Strain Fitness in Pantoea sp. MT58 around IAI47_05110

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,080,328	+		IAI47_05105	0.86	-2.3
1,080,330	+		IAI47_05105	0.86	-2.3
1,080,330	+		IAI47_05105	0.86	+0.2
1,080,495	+				-0.8
1,080,526	+				+0.2
1,082,194	+				-0.8
1,082,195	-				+1.2
1,082,252	+				+0.2
1,082,252	+				+0.2
1,082,253	-				-0.6
1,082,253	-				+1.0
1,082,253	-				+0.5
1,082,253	-				-0.3
1,082,283	+				+0.5
1,082,283	+				+0.4
1,082,283	+				+0.7
1,082,283	+				-0.9
1,082,283	+				-2.6
1,082,283	+				+1.2
1,082,283	+				+0.5
1,082,283	+				+0.2
1,082,284	-				+0.6
1,082,284	-				-1.3
1,082,284	-				-0.4
1,082,284	-				+0.1
1,082,284	-				+0.6
1,082,284	-				-0.2
1,082,284	-				-0.3
1,082,284	-				+1.4
1,082,330	+				+1.6
1,082,344	+				-0.2
1,082,344	+				+0.8
1,082,344	+				-1.3
1,082,345	-				+0.5
1,082,345	-				+0.9
1,082,358	+				+1.3
1,082,358	+				-0.0
1,082,358	+				-0.1
1,082,358	+				+0.5
1,082,359	-				+0.7
1,082,381	+				+1.2
1,082,396	+				+0.2
1,082,403	+				+0.6
1,082,421	+				+1.2
1,082,421	+				+0.9
1,082,421	+				-0.2
1,082,422	-				+0.5
1,082,422	-				-0.0
1,082,422	-				-0.5
1,082,427	-				+0.2
1,082,459	+				-0.8
1,082,459	+				+0.8
1,082,459	+				-0.4
1,082,459	+				-0.3
1,082,459	+				-0.3
1,082,460	-				+0.2
1,082,460	-				+0.5
1,082,460	-				-0.2
1,082,460	-				+0.0
1,082,460	-				-0.1
1,082,460	-				-0.6
1,082,523	+				-0.1
1,082,523	+				+0.1
1,082,523	+				+1.2
1,082,523	+				+0.5
1,082,523	+				+0.8
1,082,523	+				+0.8
1,082,524	-				+0.5
1,082,524	-				-0.1
1,082,524	-				+0.6
1,082,643	+		IAI47_05115	0.21	-0.7
1,082,643	+		IAI47_05115	0.21	-0.9
1,082,643	+		IAI47_05115	0.21	+0.1
1,082,643	+		IAI47_05115	0.21	-0.2
1,082,643	+		IAI47_05115	0.21	+0.0
1,082,643	+		IAI47_05115	0.21	-0.2
1,082,643	+		IAI47_05115	0.21	+0.2
1,082,644	-		IAI47_05115	0.21	-0.6
1,082,644	-		IAI47_05115	0.21	-0.0
1,082,644	-		IAI47_05115	0.21	+1.6
1,082,644	-		IAI47_05115	0.21	-0.2
1,082,645	+		IAI47_05115	0.21	-0.1
1,082,645	+		IAI47_05115	0.21	+0.5
1,082,645	+		IAI47_05115	0.21	-0.6
1,082,645	+		IAI47_05115	0.21	+0.1
1,082,645	+		IAI47_05115	0.21	+0.2
1,082,645	+		IAI47_05115	0.21	-1.2
1,082,645	+		IAI47_05115	0.21	-0.9
1,082,645	+		IAI47_05115	0.21	+0.0
1,082,645	+		IAI47_05115	0.21	-0.5
1,082,645	+		IAI47_05115	0.21	+1.0
1,082,645	+		IAI47_05115	0.21	+0.2
1,082,645	+		IAI47_05115	0.21	-2.3
1,082,645	+		IAI47_05115	0.21	-0.2
1,082,645	+		IAI47_05115	0.21	-1.3
1,082,646	-		IAI47_05115	0.21	-0.6
1,082,646	-		IAI47_05115	0.21	+0.2
1,082,646	-		IAI47_05115	0.21	-0.3
1,082,646	-		IAI47_05115	0.21	+0.4
1,082,646	-		IAI47_05115	0.21	-0.3
1,082,646	-		IAI47_05115	0.21	+1.3
1,082,646	-		IAI47_05115	0.21	+0.2
1,082,646	-		IAI47_05115	0.21	+0.8
1,082,647	+		IAI47_05115	0.22	+0.2
1,082,647	+		IAI47_05115	0.22	+0.2
1,082,647	+		IAI47_05115	0.22	-0.8
1,082,647	+		IAI47_05115	0.22	+0.2
1,082,647	+		IAI47_05115	0.22	+2.2
1,082,648	-		IAI47_05115	0.22	-0.8
1,082,648	-		IAI47_05115	0.22	-0.6
1,082,648	-		IAI47_05115	0.22	-0.0
1,082,669	+		IAI47_05115	0.24	+0.7
1,082,670	-		IAI47_05115	0.25	+0.6
1,082,670	-		IAI47_05115	0.25	-0.5
1,082,684	+		IAI47_05115	0.26	+0.2
1,082,684	+		IAI47_05115	0.26	-2.9
1,082,684	+		IAI47_05115	0.26	-0.9
1,082,684	+		IAI47_05115	0.26	+0.1
1,082,684	+		IAI47_05115	0.26	-1.6
1,082,684	+		IAI47_05115	0.26	+1.2
1,082,685	-		IAI47_05115	0.26	-0.5
1,082,685	-		IAI47_05115	0.26	+0.7
1,082,685	-		IAI47_05115	0.26	-0.6
1,082,685	-		IAI47_05115	0.26	+1.2
1,082,685	-		IAI47_05115	0.26	-1.2
1,082,685	-		IAI47_05115	0.26	+1.8
1,082,760	-		IAI47_05115	0.36	-0.4
1,082,771	-		IAI47_05115	0.38	-0.8
1,082,771	-		IAI47_05115	0.38	+0.4
1,082,771	-		IAI47_05115	0.38	+0.8
1,082,771	-		IAI47_05115	0.38	-0.7
1,082,771	-		IAI47_05115	0.38	+0.4
1,082,771	-		IAI47_05115	0.38	+0.0
1,082,771	-		IAI47_05115	0.38	-1.8
1,082,771	-		IAI47_05115	0.38	+0.5
1,082,771	-		IAI47_05115	0.38	-0.8
1,082,823	-		IAI47_05115	0.44	+0.5
1,082,823	-		IAI47_05115	0.44	-0.4
1,082,829	-		IAI47_05115	0.45	+0.2
1,082,908	+		IAI47_05115	0.55	+0.5
1,082,909	-		IAI47_05115	0.55	-0.8
1,082,909	-		IAI47_05115	0.55	+0.2
1,082,915	+		IAI47_05115	0.56	-0.6
1,082,916	-		IAI47_05115	0.56	-0.7
1,082,933	+		IAI47_05115	0.59	+0.7
1,082,933	+		IAI47_05115	0.59	+0.8
1,082,933	+		IAI47_05115	0.59	-1.3
1,082,933	+		IAI47_05115	0.59	-1.1
1,082,933	+		IAI47_05115	0.59	+0.4
1,082,933	+		IAI47_05115	0.59	+1.4
1,082,934	-		IAI47_05115	0.59	+1.2
1,082,934	-		IAI47_05115	0.59	+1.4
1,082,934	-		IAI47_05115	0.59	+0.5
1,082,934	-		IAI47_05115	0.59	-0.4
1,082,934	-		IAI47_05115	0.59	+0.5
1,082,934	-		IAI47_05115	0.59	+0.1
1,082,934	-		IAI47_05115	0.59	-1.5
1,082,962	+		IAI47_05115	0.62	-0.6
1,082,962	+		IAI47_05115	0.62	+0.5
1,082,962	+		IAI47_05115	0.62	+0.2
1,082,962	+		IAI47_05115	0.62	-0.3
1,082,962	+		IAI47_05115	0.62	-1.2
1,082,962	+		IAI47_05115	0.62	+0.9
1,082,963	-		IAI47_05115	0.62	-0.4
1,082,963	-		IAI47_05115	0.62	+0.2
1,082,963	-		IAI47_05115	0.62	+0.7
1,082,963	-		IAI47_05115	0.62	+3.0
1,083,163	+		IAI47_05115	0.88	+0.2
1,083,163	+		IAI47_05115	0.88	+0.5
1,083,163	+		IAI47_05115	0.88	+1.1
1,083,163	+		IAI47_05115	0.88	-0.4
1,083,163	+		IAI47_05115	0.88	+0.1
1,083,163	+		IAI47_05115	0.88	+0.4
1,083,164	-		IAI47_05115	0.88	-0.4
1,083,164	-		IAI47_05115	0.88	+0.7
1,083,164	-		IAI47_05115	0.88	-0.1
1,083,164	-		IAI47_05115	0.88	-0.8
1,083,164	-		IAI47_05115	0.88	-1.3
1,083,164	-		IAI47_05115	0.88	-0.1
1,083,164	-		IAI47_05115	0.88	-0.4
1,083,166	+		IAI47_05115	0.89	-1.8
1,083,166	+		IAI47_05115	0.89	-0.2
1,083,167	-		IAI47_05115	0.89	-0.9
1,083,167	-		IAI47_05115	0.89	-0.5
1,083,167	-		IAI47_05115	0.89	-0.8
1,083,167	-		IAI47_05115	0.89	-1.1
1,083,167	-		IAI47_05115	0.89	+0.2
1,083,167	-		IAI47_05115	0.89	-0.8