Strain Fitness in Pantoea sp. MT58 around IAI47_05185

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,096,184	-		IAI47_05180	0.26	-2.8
1,096,219	+		IAI47_05180	0.30	-3.3
1,096,219	+		IAI47_05180	0.30	-3.5
1,096,220	-		IAI47_05180	0.30	-3.5
1,096,220	-		IAI47_05180	0.30	-3.8
1,096,226	+		IAI47_05180	0.30	-2.9
1,096,226	+		IAI47_05180	0.30	-3.6
1,096,226	+		IAI47_05180	0.30	-3.3
1,096,226	+		IAI47_05180	0.30	-2.1
1,096,227	-		IAI47_05180	0.30	-2.8
1,096,227	-		IAI47_05180	0.30	-4.3
1,096,227	-		IAI47_05180	0.30	-3.5
1,096,266	+		IAI47_05180	0.34	-3.2
1,096,266	+		IAI47_05180	0.34	-2.9
1,096,266	+		IAI47_05180	0.34	-2.9
1,096,266	+		IAI47_05180	0.34	-1.8
1,096,267	-		IAI47_05180	0.34	-2.3
1,096,267	-		IAI47_05180	0.34	-2.6
1,096,372	-		IAI47_05180	0.44	-1.3
1,096,372	-		IAI47_05180	0.44	-3.8
1,096,413	-		IAI47_05180	0.48	-3.1
1,096,413	-		IAI47_05180	0.48	-5.6
1,096,492	-		IAI47_05180	0.56	-3.3
1,096,492	-		IAI47_05180	0.56	-1.8
1,096,492	-		IAI47_05180	0.56	-2.3
1,096,506	+		IAI47_05180	0.57	-4.4
1,096,506	+		IAI47_05180	0.57	+0.2
1,096,506	+		IAI47_05180	0.57	-1.3
1,096,506	+		IAI47_05180	0.57	+0.2
1,096,506	+		IAI47_05180	0.57	-2.6
1,096,506	+		IAI47_05180	0.57	-3.1
1,096,506	+		IAI47_05180	0.57	-1.3
1,096,506	+		IAI47_05180	0.57	-2.3
1,096,506	+		IAI47_05180	0.57	-2.6
1,096,506	+		IAI47_05180	0.57	-2.6
1,096,506	+		IAI47_05180	0.57	-1.8
1,096,506	+		IAI47_05180	0.57	-3.6
1,096,506	+		IAI47_05180	0.57	-2.9
1,096,507	-		IAI47_05180	0.57	-3.8
1,096,507	-		IAI47_05180	0.57	-1.3
1,096,507	-		IAI47_05180	0.57	-2.3
1,096,507	-		IAI47_05180	0.57	-1.3
1,096,507	-		IAI47_05180	0.57	-3.6
1,096,507	-		IAI47_05180	0.57	-4.2
1,096,507	-		IAI47_05180	0.57	-2.6
1,096,507	-		IAI47_05180	0.57	+0.2
1,096,507	-		IAI47_05180	0.57	-2.6
1,096,507	-		IAI47_05180	0.57	-2.6
1,096,507	-		IAI47_05180	0.57	-0.8
1,096,538	+		IAI47_05180	0.60	-2.3
1,096,626	+		IAI47_05180	0.69	-2.3
1,096,626	+		IAI47_05180	0.69	-4.2
1,096,627	-		IAI47_05180	0.69	-2.8
1,096,627	-		IAI47_05180	0.69	-2.1
1,096,629	+		IAI47_05180	0.69	-3.8
1,096,629	+		IAI47_05180	0.69	-2.9
1,096,630	-		IAI47_05180	0.69	-4.0
1,096,630	-		IAI47_05180	0.69	-3.1
1,096,630	-		IAI47_05180	0.69	-3.2
1,096,630	-		IAI47_05180	0.69	-2.3
1,096,661	+		IAI47_05180	0.72	-1.3
1,096,661	+		IAI47_05180	0.72	-2.1
1,096,662	-		IAI47_05180	0.72	-3.2
1,096,662	-		IAI47_05180	0.72	-2.3
1,096,662	-		IAI47_05180	0.72	-1.8
1,096,788	+		IAI47_05180	0.84	-2.1
1,096,865	+				-2.6
1,096,865	+				-1.3
1,096,865	+				-4.2
1,096,874	-				-2.8
1,096,874	-				-2.8
1,096,874	-				-2.3
1,096,874	-				-2.1
1,096,874	-				-3.5
1,096,876	+				-2.6
1,096,877	-				-2.1
1,096,877	-				-4.1
1,096,906	+				-2.8
1,096,906	+				-2.6
1,096,907	-				-2.8
1,096,907	-				-3.6
1,096,907	-				-3.6
1,096,927	-				-3.8
1,097,006	+				+0.2
1,097,007	-				-2.8
1,097,007	-				-1.8
1,097,062	-				+1.8
1,097,069	+				-0.4
1,097,069	+				+1.0
1,097,069	+				-0.0
1,097,069	+				-0.8
1,097,069	+				+1.2
1,097,070	-				+0.6
1,097,070	-				-1.2
1,097,070	-				-0.3
1,097,070	-				-2.1
1,097,070	-				+1.0
1,097,070	-				-0.3
1,097,081	+				+0.5
1,097,081	+				+1.8
1,097,132	+				-0.3
1,097,135	-				+1.1
1,097,135	-				+0.2
1,097,219	+				+2.0
1,097,219	+				-0.2
1,097,219	+				-0.3
1,097,219	+				-1.1
1,097,220	-				+0.7
1,097,220	-				+0.7
1,097,220	-				+0.9
1,097,220	-				+0.4
1,097,220	-				-0.4
1,097,246	+		IAI47_05185	0.10	+1.0
1,097,247	-		IAI47_05185	0.11	-0.3
1,097,301	+		IAI47_05185	0.19	-0.2
1,097,301	+		IAI47_05185	0.19	-0.3
1,097,301	+		IAI47_05185	0.19	-3.1
1,097,301	+		IAI47_05185	0.19	+0.6
1,097,302	-		IAI47_05185	0.19	+1.0
1,097,302	-		IAI47_05185	0.19	+0.8
1,097,302	-		IAI47_05185	0.19	+1.1
1,097,362	+		IAI47_05185	0.29	-0.8
1,097,484	+		IAI47_05185	0.48	+1.2
1,097,485	-		IAI47_05185	0.48	+0.2
1,097,485	-		IAI47_05185	0.48	+0.9
1,097,517	+		IAI47_05185	0.54	-1.5
1,097,517	+		IAI47_05185	0.54	-0.1
1,097,517	+		IAI47_05185	0.54	+1.2
1,097,517	+		IAI47_05185	0.54	-0.8
1,097,518	-		IAI47_05185	0.54	+1.2
1,097,537	+		IAI47_05185	0.57	+0.9
1,097,537	+		IAI47_05185	0.57	+1.2
1,097,537	+		IAI47_05185	0.57	+2.8
1,097,538	-		IAI47_05185	0.57	-0.8
1,097,538	-		IAI47_05185	0.57	-0.3
1,097,716	-		IAI47_05185	0.85	-1.3
1,097,716	-		IAI47_05185	0.85	+0.6
1,097,754	+				+0.6
1,097,754	+				+0.2
1,097,754	+				-2.1
1,097,755	-				+1.6
1,097,755	-				-0.1
1,097,755	-				+0.7
1,097,755	-				-0.0
1,097,755	-				-0.9
1,097,805	+				+0.2
1,097,806	-				+1.4
1,097,806	-				+0.3
1,097,939	+				-1.6
1,097,939	+				-0.1
1,097,940	-				-0.2
1,097,940	-				-0.8
1,097,940	-				+1.2
1,097,940	-				-0.2
1,097,940	-				+1.0
1,098,114	-		IAI47_05190	0.13	+0.4
1,098,114	-		IAI47_05190	0.13	-0.2
1,098,114	-		IAI47_05190	0.13	-0.3
1,098,121	+		IAI47_05190	0.14	-0.6
1,098,121	+		IAI47_05190	0.14	-0.6
1,098,121	+		IAI47_05190	0.14	+0.2
1,098,121	+		IAI47_05190	0.14	-0.0
1,098,122	-		IAI47_05190	0.14	+0.2
1,098,127	+		IAI47_05190	0.14	+0.2
1,098,128	-		IAI47_05190	0.14	+0.0
1,098,147	-		IAI47_05190	0.16	+0.1
1,098,147	-		IAI47_05190	0.16	+1.2
1,098,169	+		IAI47_05190	0.17	-0.3
1,098,186	+		IAI47_05190	0.19	-0.3
1,098,186	+		IAI47_05190	0.19	+0.5
1,098,187	-		IAI47_05190	0.19	-1.1
1,098,187	-		IAI47_05190	0.19	-0.2
1,098,187	-		IAI47_05190	0.19	-0.2
1,098,187	-		IAI47_05190	0.19	+0.0
1,098,204	-		IAI47_05190	0.20	+0.2
1,098,226	+		IAI47_05190	0.22	-0.8
1,098,226	+		IAI47_05190	0.22	-1.0
1,098,226	+		IAI47_05190	0.22	+1.6
1,098,227	-		IAI47_05190	0.22	+0.4
1,098,370	+		IAI47_05190	0.33	+1.8
1,098,413	-		IAI47_05190	0.36	-0.1
1,098,448	-		IAI47_05190	0.39	-1.0
1,098,538	+		IAI47_05190	0.46	+0.4
1,098,538	+		IAI47_05190	0.46	+0.2
1,098,599	+		IAI47_05190	0.51	-0.2
1,098,599	+		IAI47_05190	0.51	+0.5
1,098,600	-		IAI47_05190	0.51	+0.8
1,098,600	-		IAI47_05190	0.51	-1.2
1,098,684	+		IAI47_05190	0.58	+0.2
1,098,806	+		IAI47_05190	0.67	-0.9
1,098,806	+		IAI47_05190	0.67	-0.1
1,098,807	-		IAI47_05190	0.67	+0.8
1,098,807	-		IAI47_05190	0.67	+3.1
1,098,807	-		IAI47_05190	0.67	-0.3
1,098,807	-		IAI47_05190	0.67	-0.5
1,098,807	-		IAI47_05190	0.67	-0.4