Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10945

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10940 and AZOBR_RS10945 are separated by 208 nucleotidesAZOBR_RS10945 and AZOBR_RS10950 are separated by 15 nucleotidesAZOBR_RS10950 and AZOBR_RS10955 are separated by 12 nucleotides AZOBR_RS10940: AZOBR_RS10940 - 3-phosphoglycerate dehydrogenase, at 2,305,643 to 2,306,890 _RS10940 AZOBR_RS10945: AZOBR_RS10945 - arsenate reductase, at 2,307,099 to 2,307,440 _RS10945 AZOBR_RS10950: AZOBR_RS10950 - SAM-dependent methyltransferase, at 2,307,456 to 2,308,382 _RS10950 AZOBR_RS10955: AZOBR_RS10955 - GCN5 family acetyltransferase, at 2,308,395 to 2,308,985 _RS10955 Position (kb) 2307 2308Strain fitness (log2 ratio) -1 0 1at 2307.047 kb on + strandat 2307.048 kb on - strandat 2307.118 kb on - strandat 2307.199 kb on - strand, within AZOBR_RS10945at 2307.199 kb on - strand, within AZOBR_RS10945at 2307.438 kb on + strandat 2307.639 kb on + strand, within AZOBR_RS10950at 2307.639 kb on + strand, within AZOBR_RS10950at 2307.639 kb on + strand, within AZOBR_RS10950at 2307.640 kb on - strand, within AZOBR_RS10950at 2307.726 kb on + strand, within AZOBR_RS10950at 2307.726 kb on + strand, within AZOBR_RS10950at 2307.727 kb on - strand, within AZOBR_RS10950at 2307.727 kb on - strand, within AZOBR_RS10950at 2307.727 kb on - strand, within AZOBR_RS10950at 2307.727 kb on - strand, within AZOBR_RS10950at 2307.744 kb on + strand, within AZOBR_RS10950at 2307.744 kb on + strand, within AZOBR_RS10950at 2307.745 kb on - strand, within AZOBR_RS10950at 2307.745 kb on - strand, within AZOBR_RS10950at 2307.765 kb on + strand, within AZOBR_RS10950at 2307.765 kb on + strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.766 kb on - strand, within AZOBR_RS10950at 2307.798 kb on + strand, within AZOBR_RS10950at 2307.798 kb on + strand, within AZOBR_RS10950at 2307.799 kb on - strand, within AZOBR_RS10950at 2308.074 kb on + strand, within AZOBR_RS10950at 2308.074 kb on + strand, within AZOBR_RS10950at 2308.075 kb on - strand, within AZOBR_RS10950at 2308.101 kb on + strand, within AZOBR_RS10950at 2308.102 kb on - strand, within AZOBR_RS10950

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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2,307,047 + -0.9
2,307,048 - -0.4
2,307,118 - +0.3
2,307,199 - AZOBR_RS10945 0.29 -0.9
2,307,199 - AZOBR_RS10945 0.29 -0.7
2,307,438 + -0.2
2,307,639 + AZOBR_RS10950 0.20 -0.0
2,307,639 + AZOBR_RS10950 0.20 +0.5
2,307,639 + AZOBR_RS10950 0.20 -0.7
2,307,640 - AZOBR_RS10950 0.20 +0.1
2,307,726 + AZOBR_RS10950 0.29 -0.1
2,307,726 + AZOBR_RS10950 0.29 +0.3
2,307,727 - AZOBR_RS10950 0.29 +0.2
2,307,727 - AZOBR_RS10950 0.29 -0.7
2,307,727 - AZOBR_RS10950 0.29 -0.8
2,307,727 - AZOBR_RS10950 0.29 +0.5
2,307,744 + AZOBR_RS10950 0.31 +0.8
2,307,744 + AZOBR_RS10950 0.31 -0.3
2,307,745 - AZOBR_RS10950 0.31 +0.2
2,307,745 - AZOBR_RS10950 0.31 +0.6
2,307,765 + AZOBR_RS10950 0.33 +0.1
2,307,765 + AZOBR_RS10950 0.33 +0.2
2,307,766 - AZOBR_RS10950 0.33 +0.4
2,307,766 - AZOBR_RS10950 0.33 +0.5
2,307,766 - AZOBR_RS10950 0.33 -0.0
2,307,766 - AZOBR_RS10950 0.33 -0.4
2,307,766 - AZOBR_RS10950 0.33 -0.5
2,307,766 - AZOBR_RS10950 0.33 -1.5
2,307,766 - AZOBR_RS10950 0.33 -0.7
2,307,798 + AZOBR_RS10950 0.37 -0.1
2,307,798 + AZOBR_RS10950 0.37 -1.5
2,307,799 - AZOBR_RS10950 0.37 -0.5
2,308,074 + AZOBR_RS10950 0.67 -0.1
2,308,074 + AZOBR_RS10950 0.67 +0.4
2,308,075 - AZOBR_RS10950 0.67 +0.4
2,308,101 + AZOBR_RS10950 0.70 -1.0
2,308,102 - AZOBR_RS10950 0.70 -1.2

Or see this region's nucleotide sequence