Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04465 and IAI47_04470 are separated by 348 nucleotides IAI47_04470 and IAI47_04475 are separated by 99 nucleotides
IAI47_04465: IAI47_04465 - MFS transporter, at 937,351 to 938,640
_04465
IAI47_04470: IAI47_04470 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 938,989 to 940,344
_04470
IAI47_04475: IAI47_04475 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 940,444 to 943,119
_04475
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.007 kb on + strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.008 kb on - strand, within IAI47_04465 at 938.051 kb on + strand, within IAI47_04465 at 938.065 kb on - strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.119 kb on + strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.120 kb on - strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.134 kb on + strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.135 kb on - strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.146 kb on + strand, within IAI47_04465 at 938.147 kb on - strand, within IAI47_04465 at 938.155 kb on - strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.234 kb on + strand, within IAI47_04465 at 938.235 kb on - strand, within IAI47_04465 at 938.253 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.303 kb on + strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.304 kb on - strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.307 kb on + strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.308 kb on - strand, within IAI47_04465 at 938.312 kb on + strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.313 kb on - strand, within IAI47_04465 at 938.354 kb on + strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.355 kb on - strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.366 kb on + strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.367 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.389 kb on - strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.398 kb on + strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.399 kb on - strand, within IAI47_04465 at 938.421 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.473 kb on + strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.474 kb on - strand, within IAI47_04465 at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.512 kb on + strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.513 kb on - strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.563 kb on + strand at 938.564 kb on - strand at 938.631 kb on + strand at 938.632 kb on - strand at 938.632 kb on - strand at 938.638 kb on + strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.639 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.670 kb on - strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.746 kb on + strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.747 kb on - strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.768 kb on + strand at 938.769 kb on - strand at 938.769 kb on - strand at 938.772 kb on + strand at 938.773 kb on - strand at 938.773 kb on - strand at 938.793 kb on - strand at 938.793 kb on - strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.833 kb on + strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.834 kb on - strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.837 kb on + strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.838 kb on - strand at 938.915 kb on + strand at 938.916 kb on - strand at 938.963 kb on - strand at 938.975 kb on + strand at 938.975 kb on + strand at 938.976 kb on - strand at 938.976 kb on - strand at 940.412 kb on - strand at 940.456 kb on - strand at 940.456 kb on - strand at 940.503 kb on + strand at 940.504 kb on - strand at 940.536 kb on + strand at 940.537 kb on - strand at 940.537 kb on - strand at 940.537 kb on - strand at 940.554 kb on + strand at 940.554 kb on + strand at 940.555 kb on - strand at 940.585 kb on - strand at 940.620 kb on - strand at 940.620 kb on - strand at 940.708 kb on - strand at 940.708 kb on - strand at 940.723 kb on - strand, within IAI47_04475 at 940.733 kb on - strand, within IAI47_04475 at 940.796 kb on + strand, within IAI47_04475 at 940.799 kb on + strand, within IAI47_04475 at 940.812 kb on + strand, within IAI47_04475 at 940.812 kb on + strand, within IAI47_04475 at 940.813 kb on - strand, within IAI47_04475 at 940.856 kb on + strand, within IAI47_04475 at 940.862 kb on + strand, within IAI47_04475 at 940.863 kb on - strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.865 kb on + strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.866 kb on - strand, within IAI47_04475 at 940.966 kb on + strand, within IAI47_04475 at 940.966 kb on + strand, within IAI47_04475 at 940.967 kb on - strand, within IAI47_04475 at 940.967 kb on - strand, within IAI47_04475 at 941.064 kb on + strand, within IAI47_04475 at 941.064 kb on + strand, within IAI47_04475 at 941.097 kb on + strand, within IAI47_04475 at 941.097 kb on + strand, within IAI47_04475 at 941.136 kb on + strand, within IAI47_04475 at 941.137 kb on - strand, within IAI47_04475 at 941.137 kb on - strand, within IAI47_04475 at 941.161 kb on + strand, within IAI47_04475 at 941.161 kb on + strand, within IAI47_04475 at 941.162 kb on - strand, within IAI47_04475 at 941.194 kb on - strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.237 kb on + strand, within IAI47_04475 at 941.238 kb on - strand, within IAI47_04475 at 941.238 kb on - strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.253 kb on + strand, within IAI47_04475 at 941.254 kb on - strand, within IAI47_04475 at 941.322 kb on + strand, within IAI47_04475 at 941.322 kb on + strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475 at 941.323 kb on - strand, within IAI47_04475
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 938,007 + IAI47_04465 0.51 +0.3 938,007 + IAI47_04465 0.51 +1.1 938,007 + IAI47_04465 0.51 +0.6 938,008 - IAI47_04465 0.51 -0.7 938,008 - IAI47_04465 0.51 +0.3 938,051 + IAI47_04465 0.54 +0.5 938,065 - IAI47_04465 0.55 +1.3 938,119 + IAI47_04465 0.60 +0.0 938,119 + IAI47_04465 0.60 +0.1 938,120 - IAI47_04465 0.60 -0.7 938,120 - IAI47_04465 0.60 +0.3 938,134 + IAI47_04465 0.61 +0.6 938,134 + IAI47_04465 0.61 +1.3 938,134 + IAI47_04465 0.61 -0.2 938,135 - IAI47_04465 0.61 +0.8 938,135 - IAI47_04465 0.61 -1.1 938,135 - IAI47_04465 0.61 -0.4 938,135 - IAI47_04465 0.61 -0.6 938,135 - IAI47_04465 0.61 -0.4 938,135 - IAI47_04465 0.61 -0.6 938,146 + IAI47_04465 0.62 -0.1 938,146 + IAI47_04465 0.62 +0.0 938,146 + IAI47_04465 0.62 -0.2 938,147 - IAI47_04465 0.62 -0.0 938,155 - IAI47_04465 0.62 +1.1 938,234 + IAI47_04465 0.68 +0.1 938,234 + IAI47_04465 0.68 +2.6 938,235 - IAI47_04465 0.69 +0.3 938,253 + IAI47_04465 0.70 -0.5 938,303 + IAI47_04465 0.74 -1.7 938,303 + IAI47_04465 0.74 +1.8 938,304 - IAI47_04465 0.74 +0.9 938,304 - IAI47_04465 0.74 -0.7 938,307 + IAI47_04465 0.74 +0.8 938,307 + IAI47_04465 0.74 +1.1 938,307 + IAI47_04465 0.74 +0.0 938,307 + IAI47_04465 0.74 -0.2 938,307 + IAI47_04465 0.74 +0.3 938,307 + IAI47_04465 0.74 -0.9 938,307 + IAI47_04465 0.74 +0.7 938,307 + IAI47_04465 0.74 -0.0 938,307 + IAI47_04465 0.74 +1.3 938,307 + IAI47_04465 0.74 -0.6 938,307 + IAI47_04465 0.74 -0.6 938,307 + IAI47_04465 0.74 +1.8 938,307 + IAI47_04465 0.74 -0.2 938,307 + IAI47_04465 0.74 +0.1 938,307 + IAI47_04465 0.74 -0.6 938,307 + IAI47_04465 0.74 +1.7 938,307 + IAI47_04465 0.74 -0.3 938,307 + IAI47_04465 0.74 +0.3 938,307 + IAI47_04465 0.74 +0.8 938,307 + IAI47_04465 0.74 +0.4 938,308 - IAI47_04465 0.74 -1.3 938,308 - IAI47_04465 0.74 +1.0 938,308 - IAI47_04465 0.74 -0.7 938,308 - IAI47_04465 0.74 +0.3 938,308 - IAI47_04465 0.74 -1.1 938,308 - IAI47_04465 0.74 +0.5 938,308 - IAI47_04465 0.74 +0.4 938,308 - IAI47_04465 0.74 -0.3 938,308 - IAI47_04465 0.74 +0.7 938,308 - IAI47_04465 0.74 -0.2 938,308 - IAI47_04465 0.74 -1.5 938,308 - IAI47_04465 0.74 +0.7 938,308 - IAI47_04465 0.74 -1.5 938,308 - IAI47_04465 0.74 -2.3 938,308 - IAI47_04465 0.74 -1.6 938,308 - IAI47_04465 0.74 +0.5 938,308 - IAI47_04465 0.74 -0.7 938,308 - IAI47_04465 0.74 -1.1 938,308 - IAI47_04465 0.74 +0.8 938,308 - IAI47_04465 0.74 -1.0 938,308 - IAI47_04465 0.74 +1.3 938,308 - IAI47_04465 0.74 +1.3 938,308 - IAI47_04465 0.74 +0.3 938,308 - IAI47_04465 0.74 +0.2 938,312 + IAI47_04465 0.74 +0.1 938,313 - IAI47_04465 0.75 +0.4 938,313 - IAI47_04465 0.75 -0.5 938,313 - IAI47_04465 0.75 +1.8 938,354 + IAI47_04465 0.78 +0.3 938,355 - IAI47_04465 0.78 -0.2 938,355 - IAI47_04465 0.78 -0.2 938,366 + IAI47_04465 0.79 +0.1 938,366 + IAI47_04465 0.79 +0.5 938,367 - IAI47_04465 0.79 -0.2 938,367 - IAI47_04465 0.79 +0.4 938,389 - IAI47_04465 0.80 -0.0 938,389 - IAI47_04465 0.80 +0.7 938,398 + IAI47_04465 0.81 -1.9 938,398 + IAI47_04465 0.81 +0.8 938,398 + IAI47_04465 0.81 +0.3 938,399 - IAI47_04465 0.81 +0.0 938,399 - IAI47_04465 0.81 -1.3 938,421 + IAI47_04465 0.83 -0.6 938,473 + IAI47_04465 0.87 -0.6 938,473 + IAI47_04465 0.87 +0.3 938,473 + IAI47_04465 0.87 -0.1 938,473 + IAI47_04465 0.87 -1.1 938,473 + IAI47_04465 0.87 +1.1 938,473 + IAI47_04465 0.87 -0.3 938,473 + IAI47_04465 0.87 -0.6 938,474 - IAI47_04465 0.87 +2.1 938,474 - IAI47_04465 0.87 -0.3 938,474 - IAI47_04465 0.87 -0.2 938,474 - IAI47_04465 0.87 +0.6 938,474 - IAI47_04465 0.87 -0.0 938,512 + +0.3 938,512 + -0.6 938,512 + -1.2 938,512 + -0.3 938,512 + +1.1 938,512 + -0.5 938,513 - -0.7 938,513 - -1.1 938,513 - +0.0 938,513 - -0.1 938,563 + +0.3 938,563 + -1.6 938,563 + -0.9 938,563 + -0.2 938,564 - +1.7 938,631 + -0.5 938,632 - -0.3 938,632 - +0.8 938,638 + -0.2 938,639 - -0.3 938,639 - -0.3 938,639 - +0.1 938,670 - -0.6 938,670 - +0.9 938,670 - +0.3 938,670 - -0.5 938,670 - -0.3 938,746 + +0.3 938,746 + -0.7 938,746 + +0.1 938,746 + -0.7 938,747 - +0.6 938,747 - -0.8 938,747 - +0.4 938,747 - +0.0 938,768 + +0.4 938,768 + +0.1 938,768 + +0.7 938,768 + -0.1 938,769 - +0.6 938,769 - -0.7 938,772 + -0.5 938,773 - +1.3 938,773 - +0.2 938,793 - +0.3 938,793 - +0.9 938,833 + +1.4 938,833 + -0.2 938,833 + +0.5 938,833 + -2.2 938,833 + +0.3 938,833 + +0.3 938,834 - -0.3 938,834 - +1.0 938,834 - -0.7 938,834 - +1.3 938,837 + -0.2 938,837 + -0.3 938,837 + +0.8 938,837 + -0.6 938,837 + +0.8 938,837 + -0.4 938,838 - -1.7 938,838 - -2.2 938,838 - -2.3 938,915 + -0.7 938,916 - +0.4 938,963 - +0.4 938,975 + -1.5 938,975 + -1.7 938,976 - -0.3 938,976 - -0.1 940,412 - -1.0 940,456 - -0.4 940,456 - -0.0 940,503 + +0.0 940,504 - -0.4 940,536 + -0.3 940,537 - -0.9 940,537 - -1.3 940,537 - -1.3 940,554 + -0.1 940,554 + -0.2 940,555 - +0.4 940,585 - +0.3 940,620 - -0.6 940,620 - +0.3 940,708 - -0.4 940,708 - -0.9 940,723 - IAI47_04475 0.10 -0.4 940,733 - IAI47_04475 0.11 -0.2 940,796 + IAI47_04475 0.13 +1.2 940,799 + IAI47_04475 0.13 -0.9 940,812 + IAI47_04475 0.14 +0.3 940,812 + IAI47_04475 0.14 +0.6 940,813 - IAI47_04475 0.14 +1.0 940,856 + IAI47_04475 0.15 -0.5 940,862 + IAI47_04475 0.16 -0.7 940,863 - IAI47_04475 0.16 -1.2 940,865 + IAI47_04475 0.16 -1.1 940,865 + IAI47_04475 0.16 -1.3 940,865 + IAI47_04475 0.16 +0.3 940,865 + IAI47_04475 0.16 +1.1 940,866 - IAI47_04475 0.16 +0.0 940,866 - IAI47_04475 0.16 -1.9 940,866 - IAI47_04475 0.16 +0.8 940,866 - IAI47_04475 0.16 +0.6 940,866 - IAI47_04475 0.16 -0.0 940,866 - IAI47_04475 0.16 -0.0 940,966 + IAI47_04475 0.20 +1.3 940,966 + IAI47_04475 0.20 -0.1 940,967 - IAI47_04475 0.20 -0.6 940,967 - IAI47_04475 0.20 -0.4 941,064 + IAI47_04475 0.23 +1.3 941,064 + IAI47_04475 0.23 -1.3 941,097 + IAI47_04475 0.24 -0.1 941,097 + IAI47_04475 0.24 +0.3 941,136 + IAI47_04475 0.26 -0.9 941,137 - IAI47_04475 0.26 -1.0 941,137 - IAI47_04475 0.26 -0.7 941,161 + IAI47_04475 0.27 -0.3 941,161 + IAI47_04475 0.27 -0.3 941,162 - IAI47_04475 0.27 +0.9 941,194 - IAI47_04475 0.28 +0.9 941,237 + IAI47_04475 0.30 -2.1 941,237 + IAI47_04475 0.30 -0.3 941,237 + IAI47_04475 0.30 +0.9 941,237 + IAI47_04475 0.30 +2.3 941,237 + IAI47_04475 0.30 -0.0 941,238 - IAI47_04475 0.30 +0.0 941,238 - IAI47_04475 0.30 -2.3 941,253 + IAI47_04475 0.30 +0.3 941,253 + IAI47_04475 0.30 -0.2 941,253 + IAI47_04475 0.30 +0.5 941,254 - IAI47_04475 0.30 -0.2 941,322 + IAI47_04475 0.33 +0.8 941,322 + IAI47_04475 0.33 -0.3 941,323 - IAI47_04475 0.33 -0.2 941,323 - IAI47_04475 0.33 +0.1 941,323 - IAI47_04475 0.33 +0.1 941,323 - IAI47_04475 0.33 +1.3 941,323 - IAI47_04475 0.33 +0.8
Or see this region's nucleotide sequence