Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04475 and IAI47_04480 are separated by 139 nucleotides IAI47_04480 and IAI47_04485 are separated by 82 nucleotides IAI47_04485 and IAI47_04490 are separated by 159 nucleotides
IAI47_04475: IAI47_04475 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 940,444 to 943,119
_04475
IAI47_04480: IAI47_04480 - DTW domain-containing protein, at 943,259 to 943,936
_04480
IAI47_04485: IAI47_04485 - thioredoxin TrxC, at 944,019 to 944,438
_04485
IAI47_04490: IAI47_04490 - tRNA/rRNA methyltransferase, at 944,598 to 945,782
_04490
Position (kb) 944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.029 kb on + strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.034 kb on + strand at 943.034 kb on + strand at 943.083 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.090 kb on + strand at 943.091 kb on - strand at 943.154 kb on - strand at 943.261 kb on - strand at 943.296 kb on + strand at 943.297 kb on - strand at 943.328 kb on + strand, within IAI47_04480 at 943.328 kb on + strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.329 kb on - strand, within IAI47_04480 at 943.390 kb on + strand, within IAI47_04480 at 943.390 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand, within IAI47_04480 at 943.426 kb on + strand at 943.426 kb on + strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.427 kb on - strand, within IAI47_04480 at 943.428 kb on + strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.429 kb on - strand, within IAI47_04480 at 943.534 kb on + strand, within IAI47_04480 at 943.534 kb on + strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.535 kb on - strand, within IAI47_04480 at 943.596 kb on + strand, within IAI47_04480 at 943.626 kb on + strand, within IAI47_04480 at 943.627 kb on - strand, within IAI47_04480 at 943.708 kb on + strand, within IAI47_04480 at 943.708 kb on + strand, within IAI47_04480 at 943.927 kb on + strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.928 kb on - strand at 943.967 kb on + strand at 943.968 kb on - strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.014 kb on + strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.015 kb on - strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.017 kb on + strand at 944.018 kb on - strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.045 kb on + strand at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.072 kb on + strand, within IAI47_04485 at 944.073 kb on - strand, within IAI47_04485 at 944.100 kb on - strand, within IAI47_04485 at 944.114 kb on + strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.115 kb on - strand, within IAI47_04485 at 944.121 kb on - strand, within IAI47_04485 at 944.169 kb on + strand, within IAI47_04485 at 944.170 kb on - strand, within IAI47_04485 at 944.170 kb on - strand, within IAI47_04485 at 944.175 kb on - strand, within IAI47_04485 at 944.175 kb on - strand, within IAI47_04485 at 944.177 kb on + strand, within IAI47_04485 at 944.177 kb on + strand, within IAI47_04485 at 944.216 kb on + strand, within IAI47_04485 at 944.217 kb on - strand, within IAI47_04485 at 944.217 kb on - strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.296 kb on + strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.297 kb on - strand, within IAI47_04485 at 944.309 kb on + strand, within IAI47_04485 at 944.427 kb on + strand at 944.428 kb on - strand at 944.432 kb on + strand at 944.432 kb on + strand at 944.433 kb on - strand at 944.438 kb on + strand at 944.439 kb on - strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.455 kb on + strand at 944.456 kb on - strand at 944.472 kb on + strand at 944.473 kb on - strand at 944.473 kb on - strand at 944.473 kb on - strand at 944.486 kb on + strand at 944.486 kb on + strand at 944.486 kb on + strand at 944.487 kb on - strand at 944.525 kb on + strand at 944.525 kb on + strand at 944.526 kb on - strand at 944.526 kb on - strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.527 kb on + strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.528 kb on - strand at 944.536 kb on + strand at 944.536 kb on + strand at 944.536 kb on + strand at 944.537 kb on - strand at 944.537 kb on - strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.543 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.547 kb on + strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.548 kb on - strand at 944.566 kb on + strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.567 kb on - strand at 944.597 kb on + strand at 944.598 kb on - strand at 944.598 kb on - strand at 944.612 kb on + strand at 944.613 kb on - strand at 944.613 kb on - strand at 944.613 kb on - strand at 944.633 kb on + strand at 944.633 kb on + strand at 944.633 kb on + strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.634 kb on - strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.643 kb on + strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.644 kb on - strand at 944.663 kb on + strand at 944.663 kb on + strand at 944.663 kb on + strand at 944.664 kb on - strand at 944.690 kb on + strand at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.729 kb on + strand, within IAI47_04490 at 944.730 kb on - strand, within IAI47_04490 at 944.730 kb on - strand, within IAI47_04490 at 944.947 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.993 kb on + strand, within IAI47_04490 at 944.994 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.079 kb on - strand, within IAI47_04490 at 945.207 kb on + strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.208 kb on - strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.217 kb on + strand, within IAI47_04490 at 945.218 kb on - strand, within IAI47_04490 at 945.290 kb on + strand, within IAI47_04490 at 945.290 kb on + strand, within IAI47_04490 at 945.291 kb on - strand, within IAI47_04490 at 945.291 kb on - strand, within IAI47_04490 at 945.344 kb on - strand, within IAI47_04490 at 945.365 kb on + strand, within IAI47_04490 at 945.374 kb on + strand, within IAI47_04490 at 945.374 kb on + strand, within IAI47_04490 at 945.390 kb on - strand, within IAI47_04490 at 945.390 kb on - strand, within IAI47_04490 at 945.416 kb on - strand, within IAI47_04490 at 945.430 kb on + strand, within IAI47_04490 at 945.430 kb on + strand, within IAI47_04490 at 945.431 kb on - strand, within IAI47_04490 at 945.431 kb on - strand, within IAI47_04490
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 943,029 + -0.4 943,029 + -0.0 943,029 + -0.4 943,029 + -0.7 943,029 + +0.3 943,029 + -0.1 943,029 + +0.7 943,030 - -0.3 943,030 - -1.0 943,030 - -0.0 943,034 + -0.1 943,034 + +0.6 943,083 + -0.6 943,090 + -0.1 943,090 + -0.2 943,090 + +0.3 943,090 + +1.1 943,091 - +0.6 943,154 - +1.8 943,261 - -0.2 943,296 + +1.5 943,297 - +0.3 943,328 + IAI47_04480 0.10 -2.6 943,328 + IAI47_04480 0.10 -0.3 943,329 - IAI47_04480 0.10 +1.0 943,329 - IAI47_04480 0.10 -0.2 943,329 - IAI47_04480 0.10 -1.5 943,329 - IAI47_04480 0.10 +0.3 943,329 - IAI47_04480 0.10 +0.1 943,329 - IAI47_04480 0.10 +1.1 943,390 + IAI47_04480 0.19 -2.6 943,390 + IAI47_04480 0.19 +2.6 943,426 + IAI47_04480 0.25 -0.4 943,426 + IAI47_04480 0.25 -0.5 943,426 + IAI47_04480 0.25 +0.3 943,426 + IAI47_04480 0.25 +0.7 943,426 + IAI47_04480 0.25 +1.6 943,426 + +0.4 943,426 + IAI47_04480 0.25 +0.1 943,427 - IAI47_04480 0.25 +0.2 943,427 - IAI47_04480 0.25 -0.1 943,427 - IAI47_04480 0.25 -1.2 943,427 - IAI47_04480 0.25 -0.9 943,427 - IAI47_04480 0.25 +0.3 943,427 - IAI47_04480 0.25 +0.5 943,427 - IAI47_04480 0.25 +0.5 943,427 - IAI47_04480 0.25 -0.3 943,427 - IAI47_04480 0.25 +0.3 943,427 - IAI47_04480 0.25 +0.6 943,427 - IAI47_04480 0.25 +1.3 943,427 - IAI47_04480 0.25 -0.7 943,427 - IAI47_04480 0.25 -1.1 943,428 + IAI47_04480 0.25 +1.3 943,429 - IAI47_04480 0.25 +1.3 943,429 - IAI47_04480 0.25 -0.1 943,429 - IAI47_04480 0.25 +0.9 943,534 + IAI47_04480 0.41 +0.1 943,534 + IAI47_04480 0.41 -0.3 943,535 - IAI47_04480 0.41 -0.9 943,535 - IAI47_04480 0.41 +0.3 943,535 - IAI47_04480 0.41 -1.3 943,596 + IAI47_04480 0.50 +0.3 943,626 + IAI47_04480 0.54 -0.5 943,627 - IAI47_04480 0.54 -1.2 943,708 + IAI47_04480 0.66 +2.1 943,708 + IAI47_04480 0.66 -0.3 943,927 + -0.7 943,928 - +0.1 943,928 - -1.6 943,928 - -0.5 943,928 - +0.2 943,928 - +0.5 943,967 + +0.1 943,968 - +0.6 944,014 + +1.3 944,014 + +1.1 944,014 + -0.4 944,014 + +0.7 944,014 + -0.7 944,014 + -2.1 944,015 - -0.5 944,015 - -0.8 944,015 - +0.1 944,015 - +0.1 944,015 - +0.3 944,017 + -2.8 944,017 + +1.6 944,017 + +0.3 944,017 + +0.3 944,017 + +2.7 944,018 - -0.0 944,020 + +0.4 944,020 + -0.3 944,020 + -0.1 944,021 - +0.4 944,021 - +1.6 944,021 - +1.7 944,021 - -0.2 944,045 + +0.5 944,072 + IAI47_04485 0.13 +1.2 944,072 + IAI47_04485 0.13 +0.3 944,072 + IAI47_04485 0.13 -0.2 944,072 + IAI47_04485 0.13 +0.8 944,072 + IAI47_04485 0.13 +1.0 944,072 + IAI47_04485 0.13 -0.6 944,072 + IAI47_04485 0.13 +1.0 944,073 - IAI47_04485 0.13 +1.3 944,100 - IAI47_04485 0.19 +1.8 944,114 + IAI47_04485 0.23 +1.8 944,115 - IAI47_04485 0.23 +2.1 944,115 - IAI47_04485 0.23 +0.8 944,115 - IAI47_04485 0.23 +2.1 944,115 - IAI47_04485 0.23 +0.7 944,115 - IAI47_04485 0.23 +0.3 944,121 - IAI47_04485 0.24 +1.4 944,169 + IAI47_04485 0.36 +1.2 944,170 - IAI47_04485 0.36 -0.0 944,170 - IAI47_04485 0.36 +1.3 944,175 - IAI47_04485 0.37 +0.3 944,175 - IAI47_04485 0.37 -0.2 944,177 + IAI47_04485 0.38 +1.2 944,177 + IAI47_04485 0.38 +2.0 944,216 + IAI47_04485 0.47 +1.0 944,217 - IAI47_04485 0.47 +2.4 944,217 - IAI47_04485 0.47 +0.3 944,296 + IAI47_04485 0.66 +1.1 944,296 + IAI47_04485 0.66 +0.5 944,296 + IAI47_04485 0.66 +1.4 944,296 + IAI47_04485 0.66 +0.0 944,297 - IAI47_04485 0.66 +0.5 944,297 - IAI47_04485 0.66 +1.8 944,297 - IAI47_04485 0.66 +1.0 944,297 - IAI47_04485 0.66 -0.7 944,297 - IAI47_04485 0.66 +0.4 944,297 - IAI47_04485 0.66 +0.8 944,309 + IAI47_04485 0.69 +4.0 944,427 + +0.6 944,428 - +1.1 944,432 + +2.0 944,432 + +1.1 944,433 - +0.3 944,438 + +1.3 944,439 - -0.2 944,455 + +0.7 944,455 + +0.9 944,455 + +1.6 944,455 + +0.4 944,456 - -0.2 944,472 + +1.1 944,473 - +0.9 944,473 - +0.4 944,473 - +1.4 944,486 + +1.3 944,486 + +1.6 944,486 + +1.8 944,487 - +1.0 944,525 + +2.6 944,525 + +0.7 944,526 - +1.6 944,526 - +0.5 944,527 + +1.3 944,527 + +1.1 944,527 + +2.0 944,527 + +0.8 944,527 + +0.3 944,527 + -0.3 944,527 + +0.0 944,527 + +2.2 944,527 + +1.1 944,527 + +0.4 944,528 - +1.0 944,528 - +0.3 944,528 - +0.8 944,528 - +0.3 944,528 - -0.7 944,528 - +0.0 944,528 - -1.3 944,536 + +1.8 944,536 + +1.1 944,536 + -0.0 944,537 - +0.4 944,537 - +0.1 944,543 + +1.3 944,543 + +1.3 944,543 + +0.3 944,543 + -0.3 944,543 + -0.7 944,547 + +0.3 944,547 + +1.7 944,547 + -1.4 944,547 + -1.9 944,547 + -0.7 944,547 + +0.9 944,547 + +1.8 944,547 + -0.3 944,547 + -1.6 944,548 - +0.8 944,548 - +2.1 944,548 - -0.7 944,548 - -3.1 944,548 - +0.1 944,548 - -0.7 944,566 + +0.3 944,567 - +0.3 944,567 - +0.0 944,567 - +0.6 944,567 - +0.6 944,567 - -1.5 944,567 - +0.0 944,567 - -0.7 944,597 + -0.1 944,598 - -0.2 944,598 - +0.4 944,612 + -2.3 944,613 - -1.3 944,613 - +0.8 944,613 - +1.6 944,633 + +0.3 944,633 + +0.3 944,633 + -0.4 944,634 - -0.7 944,634 - -0.7 944,634 - +0.0 944,634 - +1.0 944,643 + -0.7 944,643 + -1.1 944,643 + -1.2 944,643 + -1.3 944,643 + +0.2 944,643 + +0.6 944,643 + -0.6 944,643 + +0.5 944,643 + -0.7 944,643 + -0.3 944,643 + +0.5 944,643 + +0.8 944,643 + -0.2 944,643 + -0.4 944,643 + -0.0 944,644 - +0.3 944,644 - +0.5 944,644 - +0.3 944,644 - +0.4 944,644 - -1.2 944,644 - +3.7 944,644 - -0.7 944,644 - +0.6 944,663 + -0.5 944,663 + -0.6 944,663 + -1.0 944,664 - +2.6 944,690 + -0.3 944,729 + IAI47_04490 0.11 -0.4 944,729 + IAI47_04490 0.11 -0.6 944,729 + IAI47_04490 0.11 -0.7 944,729 + IAI47_04490 0.11 -0.6 944,730 - IAI47_04490 0.11 +0.3 944,730 - IAI47_04490 0.11 +1.6 944,947 + IAI47_04490 0.29 +1.0 944,993 + IAI47_04490 0.33 -0.3 944,993 + IAI47_04490 0.33 +0.4 944,993 + IAI47_04490 0.33 -0.7 944,993 + IAI47_04490 0.33 +0.7 944,994 - IAI47_04490 0.33 -0.0 945,079 - IAI47_04490 0.41 +1.1 945,079 - IAI47_04490 0.41 -0.2 945,079 - IAI47_04490 0.41 -0.6 945,079 - IAI47_04490 0.41 +0.4 945,207 + IAI47_04490 0.51 -0.6 945,208 - IAI47_04490 0.51 +0.8 945,208 - IAI47_04490 0.51 +0.3 945,208 - IAI47_04490 0.51 -0.4 945,208 - IAI47_04490 0.51 -1.7 945,208 - IAI47_04490 0.51 -0.7 945,208 - IAI47_04490 0.51 -0.9 945,217 + IAI47_04490 0.52 +1.0 945,217 + IAI47_04490 0.52 -0.2 945,217 + IAI47_04490 0.52 -2.7 945,218 - IAI47_04490 0.52 -0.5 945,290 + IAI47_04490 0.58 +0.3 945,290 + IAI47_04490 0.58 +0.8 945,291 - IAI47_04490 0.58 -0.2 945,291 - IAI47_04490 0.58 +0.1 945,344 - IAI47_04490 0.63 -0.1 945,365 + IAI47_04490 0.65 -1.0 945,374 + IAI47_04490 0.65 +0.3 945,374 + IAI47_04490 0.65 +0.3 945,390 - IAI47_04490 0.67 -1.6 945,390 - IAI47_04490 0.67 +0.6 945,416 - IAI47_04490 0.69 -0.5 945,430 + IAI47_04490 0.70 +0.3 945,430 + IAI47_04490 0.70 +2.0 945,431 - IAI47_04490 0.70 +1.3 945,431 - IAI47_04490 0.70 +1.3
Or see this region's nucleotide sequence