Strain Fitness in Pantoea sp. MT58 around IAI47_05260

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,111,046	+		IAI47_05250	0.85	-1.3
1,111,046	+		IAI47_05250	0.85	-0.1
1,111,046	+		IAI47_05250	0.85	-1.3
1,111,046	+		IAI47_05250	0.85	-0.2
1,111,046	+		IAI47_05250	0.85	+0.5
1,111,046	+		IAI47_05250	0.85	-0.3
1,111,047	-		IAI47_05250	0.85	+0.2
1,111,094	+		IAI47_05250	0.88	-0.5
1,111,140	+				-0.3
1,111,140	+				-0.3
1,111,140	+				-0.1
1,111,140	+				-0.1
1,111,141	-				+0.8
1,111,141	-				-1.8
1,111,141	-				+1.2
1,111,141	-				+0.6
1,111,141	-				-0.2
1,111,149	+				-0.1
1,111,149	+				-0.3
1,111,150	-				-0.4
1,111,150	-				+0.2
1,111,150	-				+1.2
1,111,225	+				+1.2
1,111,225	+				+1.0
1,111,225	+				+0.5
1,111,226	-				+1.8
1,111,226	-				-0.3
1,111,226	-				+1.0
1,111,248	+				-0.8
1,111,248	+				+0.0
1,111,248	+				-0.6
1,111,248	+				+1.5
1,111,248	+				+0.1
1,111,249	-				+0.0
1,111,249	-				-0.9
1,111,249	-				+0.8
1,111,364	+				+0.2
1,111,364	+				+0.0
1,111,365	-				+0.6
1,111,365	-				-0.7
1,111,365	-				+0.1
1,111,385	+				+0.2
1,111,385	+				-0.2
1,111,386	-				+0.9
1,111,386	-				-0.3
1,111,386	-				-0.3
1,111,386	-				-1.2
1,111,386	-				+1.3
1,111,419	+		IAI47_05255	0.11	-0.8
1,111,419	+		IAI47_05255	0.11	+0.8
1,111,420	-		IAI47_05255	0.11	-0.2
1,111,420	-		IAI47_05255	0.11	+1.7
1,111,420	-		IAI47_05255	0.11	+1.2
1,111,425	+		IAI47_05255	0.12	+0.1
1,111,426	-		IAI47_05255	0.12	+1.4
1,111,426	-		IAI47_05255	0.12	+0.4
1,111,426	-		IAI47_05255	0.12	+0.4
1,111,426	-		IAI47_05255	0.12	+0.6
1,111,426	-		IAI47_05255	0.12	-0.3
1,111,482	+		IAI47_05255	0.24	+0.3
1,111,482	+		IAI47_05255	0.24	+1.8
1,111,483	-		IAI47_05255	0.24	-0.2
1,111,490	+		IAI47_05255	0.26	-0.1
1,111,490	+		IAI47_05255	0.26	-1.8
1,111,490	+		IAI47_05255	0.26	+0.9
1,111,503	+		IAI47_05255	0.29	-0.8
1,111,504	-		IAI47_05255	0.29	-0.3
1,111,569	+		IAI47_05255	0.43	+1.2
1,111,569	+		IAI47_05255	0.43	+0.7
1,111,569	+		IAI47_05255	0.43	+0.3
1,111,725	-		IAI47_05255	0.76	+1.0
1,111,730	+		IAI47_05255	0.77	+0.8
1,111,730	+		IAI47_05255	0.77	+0.2
1,111,730	+		IAI47_05255	0.77	+0.8
1,111,731	-		IAI47_05255	0.77	-0.4
1,111,731	-		IAI47_05255	0.77	-0.3
1,111,797	+				+0.1
1,111,798	-				-1.8
1,111,812	+				-0.1
1,111,813	-				+0.8
1,111,813	-				-0.1
1,111,813	-				+0.0
1,111,855	+				+0.2
1,111,871	-				+2.1
1,111,873	+				-0.1
1,111,873	+				-0.2
1,111,873	+				+1.8
1,111,873	+				+1.2
1,111,873	+				-0.0
1,111,873	+				-0.1
1,111,873	+				+0.8
1,111,873	+				+1.2
1,111,874	-				-1.6
1,111,874	-				-0.3
1,111,874	-				-0.0
1,111,874	-				+1.1
1,111,908	+				+0.5
1,111,908	+				-0.9
1,111,909	-				-0.2
1,111,933	+				-0.8
1,111,934	-				-0.9
1,111,934	-				-0.3
1,111,934	-				+0.2
1,111,934	-				+0.7
1,111,934	-				-0.1
1,111,934	-				+0.2
1,111,955	+				-0.4
1,111,955	+				+1.1
1,111,955	+				+0.1
1,111,956	-				+0.4
1,111,956	-				+0.2
1,111,956	-				+0.2
1,111,956	-				+0.4
1,111,968	+				-0.2
1,111,968	+				-0.1
1,111,968	+				-0.3
1,111,969	-				+1.0
1,111,969	-				+0.4
1,111,969	-				+1.2
1,111,969	-				-0.6
1,111,969	-				+1.8
1,111,980	-				-1.3
1,111,993	+				+1.2
1,112,041	+				+0.4
1,112,041	+				+1.2
1,112,041	+				-1.8
1,112,041	+				-1.3
1,112,041	+				+0.6
1,112,042	-				+0.2
1,112,042	-				-0.2
1,112,049	+				-0.2
1,112,049	+				-0.8
1,112,050	-				-3.3
1,112,050	-				-1.8
1,112,050	-				-0.3
1,112,085	-		IAI47_05260	0.13	+0.7
1,112,087	+		IAI47_05260	0.14	+0.1
1,112,087	+		IAI47_05260	0.14	-0.9
1,112,088	-		IAI47_05260	0.14	-0.4
1,112,088	-		IAI47_05260	0.14	+0.7
1,112,088	-		IAI47_05260	0.14	-0.2
1,112,088	-		IAI47_05260	0.14	+0.1
1,112,088	-		IAI47_05260	0.14	-0.9
1,112,147	+		IAI47_05260	0.22	-1.8
1,112,148	-		IAI47_05260	0.22	+0.7
1,112,149	+		IAI47_05260	0.23	+0.2
1,112,149	+		IAI47_05260	0.23	-0.2
1,112,149	+		IAI47_05260	0.23	-1.0
1,112,149	+		IAI47_05260	0.23	-0.6
1,112,149	+		IAI47_05260	0.23	-1.9
1,112,149	+		IAI47_05260	0.23	-0.4
1,112,149	+		IAI47_05260	0.23	+0.0
1,112,149	+		IAI47_05260	0.23	-1.3
1,112,149	+		IAI47_05260	0.23	+0.1
1,112,149	+		IAI47_05260	0.23	-0.1
1,112,149	+		IAI47_05260	0.23	-1.6
1,112,149	+		IAI47_05260	0.23	-1.8
1,112,150	-		IAI47_05260	0.23	+0.6
1,112,150	-		IAI47_05260	0.23	-0.9
1,112,150	-		IAI47_05260	0.23	-0.2
1,112,150	-		IAI47_05260	0.23	+0.5
1,112,150	-		IAI47_05260	0.23	+0.9
1,112,150	-		IAI47_05260	0.23	+0.2
1,112,150	-		IAI47_05260	0.23	+1.6
1,112,150	-		IAI47_05260	0.23	-0.3
1,112,222	+		IAI47_05260	0.33	-0.2
1,112,223	-		IAI47_05260	0.33	+2.4
1,112,223	-		IAI47_05260	0.33	-1.6
1,112,223	-		IAI47_05260	0.33	+0.2
1,112,228	+		IAI47_05260	0.34	+0.1
1,112,228	+		IAI47_05260	0.34	-0.1
1,112,229	-		IAI47_05260	0.34	-0.5
1,112,229	-		IAI47_05260	0.34	-0.3
1,112,229	-		IAI47_05260	0.34	-0.3
1,112,229	-		IAI47_05260	0.34	+0.0
1,112,229	-		IAI47_05260	0.34	+0.0
1,112,249	+		IAI47_05260	0.37	+0.4
1,112,249	+		IAI47_05260	0.37	-1.3
1,112,249	+		IAI47_05260	0.37	-0.4
1,112,250	-		IAI47_05260	0.37	-0.1
1,112,250	-		IAI47_05260	0.37	+0.7
1,112,250	-		IAI47_05260	0.37	-0.3
1,112,250	-		IAI47_05260	0.37	+0.1
1,112,252	+		IAI47_05260	0.37	-1.6
1,112,252	+		IAI47_05260	0.37	+0.6
1,112,252	+		IAI47_05260	0.37	-1.1
1,112,252	+		IAI47_05260	0.37	-0.7
1,112,252	+		IAI47_05260	0.37	+0.2
1,112,253	-		IAI47_05260	0.38	-1.3
1,112,253	-		IAI47_05260	0.38	+0.2
1,112,253	-		IAI47_05260	0.38	-0.6
1,112,253	-		IAI47_05260	0.38	+0.5
1,112,253	-		IAI47_05260	0.38	-0.3
1,112,420	+		IAI47_05260	0.61	+1.1
1,112,420	+		IAI47_05260	0.61	+0.2
1,112,420	+		IAI47_05260	0.61	+0.7
1,112,420	+		IAI47_05260	0.61	+0.6
1,112,421	-		IAI47_05260	0.62	+1.1
1,112,421	-		IAI47_05260	0.62	-1.2
1,112,421	-		IAI47_05260	0.62	+0.6
1,112,421	-		IAI47_05260	0.62	+0.9
1,112,421	-		IAI47_05260	0.62	-0.2
1,112,424	-		IAI47_05260	0.62	+0.6
1,112,424	-		IAI47_05260	0.62	+0.7
1,112,424	-		IAI47_05260	0.62	-0.3
1,112,424	-		IAI47_05260	0.62	-1.1
1,112,424	-		IAI47_05260	0.62	+0.2
1,112,459	+		IAI47_05260	0.67	+0.1
1,112,459	+		IAI47_05260	0.67	+0.2
1,112,459	+		IAI47_05260	0.67	-0.6
1,112,460	-		IAI47_05260	0.67	+0.6
1,112,468	+		IAI47_05260	0.68	-0.5
1,112,468	+		IAI47_05260	0.68	+1.6
1,112,468	+		IAI47_05260	0.68	-0.2
1,112,468	+		IAI47_05260	0.68	+0.2
1,112,469	-		IAI47_05260	0.69	+0.7
1,112,469	-		IAI47_05260	0.69	-0.2
1,112,471	+		IAI47_05260	0.69	-0.8
1,112,471	+		IAI47_05260	0.69	-0.6
1,112,471	+		IAI47_05260	0.69	+0.2
1,112,471	+		IAI47_05260	0.69	-2.1
1,112,471	+		IAI47_05260	0.69	+1.8
1,112,472	-		IAI47_05260	0.69	-1.1
1,112,472	-		IAI47_05260	0.69	-0.8
1,112,472	-		IAI47_05260	0.69	-0.8
1,112,472	-		IAI47_05260	0.69	+1.0
1,112,498	+		IAI47_05260	0.73	-0.8
1,112,598	-		IAI47_05260	0.87	+0.2
1,112,600	+		IAI47_05260	0.87	+0.2
1,112,600	+		IAI47_05260	0.87	-0.0
1,112,600	+		IAI47_05260	0.87	+1.6
1,112,601	-		IAI47_05260	0.88	+0.2
1,112,601	-		IAI47_05260	0.88	+0.9
1,112,606	+		IAI47_05260	0.88	-0.1
1,112,606	+		IAI47_05260	0.88	-0.3
1,112,606	+		IAI47_05260	0.88	-0.8
1,112,607	-		IAI47_05260	0.88	-0.5
1,112,611	+		IAI47_05260	0.89	-0.8
1,112,611	+		IAI47_05260	0.89	+0.5
1,112,612	-		IAI47_05260	0.89	-0.0
1,112,612	-		IAI47_05260	0.89	-0.1
1,112,612	-		IAI47_05260	0.89	-0.5
1,112,617	+		IAI47_05260	0.90	+0.7
1,112,617	+		IAI47_05260	0.90	-0.5
1,112,675	+				+0.3
1,112,675	+				-2.3
1,112,682	+				-0.8
1,113,593	+				+2.1
1,113,598	+				-0.3
1,113,599	-				-2.6
1,113,617	-				+0.4
1,113,617	-				+0.2
1,113,624	-				+0.2
1,113,639	-				-0.6
1,113,660	+				-1.0
1,113,661	-				-1.1