2
1,690,844	+				+2.2
1,690,845	-				-0.5
1,690,845	-				+0.7
1,690,845	-				-0.1
1,690,936	+				+1.1
1,690,936	+				+1.6
1,690,937	-				+0.6
1,690,946	-				+2.3
1,691,065	+		IAI47_08005	0.16	+1.0
1,691,065	+		IAI47_08005	0.16	+1.2
1,691,068	+		IAI47_08005	0.16	+2.3
1,691,135	-		IAI47_08005	0.21	+1.0
1,691,135	-		IAI47_08005	0.21	+1.2
1,691,152	+		IAI47_08005	0.23	+2.0
1,691,153	-		IAI47_08005	0.23	+0.2
1,691,179	+		IAI47_08005	0.25	+1.7
1,691,179	+		IAI47_08005	0.25	+1.5
1,691,180	-		IAI47_08005	0.25	+1.4
1,691,180	-		IAI47_08005	0.25	+0.5
1,691,407	+		IAI47_08005	0.43	+2.7
1,691,407	+		IAI47_08005	0.43	+1.3
1,691,446	+		IAI47_08005	0.46	+0.4
1,691,447	-		IAI47_08005	0.46	+1.3
1,691,447	-		IAI47_08005	0.46	+0.9
1,691,452	+		IAI47_08005	0.46	+1.2
1,691,452	+		IAI47_08005	0.46	+2.3
1,691,452	+		IAI47_08005	0.46	+1.7
1,691,452	+		IAI47_08005	0.46	+1.3
1,691,452	+		IAI47_08005	0.46	+1.9
1,691,453	-		IAI47_08005	0.46	+1.5
1,691,453	-		IAI47_08005	0.46	-0.6
1,691,453	-		IAI47_08005	0.46	+1.6
1,691,453	-		IAI47_08005	0.46	+0.6
1,691,453	-		IAI47_08005	0.46	+1.9
1,691,479	+		IAI47_08005	0.48	+2.0
1,691,479	+		IAI47_08005	0.48	+1.2
1,691,479	+		IAI47_08005	0.48	+3.9
1,691,480	-		IAI47_08005	0.49	-0.2
1,691,480	-		IAI47_08005	0.49	+0.8